ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57a08 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 180 bits (457), Expect = 1e-45 Identities = 86/89 (96%), Positives = 89/89 (100%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE+IKL Sbjct: 300 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKL 359 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA 151 KFIDTSSKFGHGRFQTT+EKQRF+GKLKA Sbjct: 360 KFIDTSSKFGHGRFQTTDEKQRFFGKLKA 388
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 157 bits (397), Expect = 1e-38 Identities = 73/87 (83%), Positives = 81/87 (93%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 E+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QTSRLALE+IKL Sbjct: 300 EYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKL 359 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKL 157 KFIDT+S FGHGRFQT+ EK RFY ++ Sbjct: 360 KFIDTASIFGHGRFQTSLEKMRFYNRV 386
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 155 bits (393), Expect = 3e-38 Identities = 71/86 (82%), Positives = 81/86 (94%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 E+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+E+IKL Sbjct: 300 EYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKL 359 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGK 160 KFID +S GHGRFQT++EK +FYG+ Sbjct: 360 KFIDAASNGGHGRFQTSQEKAKFYGR 385
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 134 bits (337), Expect = 9e-32 Identities = 62/88 (70%), Positives = 71/88 (80%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 E+D T+K ITPMGGFPHYG V D++MIKGCC+G KKR++TLR+SLLK T R ALE IKL Sbjct: 305 EYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDTSSK GHGRFQT +K F G LK Sbjct: 365 KFIDTSSKMGHGRFQTPADKLAFMGPLK 392
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 128 bits (321), Expect = 6e-30 Identities = 59/88 (67%), Positives = 71/88 (80%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D TEK + PMGGFPHYG+V D++MI+GCCVG KKR +TLR+SL+ QT R A E I L Sbjct: 302 DYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINL 361 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDTSSKFGHGRFQT EK+ F GKLK Sbjct: 362 KWIDTSSKFGHGRFQTHAEKRAFMGKLK 389
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 126 bits (317), Expect = 2e-29 Identities = 59/88 (67%), Positives = 72/88 (81%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFD T+K ITPMGGFP YG+V DY+M++G +GPKKR++TLR+SL+ QT R+A E I L Sbjct: 303 EFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINL 362 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDTSSK GHGRFQTT EK+ F GKLK Sbjct: 363 KWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 123 bits (309), Expect = 2e-28 Identities = 58/88 (65%), Positives = 71/88 (80%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFD T+K I PMGGFP YG+V DY+M++G +GPKKR++TLR+SL+ QT R+A E I L Sbjct: 303 EFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINL 362 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDTSSK GHGRFQTT EK+ F GKLK Sbjct: 363 KWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 123 bits (308), Expect = 2e-28 Identities = 57/87 (65%), Positives = 70/87 (80%) Frame = -3 Query: 414 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLK 235 +D T+K ITP+GGFPHYG V D++M+KGC G KKRV+TLR+SLL SR ALE+I+LK Sbjct: 306 YDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELK 365 Query: 234 FIDTSSKFGHGRFQTTEEKQRFYGKLK 154 FIDT+SKFGHGRFQT +EK+ F G K Sbjct: 366 FIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 122 bits (307), Expect = 3e-28 Identities = 58/88 (65%), Positives = 70/88 (79%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE I L Sbjct: 305 DYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDT+SKFGHGRFQT EEK+ F G LK Sbjct: 365 KFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 122 bits (307), Expect = 3e-28 Identities = 58/88 (65%), Positives = 70/88 (79%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE I L Sbjct: 305 DYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDT+SKFGHGRFQT EEK+ F G LK Sbjct: 365 KFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 122 bits (307), Expect = 3e-28 Identities = 58/88 (65%), Positives = 70/88 (79%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE I L Sbjct: 305 DYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDT+SKFGHGRFQT EEK+ F G LK Sbjct: 365 KFIDTTSKFGHGRFQTVEEKKAFMGPLK 392
