Clone Information

BLAST Search Result

Clone Name	rbart57a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YHL1_EBV (P03181) Hypothetical protein BHLF1	36	0.049
2	DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)	35	0.084
3	TBX1_HUMAN (O43435) T-box transcription factor TBX1 (T-box prote...	35	0.084
4	TNFL6_FELCA (Q861W5) Tumor necrosis factor ligand superfamily me...	35	0.14
5	CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End...	35	0.14
6	PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:...	34	0.19
7	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	34	0.24
8	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	33	0.32
9	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	33	0.41
10	PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1...	33	0.41
11	COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor	33	0.54
12	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	33	0.54
13	CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor	33	0.54
14	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	32	0.71
15	TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily memb...	32	0.71
16	COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-...	32	0.71
17	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	32	0.92
18	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	32	0.92
19	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	32	0.92
20	COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor	32	0.92
21	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	32	1.2
22	CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor	32	1.2
23	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	31	1.6
24	TNFL6_MACNE (P63306) Tumor necrosis factor ligand superfamily me...	31	1.6
25	TNFL6_MACMU (P63307) Tumor necrosis factor ligand superfamily me...	31	1.6
26	TNFL6_MACFA (P63308) Tumor necrosis factor ligand superfamily me...	31	1.6
27	TNFL6_CERTO (Q9BDN1) Tumor necrosis factor ligand superfamily me...	31	1.6
28	TNFL6_HUMAN (P48023) Tumor necrosis factor ligand superfamily me...	31	1.6
29	LBXCO_RAT (P84551) Ladybird homeobox corepressor 1	31	1.6
30	LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcript...	31	1.6
31	COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor	31	1.6
32	CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor	31	1.6
33	CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor	31	1.6
34	CAF1_EPHMU (P18856) Collagen EMF1-alpha precursor (Fibrillar col...	31	1.6
35	MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3)...	31	1.6
36	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	31	2.1
37	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	31	2.1
38	ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulen...	31	2.1
39	CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)	30	2.7
40	COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor	30	2.7
41	KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription fact...	30	2.7
42	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	30	2.7
43	PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precur...	30	2.7
44	CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor	30	2.7
45	COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor	30	2.7
46	CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor	30	2.7
47	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	30	2.7
48	COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragm...	30	2.7
49	GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ...	30	3.5
50	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	30	3.5
51	GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outg...	30	3.5
52	GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment)	30	3.5
53	GLI3_CHICK (P55879) Zinc finger protein GLI3 (Fragment)	30	3.5
54	GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ...	30	3.5
55	CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor	30	3.5
56	GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)	30	3.5
57	CAS4_EPHMU (P18503) Short-chain collagen C4 (Fragment)	30	3.5
58	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	30	3.5
59	CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Letha...	30	3.5
60	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	30	3.5
61	SECR_PIG (P63298) Secretin precursor (Fragment)	30	3.5
62	PDE4C_HUMAN (Q08493) cAMP-specific 3',5'-cyclic phosphodiesteras...	30	3.5
63	LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1	30	4.6
64	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	30	4.6
65	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	30	4.6
66	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	30	4.6
67	ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)	30	4.6
68	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	30	4.6
69	CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)	30	4.6
70	HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated c...	30	4.6
71	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	30	4.6
72	SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D p...	30	4.6
73	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	30	4.6
74	SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Sh...	30	4.6
75	CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor	30	4.6
76	CARA_BRUSU (Q8FZJ8) Carbamoyl-phosphate synthase small chain (EC...	29	6.0
77	CARA_BRUME (Q8YIB8) Carbamoyl-phosphate synthase small chain (EC...	29	6.0
78	SCO1_HUMAN (O75880) SCO1 protein homolog, mitochondrial precursor	29	6.0
79	COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor	29	6.0
80	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	29	6.0
81	CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor	29	6.0
82	CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor	29	6.0
83	CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)	29	6.0
84	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	29	6.0
85	COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Co...	29	6.0
86	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	29	6.0
87	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	29	6.0
88	CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP ...	29	6.0
89	PRPE_HUMAN (P02811) Basic proline-rich peptide P-E (IB-9)	29	6.0
90	COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibr...	29	6.0
91	BDNF_CYPCA (Q90322) Brain-derived neurotrophic factor precursor ...	29	7.8
92	COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor	29	7.8
93	YAP1_MOUSE (P46938) 65 kDa Yes-associated protein (YAP65)	29	7.8
94	CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)	29	7.8
95	GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)	29	7.8
96	CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor	29	7.8
97	CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor	29	7.8
98	SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D pre...	29	7.8
99	KLF2_MOUSE (Q60843) Krueppel-like factor 2 (Lung krueppel-like f...	29	7.8
100	POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p...	29	7.8
101	RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec...	29	7.8
102	SYFB_THEFY (Q47N76) Phenylalanyl-tRNA synthetase beta chain (EC ...	29	7.8
103	COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morpholog...	29	7.8
104	CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor	29	7.8

