ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ333377.1| Triticum aestivum calcium-dependent protein kinase (CPK2A) mRNA, complete cds Length = 1942 Score = 184 bits (93), Expect = 9e-44 Identities = 114/120 (95%), Gaps = 2/120 (1%) Strand = Plus / Minus Query: 138 atgcagttcatcgcattgtgacctccat--ccagcgtctaagattcggttacaaccaaag 195 |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct: 1908 atgcagttcatcgcatcatcacctccatatccagcgtctaagattcggttacaaccaaag 1849 Query: 196 gagtgcgccatttcctccctctagctactgagtactactaggagactccatctatctccc 255 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1848 gagtgcgccattccctccctctagctactgagtactactaggagactccatctatctccc 1789
>gb|DQ333376.1| Triticum aestivum calcium-dependent protein kinase (CPK2B) mRNA, complete cds Length = 1939 Score = 184 bits (93), Expect = 9e-44 Identities = 114/120 (95%), Gaps = 2/120 (1%) Strand = Plus / Minus Query: 138 atgcagttcatcgcattgtgacctccat--ccagcgtctaagattcggttacaaccaaag 195 |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct: 1905 atgcagttcatcgcatcatcacctccatatccagcgtctaagattcggttacaaccaaag 1846 Query: 196 gagtgcgccatttcctccctctagctactgagtactactaggagactccatctatctccc 255 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 gagtgcgccattccctccctctagctactgagtactactaggagactccatctatctccc 1786
>gb|AC169122.1| Mus musculus BAC clone RP23-167K9 from chromosome 17, complete sequence Length = 127115 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 accacatgacatacacatgc 141 |||||||||||||||||||| Sbjct: 113242 accacatgacatacacatgc 113261 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 accacatgacatacacatgc 141 |||||||||||||||||||| Sbjct: 113086 accacatgacatacacatgc 113105
>gb|DQ496105.1| Homo sapiens progesterone receptor membrane component 2 (PGRMC2) gene, complete cds Length = 21648 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 aacagaagtgcagcaagttg 71 |||||||||||||||||||| Sbjct: 21399 aacagaagtgcagcaagttg 21418
>gb|AC096898.6| Homo sapiens BAC clone RP11-618K19 from 4, complete sequence Length = 160826 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aacagaagtgcagcaagttg 71 |||||||||||||||||||| Sbjct: 73315 aacagaagtgcagcaagttg 73296
>gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, complete sequence Length = 160146 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tcatctgaaaattctttaaa 32 |||||||||||||||||||| Sbjct: 76397 tcatctgaaaattctttaaa 76416
>gb|AC169676.2| Mus musculus BAC clone RP24-163P20 from chromosome 17, complete sequence Length = 150204 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 accacatgacatacacatgc 141 |||||||||||||||||||| Sbjct: 86513 accacatgacatacacatgc 86532 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 accacatgacatacacatgc 141 |||||||||||||||||||| Sbjct: 86357 accacatgacatacacatgc 86376
>dbj|AP005122.2| Homo sapiens genomic DNA, chromosome 11, clone:RP11-419F8, complete sequence Length = 170006 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tcatctgaaaattctttaaa 32 |||||||||||||||||||| Sbjct: 6966 tcatctgaaaattctttaaa 6947
>dbj|AP003784.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-654C20, complete sequence Length = 153539 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tcatctgaaaattctttaaa 32 |||||||||||||||||||| Sbjct: 151749 tcatctgaaaattctttaaa 151730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,408,276 Number of Sequences: 3902068 Number of extensions: 2408276 Number of successful extensions: 37935 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37919 Number of HSP's gapped (non-prelim): 14 length of query: 259 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 237 effective length of database: 17,147,199,772 effective search space: 4063886345964 effective search space used: 4063886345964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