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 122 bits (306), Expect = 3e-28 Identities = 58/88 (65%), Positives = 70/88 (79%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE I L Sbjct: 305 DYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDT+SKFGHGRFQT EEK+ F G LK Sbjct: 365 KFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 122 bits (306), Expect = 3e-28 Identities = 58/88 (65%), Positives = 70/88 (79%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 ++D ++K I P+GGF HYG V D++M+KGC VG KKRV+TLR+SLL QT R ALE I L Sbjct: 305 DYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDL 364 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 KFIDT+SKFGHGRFQT EEK+ F G LK Sbjct: 365 KFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 121 bits (303), Expect = 8e-28 Identities = 58/95 (61%), Positives = 75/95 (78%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFD TEK I+PMGGFPHYG V+ D++M+KG VG +KRVVTLR+SLL+Q A E++ + Sbjct: 291 EFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVI 347 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA*VATDL 133 KF+DTSSK GHGRFQT+ EK+ FYG KA +A ++ Sbjct: 348 KFVDTSSKIGHGRFQTSAEKKAFYGARKADIAAEI 382
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 121 bits (303), Expect = 8e-28 Identities = 56/89 (62%), Positives = 69/89 (77%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFD TEK I PMGGF HYG+VK ++LM+KGC GP+KR +TLR+S+ QT R ALE I L Sbjct: 304 EFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITL 363 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA 151 KFIDTSSKFGHG QT E+K +++G K+ Sbjct: 364 KFIDTSSKFGHGLHQTAEDKTKYFGVKKS 392
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 120 bits (302), Expect = 1e-27 Identities = 56/87 (64%), Positives = 69/87 (79%) Frame = -3 Query: 414 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLK 235 +D T K ITP+GGFPHYG V D++M+KGC G KKRV+TLR+SLL SR A+E+I+LK Sbjct: 306 YDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELK 365 Query: 234 FIDTSSKFGHGRFQTTEEKQRFYGKLK 154 FIDT+SKFGHGRFQT +EK+ F G K Sbjct: 366 FIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 120 bits (300), Expect = 2e-27 Identities = 56/87 (64%), Positives = 68/87 (78%) Frame = -3 Query: 414 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLK 235 FDRT+K ITPMGGF HYG +K D++M+KGC G +KR+VTLR+SL TSR ALE++ LK Sbjct: 297 FDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLK 356 Query: 234 FIDTSSKFGHGRFQTTEEKQRFYGKLK 154 +IDT+SKFG GRFQT EK F G LK Sbjct: 357 WIDTASKFGKGRFQTPAEKHAFMGTLK 383
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 117 bits (294), Expect = 8e-27 Identities = 57/88 (64%), Positives = 67/88 (76%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFDRT+K ITPMGGF HYG V D++M+KG G +KRVVTLR+SL TSR ALE++ L Sbjct: 298 EFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNL 357 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDT+SKFG GRFQT EK F G LK Sbjct: 358 KWIDTASKFGKGRFQTPAEKHAFMGTLK 385
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 117 bits (292), Expect = 1e-26 Identities = 58/92 (63%), Positives = 70/92 (76%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 +FD TEK ITPMGGF YGVV+ D++M+ G GP KRV+TLR+SLL TSR ALE + L Sbjct: 296 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 355 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA*VA 142 K+IDT+SKFGHGRFQT E ++F G LK VA Sbjct: 356 KWIDTASKFGHGRFQTPAEAKQFLGTLKKDVA 387
