>Y283_BACHD (Q9KG32) Hypothetical protein BH0283|
          Length = 265

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 48/118 (40%), Positives = 76/118 (64%)
 Frame = -2

Query: 487 DFIVELSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPV 308
           D+++E+ S + + ++ PN   + +   RG+IVT+ + + + YDF +R F P  G++EDPV
Sbjct: 149 DYLIEIDSEQRLKELNPNFSLLEQIDTRGIIVTSKSTS-TEYDFISRCFFPAVGVNEDPV 207

Query: 307 CGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 134
            GSAHC L PYW  KL K + +A+Q S R G L ++L  ++ RV + G+AVTV+   L
Sbjct: 208 TGSAHCCLGPYWQEKLNKNEFLAYQASKRGGMLKIKL--QHDRVFLLGQAVTVLRSEL 263

>Y2770_PSEAE (Q9I073) Hypothetical protein PA2770|
          Length = 259

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 51/119 (42%), Positives = 70/119 (58%)
 Frame = -2

Query: 490 NDFIVELSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDP 311
           +D++V +   K +A + P+   ++    RGV VTA +     +DF +R+F P  G++EDP
Sbjct: 144 DDYLVVVDDEKTIAALAPDFARLKGLPCRGVAVTARSQR---FDFVSRWFGPNVGVNEDP 200

Query: 310 VCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 134
           V GSAH  LAPYW  +LGK +L A Q   R G   LE DV   RV I G+A   M+GTL
Sbjct: 201 VTGSAHTSLAPYWAQRLGKTRLSAEQGGARKGR--LECDVRGERVVISGKAALYMSGTL 257

>Y3578_PSEAE (Q9HY42) Hypothetical protein PA3578|
          Length = 261

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 53/116 (45%), Positives = 64/116 (55%)
 Frame = -2

Query: 481 IVELSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCG 302
           +V L S + V    P+   + +   RGVIVTA    G   DF +RFF P  G+DEDPV G
Sbjct: 148 LVLLESEEAVRACRPDFAALARLPWRGVIVTA---RGLQKDFVSRFFAPAMGVDEDPVTG 204

Query: 301 SAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 134
           SAHC L PYW  +L K  L A Q S R G L+  L  E  RV I G AV V +G +
Sbjct: 205 SAHCSLIPYWAQRLNKLSLTAQQCSARGGELWCRL--EGERVSIAGHAVLVASGRI 258

>PHZ1_MOUSE (Q9CXN7) Probable oxidoreductase 3110049J23Rik|
          Length = 288

 Score = 85.1 bits (209), Expect = 9e-17
 Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
 Frame = -2

Query: 472 LSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSG---YDFFTRFFCPKFGIDEDPVCG 302
           L S K   + LP IE+  K   RG+I+T     G     YDF++R F P  G+ EDPV G
Sbjct: 174 LESLKVNTEPLPAIEKTGKV--RGLILTVKGEPGGQTALYDFYSRCFAPWVGVAEDPVTG 231

Query: 301 SAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 128
           S H +L PYW  +LGK+++ AFQ S R G L + L  +  RV I+G AV V+ GTL A
Sbjct: 232 STHTLLGPYWSEELGKKEMRAFQCSRRGGELDINLRPDG-RVDIKGGAVIVLEGTLTA 288

>PHZ2_MOUSE (Q9DCG6) Probable oxidoreductase 0610038K03Rik|
          Length = 288

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
 Frame = -2

Query: 472 LSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSG---YDFFTRFFCPKFGIDEDPVCG 302
           L S K   + LP IE+  K   RG+I+T     G     YDF++R+F P  GI EDPV G
Sbjct: 174 LESLKVNTEPLPAIEKTGKV--RGLILTVKGEPGGQTPPYDFYSRYFAPWVGIAEDPVTG 231

Query: 301 SAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 128
           SAH VL+ YW  +L K+++ AFQ S R G L + L  +  RV I+G AV V+ GTL A
Sbjct: 232 SAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDG-RVDIKGGAVIVLEGTLTA 288

>ULA4_HUMAN (P30039) MAWD binding protein (Unknown protein 32 from 2D-page of|
           liver tissue)
          Length = 288

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
 Frame = -2

Query: 406 RGVIVTAPAPAGS---GYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAF 236
           +G+I+T     G     +DF++R+F P  G+ EDPV GSAH VL+ YW   LGK+++ AF
Sbjct: 194 KGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSYWSQHLGKKEMHAF 253

Query: 235 QVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 128
           Q S R G L + L  +  RV I+G A  V+ GTL A
Sbjct: 254 QCSHRGGELGISLRPDG-RVDIRGGAAVVLEGTLTA 288

>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221|
          Length = 275

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
 Frame = -2

Query: 412 AGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQ 233
           AG+ V+V A A AG+ Y   +RFF P FGI EDP  GSAHC+L P +G KLG  +L   Q
Sbjct: 178 AGQTVVV-AQADAGADYAVVSRFFAPGFGIPEDPATGSAHCILMPLFGDKLGAGRLKFHQ 236

