Clone Information

BLAST Search Result

Clone Name	rbart57a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK071625.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
2	dbj\|AK058212.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	266	6e-68
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	228	1e-56
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	228	1e-56
5	gb\|AC134234.3\| Oryza sativa (japonica cultivar-group) chromosome...	228	1e-56
6	emb\|Z69731.1\|SPAC6C3 S.pombe chromosome I cosmid c6C3	44	0.42
7	ref\|NM_001019154.1\| Schizosaccharomyces pombe 972h- hypothetical...	44	0.42
8	emb\|BX822760.1\|CNS0A5XU Arabidopsis thaliana Full-length cDNA Co...	44	0.42
9	dbj\|AB015474.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	44	0.42
10	gb\|AC145855.2\| Pan troglodytes BAC clone RP43-5O24 from 7, compl...	42	1.7
11	gb\|AC009331.6\| Homo sapiens chromosome 7 clone RP11-371N6, compl...	42	1.7
12	gb\|AC011891.3\|AC011891 Homo sapiens clone CTD-2320J21, complete ...	42	1.7
13	gb\|AC156459.2\| Mus musculus BAC clone RP23-269A9 from chromosome...	42	1.7
14	gb\|AC083871.2\|AC083871 Homo sapiens chromosome 7 clone RP11-140I...	42	1.7
15	gb\|AC154219.1\| Mus musculus BAC clone RP24-362C22 from 13, compl...	42	1.7
16	emb\|Z32683.1\|CER07E5 Caenorhabditis elegans Cosmid R07E5, comple...	42	1.7
17	gb\|CP000013.1\| Borrelia garinii PBi, complete genome	40	6.6
18	ref\|XM_521450.1\| PREDICTED: Pan troglodytes similar to Zinc fing...	40	6.6
19	gb\|AE014842.1\| Plasmodium falciparum 3D7 chromosome 11 section 7...	40	6.6
20	gb\|AC147921.2\| Xenopus tropicalis clone CH216-95N3, complete seq...	40	6.6
21	gb\|AC158549.8\| Mus musculus chromosome 19, clone RP24-216K4, com...	40	6.6
22	gb\|AC116523.7\| Mus musculus chromosome 9, clone RP24-349L11, com...	40	6.6
23	gb\|AC127547.2\| Mus musculus BAC clone RP24-498C13 from chromosom...	40	6.6
24	emb\|AL365202.19\| Human DNA sequence from clone RP11-326A8 on chr...	40	6.6
25	emb\|AL359175.10\| Human DNA sequence from clone RP11-213K14 on ch...	40	6.6
26	gb\|AC129886.3\| Atelerix albiventris clone LB4-234A16, complete s...	40	6.6
27	gb\|AC105162.11\| Mus musculus chromosome 1, clone RP24-92O11, com...	40	6.6
28	emb\|CR936807.1\| Homo sapiens mRNA; cDNA DKFZp781K2462 (from clon...	40	6.6
29	emb\|AL080210.1\|HSM800736 Homo sapiens genomic DNA; cDNA DKFZp586...	40	6.6
30	gb\|AC108784.12\| Mus musculus chromosome 8, clone RP24-181O5, com...	40	6.6
31	emb\|CR859409.1\| Pongo pygmaeus mRNA; cDNA DKFZp469K176 (from clo...	40	6.6
32	gb\|AC163900.3\| Mus musculus BAC clone RP23-151K15 from chromosom...	40	6.6
33	dbj\|AK023617.1\| Homo sapiens cDNA FLJ13555 fis, clone PLACE1007677	40	6.6
34	gb\|AC098974.2\| Homo sapiens chromosome 3 clone RP11-320M6, compl...	40	6.6
35	gb\|AC025946.9\| Homo sapiens chromosome 10 clone RP11-543F8, comp...	40	6.6
36	ref\|NM_006873.2\| Homo sapiens stonin 1 (STON1), mRNA	40	6.6
37	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	40	6.6
38	gb\|AC005089.3\| Homo sapiens BAC clone CTA-315H11 from 7, complet...	40	6.6
39	gb\|AC149879.2\| Xenopus tropicalis clone CH216-40M16, complete se...	40	6.6
40	gb\|AC148710.1\| Macaca mulatta Major Histocompatibility Complex B...	40	6.6
41	gb\|AC148705.1\| Macaca mulatta Major Histocompatibility Complex M...	40	6.6
42	gb\|AC017087.5\|AC017087 Homo sapiens BAC clone RP11-495H13 from 4...	40	6.6
43	gb\|AC068294.26\|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell ...	40	6.6
44	dbj\|AB128049.1\| Macaca mulatta genes, MHC class I region, partia...	40	6.6
45	gb\|AC159712.7\| Mus musculus BAC RP23-236J3 (Roswell Park Cancer...	40	6.6
46	gb\|AC154807.2\| Mus musculus BAC clone RP23-79E7 from chromosome ...	40	6.6
47	gb\|AC073082.6\| Homo sapiens BAC clone RP11-310N16 from 2, comple...	40	6.6
48	gb\|AC125041.2\| Mus musculus BAC clone RP23-337J19 from chromosom...	40	6.6
49	gb\|AF097485.1\|AF097485 Homo sapiens transducin beta-like 2 (TBL2...	40	6.6
50	gb\|AE014299.1\| Shewanella oneidensis MR-1, complete genome	40	6.6
51	gb\|AC006287.1\|AC006287 Homo sapiens, clone hRPK.22_A_1, complete...	40	6.6
52	gb\|AC118614.12\| Mus musculus chromosome 18, clone RP23-477B20, c...	40	6.6
53	dbj\|AP000919.6\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	6.6
54	gb\|AC154277.1\| Mus musculus BAC clone RP24-266G7 from 9, complet...	40	6.6
55	emb\|AL935285.6\| Zebrafish DNA sequence from clone DKEY-37A1, com...	40	6.6
56	dbj\|AP005431.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	6.6
57	emb\|AL833780.6\| Mouse DNA sequence from clone RP23-24M22 on chro...	40	6.6