>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG     +  T GRP AP AP +P APG
Sbjct: 545 PPPGAGQRPSGPTGGRPAAPGAPGTPAAPG 574



 Score = 36.2 bits (82), Expect = 0.049
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG     +  T GRP AP AP +P APG
Sbjct: 420 PPPGAGQRPSGPTGGRPAAPGAPGTPAAPG 449



 Score = 36.2 bits (82), Expect = 0.049
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG     +  T GRP AP AP +P APG
Sbjct: 295 PPPGAGQRPSGPTGGRPAAPGAPGTPAAPG 324



 Score = 36.2 bits (82), Expect = 0.049
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG     +  T GRP AP AP +P APG
Sbjct: 170 PPPGAGQRPSGPTGGRPAAPGAPGTPAAPG 199

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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG +GD G  G  G+P  D A G + P G +GAP
Sbjct: 161 LPGDQGDKGEAGQPGQPGSDAAPGEQGPKGPNGAP 195

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>TBX1_HUMAN (O43435) T-box transcription factor TBX1 (T-box protein 1)|
           (Testis-specific T-box protein)
          Length = 398

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 16/54 (29%)
 Frame = +2

Query: 383 PWPPPGRRSPCARSTAGRPTAPPAPWS----------------PRAPGTSCWSA 496
           P PPP R  PCA +  G P  PP P +                P  PG SC +A
Sbjct: 43  PPPPPPRYDPCAAAAPGAPGPPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAA 96

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>TNFL6_FELCA (Q861W5) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) [Contains:
           Tumor necrosis factor ligand superfamily member 6,
           membrane form; Tumor necrosis factor ligand superfamily
           member 6, solub
          Length = 280

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP--TAPPAPWSPRAP 475
           +PW PPG   PC  S  GRP    PP P  P  P
Sbjct: 21  SPWGPPGSVLPCPSSVPGRPGQRRPPPPPPPTLP 54

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>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           VPG RGD G  G  G+P V    GL    G HG P
Sbjct: 389 VPGIRGDQGPSGLAGKPGVPGERGL---PGAHGPP 420



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVD-----RAHGLRRPGGGHGA 379
           VPG RG+ GA G  G P VD      A GL  P G  GA
Sbjct: 259 VPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGA 297



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPG--GGHGAP 376
           PG RGD G  G  G P +    G+  PG  G  G P
Sbjct: 146 PGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVP 181



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPG--GGHGAP 376
           PG  G  G GGA G P +    GL +PG  G  GAP
Sbjct: 213 PGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAP 248

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>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           PPPG   P AR   G P  PP P  PR P
Sbjct: 642 PPPGPAPPGARPPPGPPPPPPGPSPPRPP 670



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 621 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 650



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 600 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 629



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 579 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 608



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 558 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 587



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 537 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 566



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 516 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 545



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 495 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 524



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 474 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 503



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 383 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 412



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 362 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 391



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 341 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 370



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 320 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 349



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 299 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 328



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 278 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 307



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 257 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 286



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 236 PPPGPAPPGARPPPGPPPLGPPPPGPAPPG 265



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 215 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 244



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 194 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 223



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 173 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 202



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 152 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 181



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 131 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 160



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 110 PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 139



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           PPPG   P AR   G P   P P  P  PG
Sbjct: 89  PPPGPAPPGARPPPGPPPPGPPPPGPAPPG 118

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARST------------AGRPTAPPAPWSPRAP 475
           GA  PPPG  +P  R++             G PT PPAP SP AP
Sbjct: 774 GADGPPPGPPTPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAP 818

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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           VPG RGD G  G  G+P +    GL    G HG P
Sbjct: 385 VPGIRGDQGPNGLAGKPGLPGERGL---PGAHGPP 416



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPG--GGHGAP 376
           PG RGD G  G  G P +    G+  PG  G  GAP
Sbjct: 142 PGIRGDQGLRGPPGPPGLPGPSGITVPGKPGAQGAP 177



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVD-----RAHGLRRPGGGHGA 379
           VPG+RG+ GA G  G P VD      A G+  P G  GA
Sbjct: 255 VPGSRGEPGAVGPKGPPGVDGVGIPGAAGVPGPQGPVGA 293

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G +GA G  G P    A G   P G  GAP
Sbjct: 383 PGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAP 416



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG  G+ G  G+ G P  D   G + P G  G+P
Sbjct: 469 LPGPPGERGGPGSRGFPGADGVAGPKGPSGERGSP 503

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>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Brn-3.0)
          Length = 421