Query: 232 VSPRSGTLYLELDVENR--RVRIQGEAVTVMAGTL 134
             P  G    +L+ ENR  RV ++G   TVM   L
Sbjct: 237 AYPGRGG---DLECENRGARVLLRGRGFTVMESQL 268

>Y3195_VIBCH (Q9KMG3) Hypothetical protein VCA0395|
          Length = 279

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 38/101 (37%), Positives = 51/101 (50%)
 Frame = -2

Query: 487 DFIVELSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPV 308
           D ++ L S + V +  P+ + +R+      ++   A   SGY    R+F PK GI ED  
Sbjct: 166 DLVLVLPSVEAVMNFQPDDDRLREINEYHALIVTAANGNSGY--VLRYFAPKIGISEDLA 223

Query: 307 CGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVEN 185
            GSA C LAPYW  KLG   L A Q+S   G   +E   EN
Sbjct: 224 TGSAQCSLAPYWFKKLGSDALNARQLSMSGGYFEVERTTEN 264

>Y3446_CLOAB (P58293) Hypothetical protein CAC3446|
          Length = 302

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
 Frame = -2

Query: 448 DVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY-- 275
           DVL  + +I KC   G  V A     S      R F P  GI+EDPV G+A+  L  Y  
Sbjct: 186 DVLSKLSKIIKC--NGYYVFAVTSEDSDILIHGRMFAPAIGINEDPVTGNANGPLGAYLV 243

Query: 274 ------WGGKLGKQKLVAFQVSPRSGTLYLELDVENR---RVRIQGEAVTVMAGTL 134
                 +   + K K    +   R G + +E+ V+      V+I G AV V    L
Sbjct: 244 HHKLACYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVKISGNAVVVFKSEL 299

>AES1_SCHPO (Q8NIL3) Antisense-enhancing sequence 1 (AES factor 1)|
          Length = 296

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
 Frame = -2

Query: 481 IVELSSGKEVADVLPNIEEIRKCAGRGVIVTAPAPAGSGYDFF-TRFFCPKFGIDEDPVC 305
           +++L +  +V +++P  + + +       +        G D F +R F P   ++EDP C
Sbjct: 170 VIQLPNATDVLNLVPKFQSLSQVCKNNDWIGVTVFGELGKDSFESRSFAPLIHVNEDPAC 229

Query: 304 GSAHCVLAPYWGGKLGKQKLVAFQVS-----PRSGTLYLELDVENRR---VRIQGEAVTV 149
           GS    +  Y G        ++F +S      R     + +DV + +   V + G+A T 
Sbjct: 230 GSGAGAVGVYIGSSQKTPTSLSFTISQGTKLSRQAISKVSVDVSSNKSIAVFVGGQAKTC 289

Query: 148 MAGTLF 131
           ++G  F
Sbjct: 290 ISGKSF 295

>Y1330_DEIRA (Q9RUQ2) Hypothetical protein DR1330|
          Length = 308

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
 Frame = -2

Query: 442 LPNIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGK 263
           LP I E+ +  G  V V A AP G    F  R F P  GI EDPV GSA   L       
Sbjct: 195 LPRIAELSRELGV-VSVYAYAPVGVNR-FAARDFAPLVGIPEDPVTGSAGGALL----AL 248

Query: 262 LGKQKLVAFQVSPRSGTLY----------LELDVENRRVRIQGEAV 155
           L  +  +  + +  SG +Y          +E++VE R  R++   V
Sbjct: 249 LASEGRLPLRGNRASGLIYQGHALGTPGEIEVEVEVRGTRVEAVQV 294

>YHI9_YEAST (P38765) Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic|
           region
          Length = 294

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
 Frame = -2

Query: 403 GVIVTAPAP-AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS 227
           G+I+  P   A     +  R F P   + EDPVCGS    LA Y       +K     +S
Sbjct: 194 GIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITIS 253

Query: 226 -----PRSGTLYLELDVE---NRRVRIQGEAVTVMAGTL 134
                 R+G +   +  E   +    I G A TV+ G +
Sbjct: 254 EGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKI 292

>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 582

 Score = 26.2 bits (56), Expect(2) = 0.80
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 339 QKKRVKKS*PDPAGAGAVTITPLPAHFLISSMFGRT 446
           Q+K    + P P  A A T+ P PAH + ++  G T
Sbjct: 404 QQKTPLPAPPPPPAAPAQTLVPAPAHLVATAGGGST 439



 Score = 24.6 bits (52), Expect(2) = 0.80
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 187 SQHPAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSV---HCHIPDPHQ 324
           S  P P ++  +L  P T P  + P  HP+    HSV     H+P   Q
Sbjct: 356 SHRPQPELLKSTLPPPSTTPAPLPPHPHPH---PHSVALPPAHLPVQQQ 401

>SYT_ZYMMO (Q5NPH1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 659

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 396 LLQHRRLLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESW 259
           L  H   L+ A    H    Q + L  ++  A  +VFWHP G   W
Sbjct: 235 LKAHLERLEEAQKRDHRRLGQEMDLFHLQQEAQGSVFWHPNGYTIW 280