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 117 bits (292), Expect = 1e-26 Identities = 58/92 (63%), Positives = 70/92 (76%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 +FD TEK ITPMGGF YGVV+ D++M+ G GP KRV+TLR+SLL TSR ALE + L Sbjct: 296 DFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSL 355 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA*VA 142 K+IDT+SKFGHGRFQT E ++F G LK VA Sbjct: 356 KWIDTASKFGHGRFQTPAEAKQFLGTLKKDVA 387
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 115 bits (288), Expect = 4e-26 Identities = 57/93 (61%), Positives = 70/93 (75%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 +FD ++K ITPMGGF YG VK DY+M+KG G KKRV+TLR++L QTSR A E ++L Sbjct: 298 DFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVEL 357 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLKA*VAT 139 K+IDTSSKFGHG FQT EEK+ F G LK + T Sbjct: 358 KWIDTSSKFGHGAFQTPEEKRAFMGTLKKDLVT 390
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 115 bits (287), Expect = 5e-26 Identities = 55/88 (62%), Positives = 67/88 (76%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFDRT+K ITPMGGF HYG + D++++KG G +KRVVTLR+SL TSR ALE++ L Sbjct: 297 EFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTL 356 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDT+SKFG GRFQT EK F G LK Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 113 bits (282), Expect = 2e-25 Identities = 55/87 (63%), Positives = 66/87 (75%) Frame = -3 Query: 414 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLK 235 FDRT+K I PMGGF HYG+V D++M+KG G KKRVVTLR+SL TSR A+E++ LK Sbjct: 298 FDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLK 357 Query: 234 FIDTSSKFGHGRFQTTEEKQRFYGKLK 154 +IDT+SKFG GRFQT EK F G LK Sbjct: 358 WIDTASKFGKGRFQTPAEKHAFMGTLK 384
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 109 bits (272), Expect = 3e-24 Identities = 53/88 (60%), Positives = 65/88 (73%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 EFDRT+K I PMGGF YG VK D++++KG G KKR+VT+R+SL TSR A E++ L Sbjct: 297 EFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNL 356 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDT+SKFG GRFQT EK F G LK Sbjct: 357 KWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 107 bits (268), Expect = 9e-24 Identities = 52/88 (59%), Positives = 66/88 (75%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKL 238 E D T+K ITPMGGF YG + D++M+KG G KKRV+TLR+S+ TSR ALE ++L Sbjct: 298 EVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVEL 357 Query: 237 KFIDTSSKFGHGRFQTTEEKQRFYGKLK 154 K+IDTSS+FGHG FQT EK++F G LK Sbjct: 358 KWIDTSSEFGHGAFQTPAEKKQFQGTLK 385
>RL3_PYRHO (O59418) 50S ribosomal protein L3P| Length = 362 Score = 57.8 bits (138), Expect = 1e-08 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = -3 Query: 411 DRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKF 232 D E +ITP GGFPHYG+V+GD++MI G G KR++ +R ++ + ++ ++ + Sbjct: 296 DGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITY 355 Query: 231 IDTSSK 214 + SK Sbjct: 356 VSVESK 361
>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P| Length = 346 Score = 57.8 bits (138), Expect = 1e-08 Identities = 25/66 (37%), Positives = 41/66 (62%) Frame = -3 Query: 411 DRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKF 232 D E +ITP GGFPHYG+V+ D+LMI+G G KR++ +R ++ + +E ++ + Sbjct: 280 DGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITY 339 Query: 231 IDTSSK 214 + SK Sbjct: 340 VSRESK 345
>RL3_METJA (P54014) 50S ribosomal protein L3P| Length = 335 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/63 (41%), Positives = 43/63 (68%) Frame = -3 Query: 396 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSS 217 +ITP GGF HYGV++ +Y+++KG GP KR++ LR+++ Q + + +I +I T+S Sbjct: 274 EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTS 331 Query: 216 KFG 208 K G Sbjct: 332 KQG 334
>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P| Length = 365 Score = 56.6 bits (135), Expect = 2e-08 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = -3 Query: 411 DRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKF 232 + TE +ITP GGFPHYG+V+ D++MI G G KR++ +R ++ + ++ ++ + Sbjct: 299 ENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITY 358 Query: 231 IDTSSK 214 + SK Sbjct: 359 VSVESK 364