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = -2

Query: 486 HDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           HD PG  G  G GG  G        G   PGGG GAP
Sbjct: 144 HDGPGGGGGPGGGGGPGGGGPGGGGGGGGPGGGGGAP 180

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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G+ G+ G  G+P      GL  P G  G P
Sbjct: 373 PGAKGERGSSGLDGKPGYPGEPGLNGPKGNPGLP 406

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  G+ G  G  G+P +    G   P GGHG P
Sbjct: 2152 PGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDP 2185

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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG +GDHG  G  GRP  D   G     G +G P
Sbjct: 621 IPGLKGDHGLPGLPGRPGSDGLPGYPGGPGQNGFP 655



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 480  VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            VPG  G+HG  G  G P  D   G     G  G P
Sbjct: 989  VPGYPGEHGTDGLPGLPGADGQPGFVGEAGEPGTP 1023

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 474 GARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           G+ G+ GA G  G P    A G R P G +GAP
Sbjct: 467 GSPGEPGANGVPGNPGERGAPGFRGPAGPNGAP 499



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +G+ G  G  G P +  A G   P G +GAP
Sbjct: 391 PGGKGEMGPAGIPGAPGLLGARGPPGPAGANGAP 424



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/35 (48%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           VPG +GD GA G  G P      GLR   GG G P
Sbjct: 669 VPGGKGDSGAPGERGPPGTAGTPGLR---GGAGPP 700



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG RG+HG  G  G P     +G     G  GAP
Sbjct: 796 PGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP 829

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>TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily m
          Length = 282

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAPGT 481
           +PW  PG   PC  S  GRP     PP P  P  P T
Sbjct: 21  SPWASPGSVFPCPASVPGRPGQRRPPPPPPPPPPPPT 57

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>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           PGA GD G  G  GRP  D A G   P G  G
Sbjct: 156 PGAPGDPGEAGTPGRPGTDAAPGSPGPRGPPG 187

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 18/34 (52%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA G  GA GA G P V  A GL  P G  G P
Sbjct: 298 PGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPP 331



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q   PG +G+ GA G  G P    A GL    G  GAP
Sbjct: 190 QPGAPGTKGEPGAPGENGTPGQPGARGLPGERGRIGAP 227



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           PG RGD GA G  G   +  A G   P GG G
Sbjct: 658 PGLRGDTGATGRDGARGLPGAIGAPGPAGGAG 689

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G  GA G  G P    A G   P G  GAP
Sbjct: 383 PGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAP 416



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG  G+ GA G+ G P  D   G + P G  G+P
Sbjct: 469 LPGPAGERGAPGSRGFPGADGIAGPKGPPGERGSP 503

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +G+ G  G  G P +  A G   P G +GAP
Sbjct: 392 PGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           VPGA+G+ G  G+ G P    A+GL    G  GAP
Sbjct: 457 VPGAKGEDGKDGSPGEPG---ANGLPGAAGERGAP 488



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +GD GA G  G P +  A GLR   GG G P
Sbjct: 671 PGGKGDAGAPGERGPPGLAGAPGLR---GGAGPP 701



 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAPXXXXXXXXX*ELAQGQVPQG 316
           +PGA G+ GA G  G    +   G + P G  GAP          E  +  VP G
Sbjct: 478 LPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +GD GA GA G      A G R P G  GAP
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAP 692



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 495 ADQHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           A +   PG  G  GA G  GR  V    G+R   G  G P
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           ++  PG  G  GA G  GRP +  A G R   G  G+
Sbjct: 292 ENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGS 328

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>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G+ G+ G+ G+P      GL  P G  G P
Sbjct: 373 PGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLP 406



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G+ G  G  G+P +    G   P G  G P
Sbjct: 319 PGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIP 352



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +2

Query: 377 GAPWP--PPGRRSPCARSTAGRPTAPPAPWSPRAPGT 481
           G P P  PPG R P      G+P A  AP  P  PGT
Sbjct: 247 GPPGPQGPPGERGP---EGIGKPGAAGAPGQPGIPGT 280

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG  G+ G  G+ G P  D   G + P G  GAP
Sbjct: 469 LPGPPGERGGPGSRGFPGADGVAGPKGPSGERGAP 503



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G +GA G  G P    A G   P G  G P
Sbjct: 383 PGAKGANGAPGIAGAPGFPGARGPSGPQGPSGPP 416



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -2

Query: 474 GARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           G RGD G  GA G P  D A GL  P G  G
Sbjct: 732 GDRGDAGPKGADGSPGKDGARGLTGPIGPPG 762

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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PG  GD G  GA G+P    A GL  P G  G+
Sbjct: 304 PGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGS 336



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 492 DQHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           D+   PG +G  G  G  G P +D   G R P G  G P
Sbjct: 266 DERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPP 304