>dbj|AK071625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106F16, full
            insert sequence
          Length = 1427

 Score =  266 bits (134), Expect = 6e-68
 Identities = 191/210 (90%)
 Strand = Plus / Minus

                                                                        
Query: 280  agatttcctacttcaggaaggttgatgatacaaaaaggaatgcgtaagcaacacacgcag 339
            |||||||||||||||||||||  |||||||||||||||| ||| |||| |||||| ||||
Sbjct: 1004 agatttcctacttcaggaaggccgatgatacaaaaaggagtgcataagtaacacatgcag 945

                                                                        
Query: 340  tgctcacttccaagttccttggaccaggcagtataggcggaattaccgataccatcaaga 399
            |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 944  tgctcacttccaagtttcttggaccaggcagtataggcggaattacagaaaccatcaaga 885

                                                                        
Query: 400  atgtggcaagaaaccaggaagcaaagaaggagccgaacccgtaaaagaatgatttccatc 459
            |||||||||| |||||||||||||||||||| |||||||| |||||||||| |  |||||
Sbjct: 884  atgtggcaaggaaccaggaagcaaagaaggatccgaacccataaaagaatgttcgccatc 825

                                          
Query: 460  cacttttaagtcgctgataaaggaaataga 489
            ||||||| || | |||||||| ||||||||
Sbjct: 824  cacttttcagcctctgataaatgaaataga 795



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   tcaagggccagggcaaaaaa 89
            ||||||||||||||||||||
Sbjct: 1206 tcaagggccagggcaaaaaa 1187

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>dbj|AK058212.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C10, full
            insert sequence
          Length = 1351

 Score =  266 bits (134), Expect = 6e-68
 Identities = 191/210 (90%)
 Strand = Plus / Minus

                                                                        
Query: 280  agatttcctacttcaggaaggttgatgatacaaaaaggaatgcgtaagcaacacacgcag 339
            |||||||||||||||||||||  |||||||||||||||| ||| |||| |||||| ||||
Sbjct: 1059 agatttcctacttcaggaaggccgatgatacaaaaaggagtgcataagtaacacatgcag 1000

                                                                        
Query: 340  tgctcacttccaagttccttggaccaggcagtataggcggaattaccgataccatcaaga 399
            |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 999  tgctcacttccaagtttcttggaccaggcagtataggcggaattacagaaaccatcaaga 940

                                                                        
Query: 400  atgtggcaagaaaccaggaagcaaagaaggagccgaacccgtaaaagaatgatttccatc 459
            |||||||||| |||||||||||||||||||| |||||||| |||||||||| |  |||||
Sbjct: 939  atgtggcaaggaaccaggaagcaaagaaggatccgaacccataaaagaatgttcgccatc 880

