ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1 33 0.53
2CKLF_MOUSE (Q9DAS1) Chemokine-like factor 29 5.9
3YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein ... 29 7.7

>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +3

Query: 78  QGKKDLCRTLQPDV--YTR*KLSKELTFPPLKNK*KDCRCVVHTIASRRGPTILTAARLR 251
           Q K++L R L  ++   ++ KL  ++T   L+    D   +   +   R       A + 
Sbjct: 408 QEKENLRRMLDAELENISKLKLEVQVTQETLEKSRSDASDIAQQLQQSRHLCSKLEAEVS 467

Query: 252 AYSMEIEKPKISYFRKVDDTKRNA*ATHAVLTS 350
              ME+E+ + S  R +D+TKR A    A LT+
Sbjct: 468 KLQMELEETRTSLRRNIDETKRGAELLAAELTT 500



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>CKLF_MOUSE (Q9DAS1) Chemokine-like factor|
          Length = 152

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -3

Query: 175 YLFFRGGNVSSLLSFYLVYTSGCNVRHRSFLPWPL----NSLVPPHVGILIAVL 26
           Y+   G  V+ +  F ++YT G +   RSF  WPL    NS+V     ++++VL
Sbjct: 45  YIVITGFEVTVIFCFLVLYTCGLDKIMRSFF-WPLLDVINSMVTALCMLIVSVL 97



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>YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein 1 (Y-box|
           binding protein 1) (Y-box transcription factor)
          Length = 303

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 QVPWTRQYRRNYRYHQECGKKPGSKEGAE 436
           Q P  R+YRRN+ Y +   + P S++G E
Sbjct: 253 QPPPQRRYRRNFNYRRRRPENPKSQDGKE 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,145,727
Number of Sequences: 219361
Number of extensions: 1456489
Number of successful extensions: 3402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3402
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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