>gb|AY596540.1| Saccharum officinarum clone SCCCLR2001D07, complete sequence
          Length = 1804

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            |||||||| ||||| |||| ||| ||||| || ||||| |||||||| ||||| || |||
Sbjct: 1411 tccctgtcggggaagaggatgggtgcaacaagcgaccatatgaacagacctgccgtcgcc 1352

                                        
Query: 338  cactgggtcgcgatcctgacccagacag 365
            |||||||| || ||||||||||||||||
Sbjct: 1351 cactgggttgcaatcctgacccagacag 1324

>gb|AY105120.1| Zea mays PCO133097 mRNA sequence
          Length = 1778

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            |||||||| || || |||| ||| ||||| || ||||| |||||||| ||||| || |||
Sbjct: 1460 tccctgtcgggaaagaggacgggtgcaacaagcgaccatatgaacagacctgccgtcgcc 1401

                                        
Query: 338  cactgggtcgcgatcctgacccagacag 365
            |||||||| || ||||||||||||||||
Sbjct: 1400 cactgggttgcaatcctgacccagacag 1373

>ref|XM_468227.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1348 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1289

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1288 cactgggttgcaatcctgaccca 1266

>ref|XM_507542.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1696

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1355 cactgggttgcaatcctgaccca 1333

>ref|XM_507541.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1696

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1355 cactgggttgcaatcctgaccca 1333

>ref|XM_507023.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1249_F12.26 mRNA
          Length = 1741

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1430 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1371

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1370 cactgggttgcaatcctgaccca 1348

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                            
Query: 278      tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
                ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 33709595 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 33709654

                                       
Query: 338      cactgggtcgcgatcctgaccca 360
                |||||||| || |||||||||||
Sbjct: 33709655 cactgggttgcaatcctgaccca 33709677

>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 278   tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
             ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 78002 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 78061

                                    
Query: 338   cactgggtcgcgatcctgaccca 360
             |||||||| || |||||||||||
Sbjct: 78062 cactgggttgcaatcctgaccca 78084

>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 278   tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
             ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 40462 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 40521

                                    
Query: 338   cactgggtcgcgatcctgaccca 360
             |||||||| || |||||||||||
Sbjct: 40522 cactgggttgcaatcctgaccca 40544

>dbj|AK119191.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H03, full
            insert sequence
          Length = 1587

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1348 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1289

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1288 cactgggttgcaatcctgaccca 1266

>dbj|AK106174.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C06, full
            insert sequence
          Length = 1696

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1355 cactgggttgcaatcctgaccca 1333

>dbj|AK104731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C07, full
            insert sequence
          Length = 1696

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1415 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1356

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1355 cactgggttgcaatcctgaccca 1333

>dbj|AK068367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147C17, full
            insert sequence
          Length = 1742

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 278  tccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgttgcc 337
            ||||| || ||||| ||||| || || || |||||||| ||| |||| ||||| ||||||
Sbjct: 1430 tccctatcggggaagaggagtggggcgacaagggaccaaatgtacagacctgccgttgcc 1371

                                   
Query: 338  cactgggtcgcgatcctgaccca 360
            |||||||| || |||||||||||
Sbjct: 1370 cactgggttgcaatcctgaccca 1348

>gb|BT014207.1| Lycopersicon esculentum clone 133384F, mRNA sequence
          Length = 1582

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  aactccctgtctgggaacaggaggggagcaacgagggaccagatgaacaggcctgctgtt 334
            ||||| ||||| |||||||| |  ||||||||  | |||||||||||||   |||| |||
Sbjct: 1371 aactctctgtccgggaacagaattggagcaacctgagaccagatgaacaaagctgcagtt 1312

                                           
Query: 335  gcccactgggtcgcgatcctgacccagacag 365
            ||||||   ||| ||||||||||||||||||
Sbjct: 1311 gcccacccagtcacgatcctgacccagacag 1281

>emb|AL732547.8| Mouse DNA sequence from clone RP23-24E11 on chromosome 4, complete
              sequence
          Length = 206741

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 243    ctcttagcaggtaggtaaccaggttga 269
              |||||||| ||||||||||||||||||
Sbjct: 116387 ctcttagctggtaggtaaccaggttga 116361

>emb|AL158850.8| Human DNA sequence from clone RP3-522B19 on chromosome 6 Contains
            part of a novel gene, the 3' end of the gene for novel
            protein DKFZp451A175 (similar to M. musculus
            muscle-derived protein MDP77) and part of a novel gene,
            complete sequence
          Length = 91351