                                          
Query: 460  cacttttaagtcgctgataaaggaaataga 489
            ||||||| || | |||||||| ||||||||
Sbjct: 879  cacttttcagcctctgataaatgaaataga 850



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   tcaagggccagggcaaaaaa 89
            ||||||||||||||||||||
Sbjct: 1261 tcaagggccagggcaaaaaa 1242

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  228 bits (115), Expect = 1e-56
 Identities = 148/159 (93%)
 Strand = Plus / Plus

                                                                           
Query: 280     agatttcctacttcaggaaggttgatgatacaaaaaggaatgcgtaagcaacacacgcag 339
               |||||||||||||||||||||  |||||||||||||||| ||| |||| |||||| ||||
Sbjct: 8178941 agatttcctacttcaggaaggccgatgatacaaaaaggagtgcataagtaacacatgcag 8179000

                                                                           
Query: 340     tgctcacttccaagttccttggaccaggcagtataggcggaattaccgataccatcaaga 399
               |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 8179001 tgctcacttccaagtttcttggaccaggcagtataggcggaattacagaaaccatcaaga 8179060

                                                      
Query: 400     atgtggcaagaaaccaggaagcaaagaaggagccgaacc 438
               |||||||||| |||||||||||||||||||| |||||||
Sbjct: 8179061 atgtggcaaggaaccaggaagcaaagaaggatccgaacc 8179099



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 436     acccgtaaaagaatgatttccatccacttttaagtcgctgataaaggaaataga 489
               |||| |||||||||| |  |||||||||||| || | |||||||| ||||||||
Sbjct: 8180966 acccataaaagaatgttcgccatccacttttcagcctctgataaatgaaataga 8181019



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      tcaagggccagggcaaaaaa 89
               ||||||||||||||||||||
Sbjct: 8178739 tcaagggccagggcaaaaaa 8178758

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  228 bits (115), Expect = 1e-56
 Identities = 148/159 (93%)
 Strand = Plus / Plus

                                                                           
Query: 280     agatttcctacttcaggaaggttgatgatacaaaaaggaatgcgtaagcaacacacgcag 339
               |||||||||||||||||||||  |||||||||||||||| ||| |||| |||||| ||||
Sbjct: 8176776 agatttcctacttcaggaaggccgatgatacaaaaaggagtgcataagtaacacatgcag 8176835

                                                                           
Query: 340     tgctcacttccaagttccttggaccaggcagtataggcggaattaccgataccatcaaga 399
               |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 8176836 tgctcacttccaagtttcttggaccaggcagtataggcggaattacagaaaccatcaaga 8176895

                                                      
Query: 400     atgtggcaagaaaccaggaagcaaagaaggagccgaacc 438
               |||||||||| |||||||||||||||||||| |||||||
Sbjct: 8176896 atgtggcaaggaaccaggaagcaaagaaggatccgaacc 8176934



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 436     acccgtaaaagaatgatttccatccacttttaagtcgctgataaaggaaataga 489
               |||| |||||||||| |  |||||||||||| || | |||||||| ||||||||
Sbjct: 8178801 acccataaaagaatgttcgccatccacttttcagcctctgataaatgaaataga 8178854



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      tcaagggccagggcaaaaaa 89
               ||||||||||||||||||||
Sbjct: 8176574 tcaagggccagggcaaaaaa 8176593

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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12,
              complete sequence
          Length = 195583

 Score =  228 bits (115), Expect = 1e-56
 Identities = 148/159 (93%)
 Strand = Plus / Plus

                                                                          
Query: 280    agatttcctacttcaggaaggttgatgatacaaaaaggaatgcgtaagcaacacacgcag 339
              |||||||||||||||||||||  |||||||||||||||| ||| |||| |||||| ||||
Sbjct: 110371 agatttcctacttcaggaaggccgatgatacaaaaaggagtgcataagtaacacatgcag 110430

                                                                          
Query: 340    tgctcacttccaagttccttggaccaggcagtataggcggaattaccgataccatcaaga 399
              |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 110431 tgctcacttccaagtttcttggaccaggcagtataggcggaattacagaaaccatcaaga 110490

                                                     
Query: 400    atgtggcaagaaaccaggaagcaaagaaggagccgaacc 438
              |||||||||| |||||||||||||||||||| |||||||
Sbjct: 110491 atgtggcaaggaaccaggaagcaaagaaggatccgaacc 110529



