ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15NG4_PINTA (Q6J163) Auxin-induced protein 5NG4 44 2e-04
2TCFL5_HUMAN (Q9UL49) Transcription factor-like 5 protein (Cha tr... 32 1.2
3HIS3_NITWN (Q3ST00) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 32 1.2
4HIS3_BRAJA (Q89IW3) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 31 2.1
5NUDF_EMENI (Q00664) Nuclear migration protein nudF 30 2.8
6STCC_EMENI (Q00668) Putative sterigmatocystin biosynthesis perox... 30 3.6
7OTC_ARATH (O50039) Ornithine carbamoyltransferase, chloroplast p... 29 6.2
8HIS3_RHOPA (P60544) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 29 6.2
9VHT1_YEAST (P53241) Vitamin H transporter (H+/biotin symporter) 29 8.1
10STXB4_HUMAN (Q6ZWJ1) Syntaxin-binding protein 4 (Syntaxin 4-inte... 29 8.1

>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = -3

Query: 490 IISSFVLGETVSLGSIIAGVLLIGGLYNVLWGKSMERK 377
           I++S +LGE   LG I   +L+I GLY VLWGKS E++
Sbjct: 308 IMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKR 345



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>TCFL5_HUMAN (Q9UL49) Transcription factor-like 5 protein (Cha transcription|
           factor) (HPV-16 E2-binding protein 1) (E2BP-1)
          Length = 452

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 440 CWGATDWRPVQRTVGEKHG--EKRRYEQDGWRQTCHGAARQGAAPSAG*CGGKGLSQASD 267
           C G  D++ ++  +  + G  EK     DG R    GAA++GA  +A   G  G  +A  
Sbjct: 72  CLGHIDFQELRMMLLSEAGAAEKTSGGGDGARARADGAAKEGAGAAAAAAGPDGAPEARA 131

Query: 266 RPAM 255
           +PA+
Sbjct: 132 KPAV 135



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>HIS3_NITWN (Q3ST00) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 145

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 34  TTSTGEVWYYLKGNHALWLRAES 102
           T  TG+ WYY +   ALW + ES
Sbjct: 52  TVETGDAWYYSRSRKALWRKGES 74



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>HIS3_BRAJA (Q89IW3) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 140

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 34  TTSTGEVWYYLKGNHALWLRAES 102
           T +TGE WY+ +  +ALW + E+
Sbjct: 50  TIATGEAWYFSRSRNALWRKGET 72



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>NUDF_EMENI (Q00664) Nuclear migration protein nudF|
          Length = 444

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 165 LQFRVSRSACAAFQHSPEPVVWL*----TQSFLSHRRPITCLA--QTFAAASSGTWGCSL 326
           LQ  +  S  AA   + +P  WL     T +  SHR  +TC+A    F + +SG+  C++
Sbjct: 79  LQAELEASPSAARAKNQDPTNWLPKPSSTHTLTSHRDAVTCVAFHPVFTSLASGSEDCTI 138



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>STCC_EMENI (Q00668) Putative sterigmatocystin biosynthesis peroxidase stcC|
           precursor (EC 1.11.-.-)
          Length = 311

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 399 GGKAWREKTIRTRWVATNLPWSC-KTRSSPKCRMMR-RQRSEPSK*SAGDG 253
           GG A  ++++ +RW A +  W C   RSS  CR    R +S P     G G
Sbjct: 222 GGSAREKRSVGSRWPAMSFSWRCAPQRSSLACRSTSVRLQSRPLTRCHGSG 272



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>OTC_ARATH (O50039) Ornithine carbamoyltransferase, chloroplast precursor (EC|
           2.1.3.3) (OTCase) (Ornithine transcarbamylase)
          Length = 375

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +3

Query: 357 PILFVSSFLSMLFPHSTLYRPPISSTPAIILPRLTVS 467
           P L  SS  S  FP +TL R    S P+  LPRL VS
Sbjct: 15  PALSFSSSSSSFFPGTTLRRFSAVSLPSPALPRLRVS 51



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>HIS3_RHOPA (P60544) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 151

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 34  TTSTGEVWYYLKGNHALWLRAES 102
           T  TGE WYY +    LW + E+
Sbjct: 59  TIQTGEAWYYSRSRKRLWKKGET 81



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>VHT1_YEAST (P53241) Vitamin H transporter (H+/biotin symporter)|
          Length = 593

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 28  FDTTSTGEVWYYLKGNHALWLRAESRYSNGALPILSSWVACI 153
           FDT S   +  Y  G++ LWL++ ++YS   +  LS   AC+
Sbjct: 374 FDTCSWNNMTAY-SGSYTLWLKSNTKYSIAQVNNLSVIPACL 414



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>STXB4_HUMAN (Q6ZWJ1) Syntaxin-binding protein 4 (Syntaxin 4-interacting|
           protein) (Synip)
          Length = 553

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 321 SLSCSSMAGLSPPILFVSSFLSMLFPHSTLYRPPISSTPAIILPRLTVSPKTNEDMM 491
           +LSC+S+   S      +S LS+            SS P I++P+ + +PKTN D++
Sbjct: 117 NLSCTSLIEASGEYGPQASTLSLF-----------SSPPEILIPKTSSTPKTNNDIL 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,927,664
Number of Sequences: 219361
Number of extensions: 1515080
Number of successful extensions: 4528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4528
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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