>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P| Length = 361 Score = 55.5 bits (132), Expect = 5e-08 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = -3 Query: 411 DRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKF 232 D E +ITP GGFPHYG+V+ D++MI G G KR++ +R ++ + ++ ++ + Sbjct: 295 DGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITY 354 Query: 231 IDTSSK 214 + SK Sbjct: 355 VSVESK 360
>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P| Length = 337 Score = 53.9 bits (128), Expect = 1e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = -3 Query: 399 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTS 220 +++TP GGF +YG+V+GDY++IKG GP KR++ LR + + + L + + +I Sbjct: 276 EEVTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRE 333 Query: 219 SKFG 208 SK G Sbjct: 334 SKQG 337
>RL3_METMA (Q8PV50) 50S ribosomal protein L3P| Length = 337 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/64 (39%), Positives = 41/64 (64%) Frame = -3 Query: 399 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTS 220 +++TP GGF +YG+V+GDY++IKG GP KR++ LR + + + L + + +I Sbjct: 276 EEVTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRE 333 Query: 219 SKFG 208 SK G Sbjct: 334 SKQG 337
>RL3_METTH (O26110) 50S ribosomal protein L3P| Length = 337 Score = 53.1 bits (126), Expect = 3e-07 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Frame = -3 Query: 411 DRTEKD-ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLK 235 D +E D + P GGF YG+V+ DY+MIKG GP KR+V LR+++ + + E ++ Sbjct: 270 DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQIN 327 Query: 234 FIDTSSKFG 208 +I T+SK G Sbjct: 328 YISTASKQG 336
>RL3_METKA (Q8TY90) 50S ribosomal protein L3P| Length = 361 Score = 53.1 bits (126), Expect = 3e-07 Identities = 21/40 (52%), Positives = 32/40 (80%) Frame = -3 Query: 399 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSL 280 +++TP GGF +YGVV+GDY+MI G GPKKR++ +R ++ Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318
>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P| Length = 338 Score = 52.4 bits (124), Expect = 4e-07 Identities = 22/36 (61%), Positives = 28/36 (77%) Frame = -3 Query: 396 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 289 +ITP GFPHYGVVKG Y++I+G G +KR+V LR Sbjct: 278 EITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
>RL3_ARCFU (O28354) 50S ribosomal protein L3P| Length = 331 Score = 51.6 bits (122), Expect = 7e-07 Identities = 21/64 (32%), Positives = 41/64 (64%) Frame = -3 Query: 399 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTS 220 ++ITP GGF HYGV++ Y+++ G GP KR++ +R ++ + + + + + ++ T+ Sbjct: 269 EEITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTT 326 Query: 219 SKFG 208 SK G Sbjct: 327 SKQG 330
>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P| Length = 334 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/64 (39%), Positives = 38/64 (59%) Frame = -3 Query: 396 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSS 217 +ITP GGF +YG VK Y+++KG GP KR+V LR ++ + L ++ +I S Sbjct: 273 EITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKES 330 Query: 216 KFGH 205 K G+ Sbjct: 331 KQGN 334
>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P| Length = 331 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = -3 Query: 393 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSK 214 I GGF HYG+VK DY+++ G GP KR++ +R ++ ++++KL +I SK Sbjct: 271 INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESK 328 Query: 213 FG 208 G Sbjct: 329 QG 330
>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P| Length = 334 Score = 47.4 bits (111), Expect = 1e-05 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Frame = -3 Query: 390 TPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEDIKLKFIDTSSK 214 TP GGFP+YG V G Y ++KG GP++R+V R ++ ++ RL D +++++ T+S Sbjct: 276 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASN 332 Query: 213 FG 208 G Sbjct: 333 QG 334