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 436    acccgtaaaagaatgatttccatccacttttaagtcgctgataaaggaaataga 489
              |||| |||||||||| |  |||||||||||| || | |||||||| ||||||||
Sbjct: 112396 acccataaaagaatgttcgccatccacttttcagcctctgataaatgaaataga 112449



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     tcaagggccagggcaaaaaa 89
              ||||||||||||||||||||
Sbjct: 110169 tcaagggccagggcaaaaaa 110188

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>emb|Z69731.1|SPAC6C3 S.pombe chromosome I cosmid c6C3
          Length = 24643

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   atagaaactcagcaaagaacta 149
             ||||||||||||||||||||||
Sbjct: 22039 atagaaactcagcaaagaacta 22018

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>ref|NM_001019154.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6C3.09),
           partial mRNA
          Length = 1008

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 128 atagaaactcagcaaagaacta 149
           ||||||||||||||||||||||
Sbjct: 963 atagaaactcagcaaagaacta 942

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>emb|BX822760.1|CNS0A5XU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZD04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1371

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 158 acccctgaaaaataaataaaaa 179
           ||||||||||||||||||||||
Sbjct: 627 acccctgaaaaataaataaaaa 606

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>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24
          Length = 87487

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   acccctgaaaaataaataaaaa 179
             ||||||||||||||||||||||
Sbjct: 85646 acccctgaaaaataaataaaaa 85625

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>gb|AC145855.2| Pan troglodytes BAC clone RP43-5O24 from 7, complete sequence
          Length = 178643

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 110    acctgatgtatatactagata 130
              |||||||||||||||||||||
Sbjct: 139429 acctgatgtatatactagata 139409

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>gb|AC009331.6| Homo sapiens chromosome 7 clone RP11-371N6, complete sequence
          Length = 158298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   acctgatgtatatactagata 130
             |||||||||||||||||||||
Sbjct: 38273 acctgatgtatatactagata 38293

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>gb|AC011891.3|AC011891 Homo sapiens clone CTD-2320J21, complete sequence
          Length = 73481

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 268   ttgaaaaaccaaagatttcct 288
             |||||||||||||||||||||
Sbjct: 45697 ttgaaaaaccaaagatttcct 45677

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>gb|AC156459.2| Mus musculus BAC clone RP23-269A9 from chromosome 13, complete sequence
          Length = 188142

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 124   ctagatagaaactcagcaaagaact 148
             ||||| |||||||||||||||||||
Sbjct: 22644 ctagacagaaactcagcaaagaact 22620

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>gb|AC083871.2|AC083871 Homo sapiens chromosome 7 clone RP11-140I14, complete sequence
          Length = 150864

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 110   acctgatgtatatactagata 130
             |||||||||||||||||||||
Sbjct: 64598 acctgatgtatatactagata 64578

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>gb|AC154219.1| Mus musculus BAC clone RP24-362C22 from 13, complete sequence
          Length = 175346

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 124   ctagatagaaactcagcaaagaact 148
             ||||| |||||||||||||||||||
Sbjct: 57384 ctagacagaaactcagcaaagaact 57408

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>emb|Z32683.1|CER07E5 Caenorhabditis elegans Cosmid R07E5, complete sequence
          Length = 32266

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 cccctgaaaaataaataaaaa 179
           |||||||||||||||||||||
Sbjct: 784 cccctgaaaaataaataaaaa 804

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>gb|CP000013.1| Borrelia garinii PBi, complete genome
          Length = 904246

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    aaaaaggaatgcgtaagcaa 330
              ||||||||||||||||||||
Sbjct: 684162 aaaaaggaatgcgtaagcaa 684143

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>ref|XM_521450.1| PREDICTED: Pan troglodytes similar to Zinc finger protein 85 (Zinc
            finger protein HPF4) (HTF1) (LOC466048), mRNA
          Length = 1722

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  aagaatgtggcaagaaacca 415
            ||||||||||||||||||||
Sbjct: 1502 aagaatgtggcaagaaacca 1521

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>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ttgatgatacaaaaaggaat 320
             ||||||||||||||||||||
Sbjct: 21736 ttgatgatacaaaaaggaat 21717

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>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence
          Length = 133860

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    tgatttccatccacttttaa 468
              ||||||||||||||||||||
Sbjct: 120538 tgatttccatccacttttaa 120557

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>gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, complete sequence
          Length = 195500

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   aaataaataaaaagactgtc 186
             ||||||||||||||||||||
Sbjct: 72045 aaataaataaaaagactgtc 72026

