ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_TOXGO (O20672) Cytochrome b 30 3.4
2CYB_AUSSU (Q9MLL3) Cytochrome b 29 7.6
3VP282_ARATH (O65421) VPS28 protein homolog 2 28 9.9

>CYB_TOXGO (O20672) Cytochrome b|
          Length = 368

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 481 ALLAGYLFLCILVYLNQGLYSXIY 410
           A  A ++FLCIL+++ +GLY+  Y
Sbjct: 83  ATTASFVFLCILIHMTRGLYNWSY 106



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>CYB_AUSSU (Q9MLL3) Cytochrome b|
          Length = 367

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 481 ALLAGYLFLCILVYLNQGLYSXIYISIKV 395
           A+ A   F+CI +++ +GLY  +Y++ KV
Sbjct: 76  AIGASMFFICIYIHIARGLYYGLYLNKKV 104



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>VP282_ARATH (O65421) VPS28 protein homolog 2|
          Length = 209

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 223 SSNVDVMAGVVSECIVGFIYVMDDGGRALYAIDRIHS*SCILDDVLAPLS 74
           S++    A VV+EC+  FI  MD     + A+D+++    +L D+ A L+
Sbjct: 104 SASTSSSASVVAECVQNFITSMDSLKLNMVAVDQVYP---LLSDLSASLN 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,485,327
Number of Sequences: 219361
Number of extensions: 1461072
Number of successful extensions: 3966
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3966
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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