>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P| Length = 331 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/62 (37%), Positives = 36/62 (58%) Frame = -3 Query: 393 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSK 214 I GGF HYG VK DY+++ G G KR++ +R ++ +E++KL++I SK Sbjct: 271 INVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESK 328 Query: 213 FG 208 G Sbjct: 329 QG 330
>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P| Length = 351 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/38 (44%), Positives = 27/38 (71%) Frame = -3 Query: 399 KDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQ 286 K+I P GGF YG+V+ Y++++G +G KKR + LR+ Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327
>RL3_SULTO (Q975I1) 50S ribosomal protein L3P| Length = 343 Score = 43.1 bits (100), Expect = 3e-04 Identities = 18/36 (50%), Positives = 26/36 (72%) Frame = -3 Query: 396 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 289 +I P GGF +YG+V+ YL+I+G +G KKR + LR Sbjct: 283 EINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLR 318
>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P| Length = 342 Score = 39.7 bits (91), Expect = 0.003 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -3 Query: 396 DITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSS 217 +I P GG +YG+VK YL+I+G +G +KR + LR + S + K+ +++ +S Sbjct: 282 EINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLAS 339 Query: 216 KFG 208 + G Sbjct: 340 QQG 342
>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P| Length = 344 Score = 39.7 bits (91), Expect = 0.003 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = -3 Query: 393 ITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEDIKLKFIDTS 220 +TP GGF YGVV+ ++M+ G G KR + +R ++ + +L + ++ +I + Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339 Query: 219 SKFG 208 SK G Sbjct: 340 SKQG 343
>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)| Length = 337 Score = 37.7 bits (86), Expect = 0.011 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = -3 Query: 381 GGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSL 280 GGF +YG V G Y ++KG GP KR+V R ++ Sbjct: 282 GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315
>RL3_NANEQ (P60458) 50S ribosomal protein L3P| Length = 321 Score = 37.0 bits (84), Expect = 0.019 Identities = 19/56 (33%), Positives = 33/56 (58%) Frame = -3 Query: 381 GGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSK 214 GG+ YG V G +++KG GP+KR++ LR+++ + +E I ++I S K Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGI--EYISLSPK 320
>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)| Length = 130 Score = 34.3 bits (77), Expect = 0.12 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -3 Query: 417 EFDRTEKDITPMGGFPHYGVVKGDYLMI 334 ++D ++K I P+G F HYG V D++M+ Sbjct: 103 DYDLSDKSINPLGRFVHYGEVTNDFVML 130
>DPO3A_THEAQ (Q9XDH5) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1220 Score = 31.2 bits (69), Expect = 1.0 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 217 QVRTWPLPDNRREAEVLRQAQGLGCDRSYP-IVLPAFFSSSSNLCGRL 77 ++ +PLP+ R EA+ LR+ LG R YP + AF+ L G + Sbjct: 294 RIPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTM 341
>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3| Length = 266 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = -3 Query: 357 VKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFI 229 VK + L++KG GPKK V +++ K S+ A++ + L+ + Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224
>GRPE_SYNY3 (Q59978) Protein grpE (HSP-70 cofactor)| Length = 249 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = -3 Query: 312 KKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTEEKQRFYGKLKA*VATDL 133 +K + + RQ L +Q+ +L + IK +++ +++F + R +T EK+ +K T+L Sbjct: 76 QKDLASHRQELAEQSEQL--DSIKKRYVALAAEFDNFRKRTQREKEEQAKLIKGRTITEL 133 Query: 132 IP 127 +P Sbjct: 134 LP 135