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>gb|AC116523.7| Mus musculus chromosome 9, clone RP24-349L11, complete sequence
          Length = 184012

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ctgaaaaataaataaaaaga 181
              ||||||||||||||||||||
Sbjct: 145488 ctgaaaaataaataaaaaga 145469

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>gb|AC127547.2| Mus musculus BAC clone RP24-498C13 from chromosome 8, complete sequence
          Length = 151070

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ctgaaaaataaataaaaaga 181
              ||||||||||||||||||||
Sbjct: 139477 ctgaaaaataaataaaaaga 139458

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>emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chromosome 9 Contains the 5'
              end of the RFX3 gene for regulatory factor X, 3 (influences
              HLA class II expression), the 5' end of a novel gene and a
              CpG island, complete sequence
          Length = 177164

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    aaaaataaataaaaagactg 184
              ||||||||||||||||||||
Sbjct: 113837 aaaaataaataaaaagactg 113856

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>emb|AL359175.10| Human DNA sequence from clone RP11-213K14 on chromosome 10 Contains part
              of a variant of the NEBL gene for the nebulette protein
              (actin-binding Z-disc protein) and an eukaryotic
              translation initiation factor 4B (EIF4B)(EIF-4B)
              pseudogene, complete sequence
          Length = 155290

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    aaataaataaaaagactgtc 186
              ||||||||||||||||||||
Sbjct: 149022 aaataaataaaaagactgtc 149041

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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cccctgaaaaataaataaaa 178
              ||||||||||||||||||||
Sbjct: 126576 cccctgaaaaataaataaaa 126557

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>gb|AC105162.11| Mus musculus chromosome 1, clone RP24-92O11, complete sequence
          Length = 177420

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    gtatatactagatagaaactcagc 140
              |||||||| |||||||||||||||
Sbjct: 110470 gtatatacaagatagaaactcagc 110447

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>emb|CR936807.1| Homo sapiens mRNA; cDNA DKFZp781K2462 (from clone DKFZp781K2462)
          Length = 5620

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  ttacaacctgatgtatatactaga 128
            ||||||||||||||||||| ||||
Sbjct: 5356 ttacaacctgatgtatatattaga 5379

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>emb|AL080210.1|HSM800736 Homo sapiens genomic DNA; cDNA DKFZp586G0623 (from clone
           DKFZp586G0623)
          Length = 1400

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 ttacaacctgatgtatatactaga 128
           ||||||||||||||||||| ||||
Sbjct: 749 ttacaacctgatgtatatattaga 772

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>gb|AC108784.12| Mus musculus chromosome 8, clone RP24-181O5, complete sequence
          Length = 160801

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ctgaaaaataaataaaaaga 181
             ||||||||||||||||||||
Sbjct: 93722 ctgaaaaataaataaaaaga 93741

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>emb|CR859409.1| Pongo pygmaeus mRNA; cDNA DKFZp469K176 (from clone DKFZp469K176)
          Length = 5526

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  ttacaacctgatgtatatactaga 128
            ||||||||||||||||||| ||||
Sbjct: 5249 ttacaacctgatgtatatattaga 5272

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>gb|AC163900.3| Mus musculus BAC clone RP23-151K15 from chromosome 12, complete sequence
          Length = 200606

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    aaaataaataaaaagactgt 185
              ||||||||||||||||||||
Sbjct: 155603 aaaataaataaaaagactgt 155622

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>dbj|AK023617.1| Homo sapiens cDNA FLJ13555 fis, clone PLACE1007677
          Length = 2382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  ttacaacctgatgtatatactaga 128
            ||||||||||||||||||| ||||
Sbjct: 2125 ttacaacctgatgtatatattaga 2148

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>gb|AC098974.2| Homo sapiens chromosome 3 clone RP11-320M6, complete sequence
          Length = 185761

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gaaaaataaataaaaagact 183
             ||||||||||||||||||||
Sbjct: 57495 gaaaaataaataaaaagact 57476

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>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   aaaaataaataaaaagactg 184
             ||||||||||||||||||||
Sbjct: 35085 aaaaataaataaaaagactg 35104

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>ref|NM_006873.2| Homo sapiens stonin 1 (STON1), mRNA
          Length = 5822

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 105  ttacaacctgatgtatatactaga 128
            ||||||||||||||||||| ||||
Sbjct: 5171 ttacaacctgatgtatatattaga 5194