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG +G+ G  G  G P V    GL  P G  G P
Sbjct: 416 LPGPKGEKGDSGIPGAPGVQGPPGLAGPPGAKGEP 450

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>TNFL6_MACNE (P63306) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAP 475
           +PW PPG   PC  S   RP     PP P  P  P
Sbjct: 21  SPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLP 55

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>TNFL6_MACMU (P63307) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAP 475
           +PW PPG   PC  S   RP     PP P  P  P
Sbjct: 21  SPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLP 55

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>TNFL6_MACFA (P63308) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAP 475
           +PW PPG   PC  S   RP     PP P  P  P
Sbjct: 21  SPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLP 55

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>TNFL6_CERTO (Q9BDN1) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (Protein
           CD95L) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily
          Length = 280

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAP 475
           +PW PPG   PC  S   RP     PP P  P  P
Sbjct: 21  SPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLP 55

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>TNFL6_HUMAN (P48023) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) (Apoptosis antigen ligand) (APTL) [Contains:
           Tumor necrosis factor ligand superfamily member 6,
           membrane form; Tumor
          Length = 281

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRP---TAPPAPWSPRAP 475
           +PW PPG   PC  S   RP     PP P  P  P
Sbjct: 21  SPWAPPGTVLPCPTSVPRRPGQRRPPPPPPPPPLP 55

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>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           AP PPP +   C    A  P  PP P   RA G
Sbjct: 315 APGPPPHKSLRCGEDEASGPPGPPPPHPQRALG 347

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>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           AP PPP +   C    A  P  PP P   RA G
Sbjct: 315 APGPPPHKSLRCGEDEAAGPPGPPPPHPQRALG 347

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>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG RG  GA G +G P      G   P G  GAP
Sbjct: 1057 PGERGSAGAAGPIGLPGRPGPQGPPGPAGEKGAP 1090



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PGA G+ GA G  G+P      G   P G  GA
Sbjct: 859 PGANGEKGARGIAGKPGPRGQRGPTGPRGSRGA 891

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>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +G+ G  GA G P +    G   PGGG G P
Sbjct: 369 PGQKGEPGRAGATGEPGLLGPPG--PPGGGRGTP 400

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>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G +GA G  G P    A G   P G  G P
Sbjct: 390 PGAKGANGAPGIAGAPGFPGARGPSGPQGPSGPP 423



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG  G+ G  G+ G P  D   G + P G  G+P
Sbjct: 476 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP 510

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>CAF1_EPHMU (P18856) Collagen EMF1-alpha precursor (Fibrillar collagen)|
           (Fragment)
          Length = 547

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           VPG  GD G  G  G   +D A G + P G  G P
Sbjct: 2   VPGPNGDVGPAGPTGPAGLDGAPGAQGPDGEPGLP 36

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>MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3) (SL-3) (Matrix|
           metalloproteinase-11) (MMP-11)
          Length = 488

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAPGTSC 487
           G PWP    R+P     AG  T   AP  P AP  +C
Sbjct: 258 GQPWPTVTSRTPALGPQAGIDTNEIAPLEPDAPPDAC 294

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G +GA G  G P    A G   P G  G P
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427



 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG  G+ G  G+ G P  D   G + P G  G+P
Sbjct: 480 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP 514

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +2

Query: 251 RPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTA 430
           RP   P P   A      R     G  P              G P  PPG   P  +++ 
Sbjct: 547 RPPASPSPQRQAGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606

Query: 431 GRP---TAPPAPWSPRAPG 478
             P   T PP    PR  G
Sbjct: 607 AGPGPRTGPPTTQQPRPSG 625

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>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAPGT 481
           GAP PP    +P   +T   P  P  P +P  P T
Sbjct: 155 GAPEPPATPATPATPATPATPATPATPATPATPAT 189

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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 474 GARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           GA+GD G  G  GRP      G   P G  GAP
Sbjct: 259 GAKGDGGPTGEQGRPGAPGVKGSSGPPGDVGAP 291

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>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G+ G  G  G+P      GL  P G  G P
Sbjct: 366 PGAKGERGLPGLDGKPGYPGEQGLPGPKGHPGLP 399

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>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 383 PWPPPGRRSPCARSTAGRPTAPPAP-WS 463
           P PPPG   P +   AG P APP+P WS
Sbjct: 102 PAPPPGPE-PASPGQAGAPAAPPSPAWS 128

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 474 GARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           G +GD G  GA G P +   HG   P G  GA
Sbjct: 524 GTKGDPGPPGAEGPPGLPGKHGASGPPGNKGA 555



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  GD G  G+ G P      G R P G  G P
Sbjct: 1044 PGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDP 1077

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>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 383 PWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           P PPPG+     +    RP  PP P  P+ P
Sbjct: 233 PPPPPGKPQGPPQQGGNRPQGPPPPGKPQGP 263