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 152  aatattacagaccagatacagatagt 177
            ||||| ||||||||||||||||||||
Sbjct: 1066 aatatcacagaccagatacagatagt 1041

>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete
              sequence
          Length = 249021

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 324    ggcctgctgttgcccactgggt 345
              ||||||||||||||||||||||
Sbjct: 166856 ggcctgctgttgcccactgggt 166835

>emb|AL512484.13| Human DNA sequence from clone RP11-26A3 on chromosome 13, complete
             sequence
          Length = 124446

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 48    ttcactgttgaaatactggcaacaa 72
             ||||||||||||||| |||||||||
Sbjct: 88532 ttcactgttgaaatagtggcaacaa 88508

>emb|AL133538.16| Human DNA sequence from clone RP11-550N16 on chromosome 6q26-27
             Contains a CpG island, complete sequence
          Length = 109238

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 48    ttcactgttgaaatactggcaacaa 72
             ||||||||||||||||||| |||||
Sbjct: 45287 ttcactgttgaaatactggaaacaa 45311

>gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, complete sequence
          Length = 174741

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    aatatatatacaaccaaagac 41
             |||||||||||||||||||||
Sbjct: 56426 aatatatatacaaccaaagac 56446

>gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, complete sequence
          Length = 169770

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    aatatatatacaaccaaagac 41
             |||||||||||||||||||||
Sbjct: 47539 aatatatatacaaccaaagac 47519

>ref|NM_101485.2| Arabidopsis thaliana unknown protein AT1G16180 mRNA, complete cds
          Length = 1471

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 298  gggagcaacgagggaccagatgaa 321
            ||||||||| ||||||||||||||
Sbjct: 1212 gggagcaacaagggaccagatgaa 1189

>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence
          Length = 204267

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 261    ccaggttgacctaaaactccctgt 284
              |||||||||||| |||||||||||
Sbjct: 106535 ccaggttgacctcaaactccctgt 106558

>emb|AL683871.15| Human DNA sequence from clone RP13-76L22 on chromosome X, complete
              sequence
          Length = 175765

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     tcactgttgaaatactggca 68
              ||||||||||||||||||||
Sbjct: 122573 tcactgttgaaatactggca 122592

>dbj|AK221101.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-88-C14
          Length = 391

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 298 gggagcaacgagggaccagatgaa 321
           ||||||||| ||||||||||||||
Sbjct: 183 gggagcaacaagggaccagatgaa 160

>gb|AC157653.2| Mus musculus BAC clone RP24-325H17 from chromosome 7, complete sequence
          Length = 168825

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   caggttgacctaaaactccc 281
             ||||||||||||||||||||
Sbjct: 42034 caggttgacctaaaactccc 42015

>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 13     tcaacttcaatatatatacaaccaaaga 40
              |||| |||||| ||||||||||||||||
Sbjct: 130172 tcaaattcaatgtatatacaaccaaaga 130145

>emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, complete sequence
          Length = 157845

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    tttgctcacacaatattaca 160
              ||||||||||||||||||||
Sbjct: 123362 tttgctcacacaatattaca 123381

>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete
             sequence
          Length = 80442

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 298   gggagcaacgagggaccagatgaa 321
             ||||||||| ||||||||||||||
Sbjct: 77894 gggagcaacaagggaccagatgaa 77871

>emb|BX005136.8| Mouse DNA sequence from clone RP23-449C14 on chromosome 2, complete
              sequence
          Length = 178200

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    accaggttgacctaaaactc 279
              ||||||||||||||||||||
Sbjct: 132620 accaggttgacctaaaactc 132639

>gb|AC150895.2| Mus musculus BAC clone RP24-274J5 from 7, complete sequence
          Length = 179893

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    caggttgacctaaaactccc 281
              ||||||||||||||||||||
Sbjct: 158522 caggttgacctaaaactccc 158503

>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   accaggttgacctaaaactc 279
             ||||||||||||||||||||
Sbjct: 17013 accaggttgacctaaaactc 17032

>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    accaggttgacctaaaactc 279
              ||||||||||||||||||||
Sbjct: 103653 accaggttgacctaaaactc 103672

>emb|AL611982.26| Mouse DNA sequence from clone RP23-348F1 on chromosome 4, complete
              sequence
          Length = 171559

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    accaggttgacctaaaactc 279
              ||||||||||||||||||||
Sbjct: 128064 accaggttgacctaaaactc 128045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,984,219
Number of Sequences: 3902068
Number of extensions: 2984219
Number of successful extensions: 46946
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46870
Number of HSP's gapped (non-prelim): 76
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)