>YHES_ECOLI (P63389) Hypothetical ABC transporter ATP-binding protein yheS| Length = 637 Score = 30.0 bits (66), Expect = 2.3 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Frame = -3 Query: 357 VKGDYLMIKGCCVG--PKKRVVTLR--QSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQT 190 V G+ + KG +G + ++ LR +S ++ +RLA ++++ K D FG + Sbjct: 365 VSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKV 424 Query: 189 TEEKQRFYGKLKA*VATDLI 130 TEE +RF G KA + LI Sbjct: 425 TEETRRFSGGEKARLVLALI 444
>YHES_ECO57 (P63390) Hypothetical ABC transporter ATP-binding protein yheS| Length = 637 Score = 30.0 bits (66), Expect = 2.3 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Frame = -3 Query: 357 VKGDYLMIKGCCVG--PKKRVVTLR--QSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQT 190 V G+ + KG +G + ++ LR +S ++ +RLA ++++ K D FG + Sbjct: 365 VSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDKV 424 Query: 189 TEEKQRFYGKLKA*VATDLI 130 TEE +RF G KA + LI Sbjct: 425 TEETRRFSGGEKARLVLALI 444
>TYRB_PARDE (P95468) Aromatic-amino-acid aminotransferase (EC 2.6.1.57) (AROAT)| (ARAT) Length = 394 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = -3 Query: 354 KGDYLMIKGCCVGPKKRVVTLRQ-----SLLKQTSRLALEDI 244 KGD +++ GCC P +TL Q S+L++T L L D+ Sbjct: 168 KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL 209
>ULP1_YEAST (Q02724) Ubiquitin-like-specific protease 1 (EC 3.4.22.-)| Length = 621 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -2 Query: 247 YQAQVHRHLIQVRTWPLPDNRREAEVLRQAQGLGCDRSYPI 125 Y + +H TW LP+ RR E ++G+G + PI Sbjct: 149 YSSDTRKHKFDTSTWALPNKRRRIE----SEGVGTPSTSPI 185
>COX4_COREF (Q8FNQ8) Cytochrome c oxidase polypeptide 4 (EC 1.9.3.1)| (Cytochrome c oxidase polypeptide IV) (Cytochrome aa3 subunit 4) Length = 143 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/60 (38%), Positives = 31/60 (51%) Frame = -2 Query: 235 VHRHLIQVRTWPLPDNRREAEVLRQAQGLGCDRSYPIVLPAFFSSSSNLCGRLIGYRFMH 56 V+ H+ + RT LP++ EAEV +A LG S + PA S + L G G FMH Sbjct: 58 VYIHITERRTDVLPEDWEEAEVADKAGTLGF-FSPGSIWPAAMSGAVGLLG--FGIIFMH 114
>CLS_SALTY (P63798) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)| (CL synthase) Length = 486 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 209 DMAASRQPKRSRGSTASSRLRLRQILSHSVTSLFFFFFQPL 87 D+AA + SR +RL +++ L +T F+FF PL Sbjct: 445 DLAAVQDDYISRSRLLDARLWVKRPLWQRITERLFYFFSPL 485
>CLS_SALTI (P63799) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)| (CL synthase) Length = 486 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -1 Query: 209 DMAASRQPKRSRGSTASSRLRLRQILSHSVTSLFFFFFQPL 87 D+AA + SR +RL +++ L +T F+FF PL Sbjct: 445 DLAAVQDDYISRSRLLDARLWVKRPLWQRITERLFYFFSPL 485
>TILS_BORPE (Q7VX92) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 321 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 244 QAQVHRHLIQVRTWPLPDNRREAEV---LRQAQGLGCDR 137 QAQ RH + + P+P R AE+ LRQ LG DR Sbjct: 261 QAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDR 299
>TILS_BORPA (Q7W859) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 344 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 244 QAQVHRHLIQVRTWPLPDNRREAEV---LRQAQGLGCDR 137 QAQ RH + + P+P R AE+ LRQ LG DR Sbjct: 284 QAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDR 322
>TILS_BORBR (Q7WLK7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 344 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -2 Query: 244 QAQVHRHLIQVRTWPLPDNRREAEV---LRQAQGLGCDR 137 QAQ RH + + P+P R AE+ LRQ LG DR Sbjct: 284 QAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDR 322
>TRUA1_CLOTE (Q893H3) tRNA pseudouridine synthase A 1 (EC 5.4.99.12)| (tRNA-uridine isomerase I 1) (tRNA pseudouridylate synthase I 1) Length = 245 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +1 Query: 85 HKGWKKKKKRLVTLWDKI 138 +KGW+K+KK ++T+ DKI Sbjct: 15 YKGWQKQKKDVLTIQDKI 32 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,913,941 Number of Sequences: 219361 Number of extensions: 919344 Number of successful extensions: 2650 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 2612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2646 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