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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PG  G+ G  GA G+P    A GL  P G  G+
Sbjct: 304 PGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGS 336



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 492 DQHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           D+   PG +G  G  G  G P +D   G R P G  G P
Sbjct: 266 DERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPPGPP 304

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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PGA G+ GA G  G+P      G   P G  GA
Sbjct: 861 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA 893



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+GD G  G  G P      G R P G  G P
Sbjct: 594 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 627

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>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG RG  GA G +G P      G   P G  GAP
Sbjct: 1089 PGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAP 1122



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  G  G  GA G+P  D   G+  P G  G P
Sbjct: 1419 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1452

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q+ VPG  G+ G+ G  G P  +   G + P G  G+P
Sbjct: 474 QNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGERGSP 511

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>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PGA G+ GA G  G+P      G   P G  GA
Sbjct: 628 PGANGEKGARGVAGKPGPRGQRGPTGPRGSRGA 660



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG RG  G  G +G P      G   P G  GAP
Sbjct: 826 PGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAP 859



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+GD G  G  G P      G R P G  G P
Sbjct: 361 PGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 394

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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 329 KYPRGHKIFTDPTSLHKKVVRVHAPD 252
           K P   K +TDP+SL K V  VH PD
Sbjct: 368 KLPGCTKRYTDPSSLRKHVKTVHGPD 393

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +2

Query: 251 RPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTA 430
           RP   P P   A      R     G  P              G P  PPG   P  +++ 
Sbjct: 275 RPPASPSPQRQAGPPQATRQTSVSGQAPPKASGAPPSGQQRQGPPQKPPGPAGPTRQASQ 334

Query: 431 GRP---TAPPAPWSPRAPG 478
             P   T PP    PR  G
Sbjct: 335 AGPMPRTGPPTTQQPRPSG 353

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>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +2

Query: 377  GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
            GAP PPP  R+   RS + R TAPP   + R PG
Sbjct: 953  GAPAPPPAARAGPGRSGSVR-TAPPDGAAKRPPG 985

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>GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment)|
          Length = 556

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 329 KYPRGHKIFTDPTSLHKKVVRVHAPD 252
           K P   K +TDP+SL K V  VH PD
Sbjct: 377 KIPGCTKRYTDPSSLRKHVKTVHGPD 402

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>GLI3_CHICK (P55879) Zinc finger protein GLI3 (Fragment)|
          Length = 663

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 329 KYPRGHKIFTDPTSLHKKVVRVHAPD 252
           K P   K +TDP+SL K V  VH PD
Sbjct: 364 KIPGCTKRYTDPSSLRKHVKTVHGPD 389

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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 329 KYPRGHKIFTDPTSLHKKVVRVHAPD 252
           K P   K +TDP+SL K V  VH PD
Sbjct: 365 KLPGCTKRYTDPSSLRKHVKTVHGPD 390

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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PG  GD G  G+ G P    A GL  P G  GA
Sbjct: 302 PGPDGDAGKAGSPGLPGEPGADGLTGPDGSPGA 334



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +  +PG  G  G  G  G P +D   G R P G  G P
Sbjct: 265 ERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPGPP 302

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>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)|
          Length = 1258

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 329 KYPRGHKIFTDPTSLHKKVVRVHAPD 252
           K P   K +TDP+SL K V  VH PD
Sbjct: 239 KIPGCTKRYTDPSSLRKHVKTVHGPD 264

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>CAS4_EPHMU (P18503) Short-chain collagen C4 (Fragment)|
          Length = 366

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA G  GA GA G P +    G + P G  G P
Sbjct: 42  PGAPGPQGAPGAPGAPGLPGPAGPQGPKGDKGLP 75

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 383  PWPPPGRRSPCARSTAGRPTAPPAPWSPRAPGTS 484
            P  PPGR     R+ AG    PPAP SPR P ++
Sbjct: 1208 PKQPPGRGLGPGRAQAG--ARPPAPRSPRLPAST 1239

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>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 489  QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            Q  +PG +G+ G  G  G+P      GL+  GG  G P
Sbjct: 1347 QPGIPGLKGEVGGAGLPGQPGFPGIPGLKGEGGLPGFP 1384



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG +GD G GG  G P V    G+    G  G P
Sbjct: 414 LPGPKGDKGDGGIPGAPGVSGPSGIPGLPGPKGEP 448



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 480  VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            +PG RG+ G  G  GR       GL+   GG G P
Sbjct: 1329 IPGKRGEDGLPGVPGRDGQPGIPGLKGEVGGAGLP 1363



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 489  QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            Q  VPG RGD G GG  G P      G     G +G P
Sbjct: 1153 QPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYP 1190