>PHZF_PSECL (Q51520) Phenazine biosynthesis protein phzF|
          Length = 278

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
 Frame = -2

Query: 376 AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY----------------WGGKLGKQKL 245
           AG+G  + +R F P +G+ ED   GSA   LA +                 G ++G+  L
Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQQIEILQGVEIGRPSL 247

Query: 244 VAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 134
           +  +   R+  L         RV + G  VT   GT+
Sbjct: 248 MFARAEGRADQL--------TRVEVSGNGVTFGRGTI 276

>PHZF_PSEFL (Q51792) Phenazine biosynthesis protein phzF|
          Length = 278

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
 Frame = -2

Query: 376 AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY----------------WGGKLGKQKL 245
           AG+G  + +R F P +G+ ED   GSA   LA +                 G ++G+  L
Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 247

Query: 244 VAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 134
           +  +   R+  L         RV + G  VT   GT+
Sbjct: 248 MFAKAEGRAEQL--------TRVEVSGNGVTFGRGTI 276

>TRAG_AGRTU (Q44360) Conjugal transfer protein traG|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 469 SSGKEVAD----VLPNIEEIRKCAGRGVIVTAPAPAGSGYD 359
           SSG  V D    V P I E R+ AGR VIV  P  +G G++
Sbjct: 249 SSGLVVLDPSSEVAPMISEHRRQAGRKVIVLDPTASGVGFN 289

>PURA_COLP3 (Q48A17) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 431

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = -2

Query: 448 DVLPNIEEIRKCAG----RGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVL 284
           DVL  +E ++ C G     G I+T P  A  GYD  T  +    G  E  V  ++  VL
Sbjct: 334 DVLDGLETLKICTGYKTEAGDIITVPPTAAEGYDKITPVYEEMPGWTESTVGATSVDVL 392

>VG14_BPMD2 (O64207) Gene 14 protein (Gp14)|
          Length = 485

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 369 DPAGAGAVTITPLPAHFLISSMFGRTSAT 455
           DP G GAV + PLP    +S ++G +  T
Sbjct: 203 DPHGLGAVPVVPLPNRTRLSDLYGTSEIT 231

>SYT_BURPS (Q63TM2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 378 LLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESWGNKNW*RFRYLQGAGH 211
           +L+ A    H    + L L  I+  A   VFWHP G   W        R L  AG+
Sbjct: 234 MLEEAEKRDHRKLGKQLDLFHIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGY 289

>SYT_BURMA (Q62KI2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 635

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 378 LLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESWGNKNW*RFRYLQGAGH 211
           +L+ A    H    + L L  I+  A   VFWHP G   W        R L  AG+
Sbjct: 234 MLEEAEKRDHRKLGKQLDLFHIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGY 289

>DDHD1_HUMAN (Q8NEL9) Probable phospholipase DDHD1 (EC 3.1.1.-) (DDHD domain|
           protein 1) (Phosphatidic acid-preferring phospholipase
           A1 homolog) (PA-PLA1)
          Length = 900

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 214 SRSLEIPETLPVFVSPAFHPNRVPKHSVHCHIPDPHQSQILGRKNV*RSHSPIQQAPVL 390
           S  L      P F++PA  P  V ++     IP P  S +L R++   S + I +A +L
Sbjct: 690 SNPLPYEHMKPSFLNPAKEPTSVSENEGISTIPSPVTSPVLSRRHYGESITNIGKASIL 748

>GPBAR_MOUSE (Q80SS6) G-protein coupled bile acid receptor 1 (Membrane-type|
           receptor for bile acids) (M-BAR)
          Length = 329

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
 Frame = +2

Query: 170 NPHSPILNIQLQV*CPAPWRYLKRYQFLFPQLSTPIGCQNTVCTATYRILINPKFWAEKT 349
           N  SP  N   Q   PAP+ YL+ Y  L P +         V    +R L   +      
Sbjct: 146 NHWSPDANCSSQAVFPAPYLYLEVYGLLLPAVGATALLSVRVLATAHRQLCEIRRLERAV 205

Query: 350 CEEVIARSSRRRCCNN-HASAGTLSNFFDVW 439
           C +V +  +R        A AG    F   W
Sbjct: 206 CRDVPSTLARALTWRQARAQAGATLLFLLCW 236

>LKH1_SCHPO (Q10156) Dual specificity protein kinase lkh1 (EC 2.7.12.1)|
          Length = 575

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 196 PAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSVHCH 306
           P+P +  + +  P  +P       HPNR+P H +H H
Sbjct: 56  PSPNLPHQPISKPPVIPNLPKLQVHPNRLP-HPIHNH 91

>ATP7B_RAT (Q64535) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)|
           (Wilson disease-associated protein homolog) (Pinal
           night-specific ATPase)
          Length = 1451

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 309 TGSSSIPNFGQKKRVKKS*PDPAGAGAVTITPLPAHFLISSM 434
           +GSSS+P+ G  +R ++  P P     +TIT +P    +  M
Sbjct: 334 SGSSSVPSLGSSQRQQE--PGPCRTAVLTITGIPRDSSVQPM 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,695,390
Number of Sequences: 219361
Number of extensions: 1727068
Number of successful extensions: 4384
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4378
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)