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +2

Query: 251 RPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTA 430
           RP   P P   A      R     G  P              G P  PPG   P  +++ 
Sbjct: 545 RPPASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQRQGPPQKPPGPAGPIRQASQ 604

Query: 431 GRP---TAPPAPWSPRAPG 478
             P   T PP    PR  G
Sbjct: 605 AGPGPRTGPPTTQQPRPSG 623

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>SECR_PIG (P63298) Secretin precursor (Fragment)|
          Length = 131

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
 Frame = +2

Query: 242 VHERPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXG-APWPPPGRRSPCA 418
           V +R   +PE  +    SG  R C  W   P                +PW PPG R   A
Sbjct: 56  VGKRSQQDPENNTAWTKSGEDRLCQLWSHMPALQAWMPMKPPVDQAWSPWLPPGLR---A 112

Query: 419 RSTAGRPTAPPAPWSPRAP 475
            +    P  P A  SP  P
Sbjct: 113 GALVSEPAIPAAEGSPMPP 131

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>PDE4C_HUMAN (Q08493) cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC|
           3.1.4.17) (DPDE1) (PDE21)
          Length = 712

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +3

Query: 201 TPRNRPRSRVMFWPSMSVRRMNPNHFLMQRRRVGEDLVSPGVLVLERALIDADLVLHVPE 380
           +PR   R   + WP  S RR +  + L   RR  +   SPG+            ++  P 
Sbjct: 62  SPRPELRKSRLSWPVSSCRRFDLENGLSCGRRALDPQSSPGL----------GRIMQAPV 111

Query: 381 PHGLRRVAVVHARD 422
           PH  RR + ++  D
Sbjct: 112 PHSQRRESFLYRSD 125

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>LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1|
          Length = 965

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 380 APWPPPGRRSPCARSTAGRPTAPPAPWSPRAPG 478
           AP PPP +   C    A  P  PP P   R  G
Sbjct: 317 APGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLG 349

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG RG+HG  G  G P     +G     G  GAP
Sbjct: 796 PGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAP 829



 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +G+ G  G  G P +  A G   P G +G P
Sbjct: 391 PGGKGEMGPAGIPGAPGLIGARGPPGPAGTNGIP 424

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q   PG +G+ GA G  G P    A GL    G  GAP
Sbjct: 191 QPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAP 228

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q   PG +G+ GA G  G P    A GL    G  GAP
Sbjct: 191 QPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAP 228

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>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)|
          Length = 348

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG RG  GA G  GRP  D   G+    G  GAP
Sbjct: 207 PGLRGMRGARGQPGRPGRDGNPGMPGDCGPPGAP 240

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           PPP R+      T G+P +PP  +SP +P
Sbjct: 582 PPPHRQPRPPTPTYGQPPSPPTTYSPPSP 610

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>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)|
          Length = 378

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 152 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 184



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 143 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 175



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 134 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 166



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 125 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 157



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 116 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 148



 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 377 GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           GAP  P G  +P A +  G P AP    +P AP
Sbjct: 107 GAPAAPAGDGAPAAPAGDGAPAAPAGDGAPAAP 139

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>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 392 PPGRRSPCARSTAGRPTAPPAPWSPRAPGTS 484
           PPG   P A       + P AP SPRAP TS
Sbjct: 734 PPGPLPPAASPGPPAASPPAAPSSPRAPRTS 764

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 392 PPGRRSPCARSTAGRPTAPPAPWSPRAPGTS 484
           PPG   P A       + P AP SPRAP TS
Sbjct: 734 PPGPLPPAASPGPPAASPPAAPSSPRAPRTS 764

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>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 369

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +GD G  G VG P +  + G     G  GAP
Sbjct: 132 PGPKGDTGPKGGVGAPGIQGSPGPAGLKGERGAP 165

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +2

Query: 251 RPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTA 430
           RP   P P   A      R     G  P              G P  PPG   P  +++ 
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQ 606

Query: 431 GRP---TAPPAPWSPRAPG 478
             P   T PP    PR  G
Sbjct: 607 AGPVPRTGPPTTQQPRPSG 625

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>SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Shank3)|
           (Proline-rich synapse associated protein 2) (ProSAP2)
           (SPANK-2)
          Length = 1815

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
 Frame = +2

Query: 236 LAVHERPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRR--S 409
           +A    PA  PEPLS A          P G  P                    PGRR  S
Sbjct: 8   VAAAAAPAEPPEPLSPALAPAP----APPGPLPRSAVGGTLAGGQGG------PGRRAES 57

Query: 410 PCARSTAGRPTAPPAPWSPRAPGTS 484
           PCA  +AG    P A      PG S
Sbjct: 58  PCAPLSAGNSQGPGASTGMDGPGAS 82

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>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q   PG +G+ GA G  G P    A GL    G  GAP
Sbjct: 189 QPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAP 226

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>CARA_BRUSU (Q8FZJ8) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 407

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 476 LAPGATMVQVVPWGGLQWIARMDYGDPAEAMGLRYVQYEIGVDESSLKDKYPRGHKIFTD 297
           LA   T+ Q + W  L W  +  YG+  +A     V  + GV  + L+     G K+   
Sbjct: 177 LAKDVTIGQSLVWKELPWTLQDGYGE-QDAPQYHVVALDFGVKRNILRLLTGLGAKVTVL 235

Query: 296 PTSLHKKVVRVHAPD 252
           P +   + V  H PD
Sbjct: 236 PATATAEDVLAHNPD 250

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>CARA_BRUME (Q8YIB8) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 407

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 476 LAPGATMVQVVPWGGLQWIARMDYGDPAEAMGLRYVQYEIGVDESSLKDKYPRGHKIFTD 297
           LA   T+ Q + W  L W  +  YG+  +A     V  + GV  + L+     G K+   
Sbjct: 177 LAKDVTIGQSLVWKELPWTLQDGYGE-QDAPQYHVVALDFGVKRNILRLLTGLGAKVTVL 235

Query: 296 PTSLHKKVVRVHAPD 252
           P +   + V  H PD
Sbjct: 236 PATATAEDVLAHNPD 250

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>SCO1_HUMAN (O75880) SCO1 protein homolog, mitochondrial precursor|
          Length = 301

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/55 (25%), Positives = 16/55 (29%)
 Frame = +2

Query: 320 WGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTAGRPTAPPAPWSPRAPGTS 484
           WG                    W   GR   C  +       PP PWS + PG S
Sbjct: 30  WGPAEGTARVLLRQFCARQAEAWRASGRPGYCLGTRPLSTARPPPPWSQKGPGDS 84

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>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PGA+G+ G  G  G P +  + G   P G  G P
Sbjct: 319 PGAKGERGPAGHPGEPGLPGSPGNMGPQGPKGIP 352

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           +PG +GD GA G  G P    A G   P GG G P
Sbjct: 514 IPGGKGDSGAPGERGPPG---AGGPPGPRGGAGPP 545



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG +G+ G  G  G P +  A G   P G +G P
Sbjct: 236 PGGKGEMGPAGIPGAPGLIGARGPPGPPGTNGVP 269

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>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  G  G  GA G+P  D   G+  P G  G P
Sbjct: 1421 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1454



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG RG  GA G +G P      G   P G  G P
Sbjct: 1091 PGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVP 1124

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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  G  G  GA G+P  D   G+  P G  G P
Sbjct: 1421 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1454



 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG RG  GA G +G P      G   P G  G P
Sbjct: 1091 PGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVP 1124

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>CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)|
          Length = 471

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 489 QHDVPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           Q   PGA GD G+ G  G P V    G R   G +G P
Sbjct: 78  QRGPPGAIGDMGSPGHPGAPGVPGQPGARGDPGFYGFP 115

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
 Frame = +2

Query: 251 RPAHEPEPLSYAATSGR*RSCVPWGTCPXXXXXXXXXXXXXXGAPWPPPGRRSPCARSTA 430
           RP   P P   A      R     G  P              G P  PPG   P  +++ 
Sbjct: 547 RPPASPSPQRQAGPPQATRQTSVSGQAPPKASGVPPGGQQRQGPPQKPPGPAGPTRQASQ 606

Query: 431 GRP---TAPPAPWSPRAPG 478
             P   T PP    PR  G
Sbjct: 607 AGPMPRTGPPTTQQPRPSG 625

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>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:|
           Endostatin]
          Length = 1516

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 480 VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           +PGA+G+ GA G  G P +    G+  P G  G
Sbjct: 829 LPGAKGEVGADGVPGFPGLPGREGIAGPQGPKG 861

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PG  G  G  GA G+P  D   G+  P G  G P
Sbjct: 1419 PGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLP 1452

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           PG RG  G  GA G P  D  +G + P G  G
Sbjct: 513 PGERGHPGLAGARGAPGPDGNNGAQGPPGPQG 544

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>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase A) (Class-II chitin
           synthase A)
          Length = 1013

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 389 PPPGRRSPCARSTAGRPTAPPAPWSP 466
           PP    +   R TA RP +P  PWSP
Sbjct: 52  PPTASGADEMRYTASRPASPARPWSP 77

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>PRPE_HUMAN (P02811) Basic proline-rich peptide P-E (IB-9)|
          Length = 61

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 383 PWPPPGRRSPCARSTAGRPTAPPAPWSPRAP 475
           P PPPG+          RP  PP P  P+ P
Sbjct: 20  PPPPPGKPQGPPPQGGNRPQGPPPPGKPQGP 50

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>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PGA G  G  G  GRP      G++ P G  G P
Sbjct: 2954 PGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGMP 2987

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>BDNF_CYPCA (Q90322) Brain-derived neurotrophic factor precursor (BDNF)|
          Length = 270

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
 Frame = -2

Query: 495 ADQHDVPGARGDHGAGGAVGRPAV--------DRAHGLRRPGGG 388
           A   ++PG +G H A G +G  A          R HG  + GGG
Sbjct: 19  APMREIPGVQGGHRAEGYLGAAAAAAAAITSGSRGHGTPQSGGG 62

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>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 383  PWPPPGRRSPCARSTAGRPTAPPAPWSPRAPGTS 484
            P  PPG R    +  A  P  PP P SP   G S
Sbjct: 2839 PMGPPGDRGFTGKDGAMGPRGPPGPGSPGVTGPS 2872

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>YAP1_MOUSE (P46938) 65 kDa Yes-associated protein (YAP65)|
          Length = 472

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 383 PWPPPGRRSPCARSTAGRPTAPPAP 457
           P P P   +P + S AG P APPAP
Sbjct: 9   PQPAPQGPAPPSVSPAGTPAAPPAP 33

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>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGA 379
           PG  G  G  G  G P +D  HGL+   G  GA
Sbjct: 91  PGRPGPPGMKGPSGSPGLDGLHGLKGQKGTKGA 123

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>GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)|
          Length = 1305

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 377  GAPWPPPGRRSPCARSTAGRPTAPPAPWSPRA 472
            GAP P     SP     A RPTAP   W+P+A
Sbjct: 1106 GAPAPTQKSNSPWQ---ANRPTAPGTSWTPQA 1134

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>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PGA GD G  G  G P  + A G + P G  G P
Sbjct: 1427 PGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMP 1460

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>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor|
          Length = 1691

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 477  PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            PGA+G  G  G  G P +    G+  P G  G P
Sbjct: 1112 PGAKGQPGLPGFPGTPGLPGPKGINGPPGNPGLP 1145

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>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D) (CP4)
          Length = 374

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHG 382
           PG +G+ G  G VG P +  + G + P G  G
Sbjct: 134 PGPKGEAGPKGEVGAPGMQGSAGAKGPAGPKG 165

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>KLF2_MOUSE (Q60843) Krueppel-like factor 2 (Lung krueppel-like factor)|
          Length = 354

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +2

Query: 395 PGRRSPCARSTAGRPTAPP--APWSPRAP 475
           PG    C R  AGRP  PP   P SP  P
Sbjct: 151 PGATGACMRGPAGRPPPPPDTPPLSPDGP 179

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>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3017

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = +3

Query: 168  CAR*LPSACWSTPRNRPRSR-----VMFWPSMSVRRMNPNHF--LMQRRRVGEDLVSPGV 326
            C   L  A W T R+ P +      +MF P++ VR +  NHF  ++Q +   E      +
Sbjct: 2814 CTTPLARAAWETARHTPVNSWLGNIIMFAPTIWVRMVLMNHFFSILQSQEQLEKAFDFDI 2873

Query: 327  LVLERALIDADLVLHVPEPHGLRRVAVVHARDPLQ 431
              +  ++   DL   +   HG+   + +H   P++
Sbjct: 2874 YGVTYSVSPLDLPAIIQRLHGMAAFS-LHGYSPVE 2907

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>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +2

Query: 380  APWPPPGRRSPCARSTA-----GRPTAPPAPWSPRAPGTSCWSA 496
            AP PPP   S  A STA      RP A PAP    A  T   +A
Sbjct: 919  APTPPPPPASAAAASTAPRAAESRPAAAPAPAEATATRTPLLTA 962

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>SYFB_THEFY (Q47N76) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 831

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 449 VVPWGGLQWIARMDYGDPAEAMGLRYVQYEIGVDESSLKDKYPRGHKIFTDPTSLHKKVV 270
           VV  G    +A +DY    E   LR V  E+  +  +LK   P      TDP  L ++V+
Sbjct: 414 VVRAGHAGRVAGVDYPVETEIARLRQVGCEVVQEGDTLKVTPPSWRPDLTDPNDLAEEVI 473

Query: 269 R 267
           R
Sbjct: 474 R 474

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>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 477 PGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
           PG  GD G  G+ G P  D A G   P G  G P
Sbjct: 159 PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPP 192

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>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 480  VPGARGDHGAGGAVGRPAVDRAHGLRRPGGGHGAP 376
            +PG +GD G  GA G P      G+R   G HG P
Sbjct: 1171 LPGGKGDDGWPGAPGLPGFPGLRGIR---GLHGLP 1202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,238,382
Number of Sequences: 219361
Number of extensions: 1290922
Number of successful extensions: 9595
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 4861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9396
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result