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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    cccctgaaaaataaataaaa 178
              ||||||||||||||||||||
Sbjct: 735848 cccctgaaaaataaataaaa 735829

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>gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complete sequence
          Length = 177893

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ctgaaaaataaataaaaaga 181
             ||||||||||||||||||||
Sbjct: 68368 ctgaaaaataaataaaaaga 68349

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>gb|AC149879.2| Xenopus tropicalis clone CH216-40M16, complete sequence
          Length = 177897

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tgatttccatccacttttaa 468
             ||||||||||||||||||||
Sbjct: 31799 tgatttccatccacttttaa 31818

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>gb|AC148710.1| Macaca mulatta Major Histocompatibility Complex BAC MMU399F22, complete
             sequence
          Length = 158818

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   caagcaggaggggacccacc 227
             ||||||||||||||||||||
Sbjct: 31647 caagcaggaggggacccacc 31628

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>gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex MMU348N13, complete
             sequence
          Length = 186491

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   caagcaggaggggacccacc 227
             ||||||||||||||||||||
Sbjct: 27763 caagcaggaggggacccacc 27744

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>gb|AC017087.5|AC017087 Homo sapiens BAC clone RP11-495H13 from 4, complete sequence
          Length = 171745

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    atggaaattgaaaaaccaaa 280
              ||||||||||||||||||||
Sbjct: 149247 atggaaattgaaaaaccaaa 149228

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>gb|AC068294.26|AC068294 Mus musculus 3 BAC RP23-418O21 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 201750

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    aagaaaccaggaagcaaaga 426
              ||||||||||||||||||||
Sbjct: 116678 aagaaaccaggaagcaaaga 116697

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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     caagcaggaggggacccacc 227
               ||||||||||||||||||||
Sbjct: 1696059 caagcaggaggggacccacc 1696078

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>gb|AC159712.7| Mus musculus  BAC RP23-236J3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 221910

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   ttatagcatggaaattgaaaaaccaaag 281
             |||||||||||||| ||||| |||||||
Sbjct: 91936 ttatagcatggaaaatgaaacaccaaag 91963

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>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence
          Length = 256130

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   tagatagaaactcagcaaagaact 148
             |||| |||||||||||||||||||
Sbjct: 56831 tagagagaaactcagcaaagaact 56808

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>gb|AC073082.6| Homo sapiens BAC clone RP11-310N16 from 2, complete sequence
          Length = 177047

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    ttacaacctgatgtatatactaga 128
              ||||||||||||||||||| ||||
Sbjct: 106243 ttacaacctgatgtatatattaga 106220

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>gb|AC125041.2| Mus musculus BAC clone RP23-337J19 from chromosome 12, complete
             sequence
          Length = 202288

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   aaaataaataaaaagactgt 185
             ||||||||||||||||||||
Sbjct: 32754 aaaataaataaaaagactgt 32773

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>gb|AF097485.1|AF097485 Homo sapiens transducin beta-like 2 (TBL2) gene, complete cds
          Length = 8903

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  ctgaaaaataaataaaaaga 181
            ||||||||||||||||||||
Sbjct: 1003 ctgaaaaataaataaaaaga 984

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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 453     ttccatccacttttaagtcg 472
               ||||||||||||||||||||
Sbjct: 2212380 ttccatccacttttaagtcg 2212399

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>gb|AC006287.1|AC006287 Homo sapiens, clone hRPK.22_A_1, complete sequence
          Length = 176153

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaataaataaaaagactgt 185
              ||||||||||||||||||||
Sbjct: 174123 aaaataaataaaaagactgt 174104

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>gb|AC118614.12| Mus musculus chromosome 18, clone RP23-477B20, complete sequence
          Length = 159912

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    aaaaataaataaaaagactg 184
              ||||||||||||||||||||
Sbjct: 100942 aaaaataaataaaaagactg 100961

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>dbj|AP000919.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-737O24, complete
              sequence
          Length = 184440

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    tgatgatacaaaaaggaatg 321
              ||||||||||||||||||||
Sbjct: 133386 tgatgatacaaaaaggaatg 133367

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>gb|AC154277.1| Mus musculus BAC clone RP24-266G7 from 9, complete sequence
          Length = 168300

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ctgaaaaataaataaaaaga 181
             ||||||||||||||||||||
Sbjct: 67819 ctgaaaaataaataaaaaga 67800

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>emb|AL935285.6| Zebrafish DNA sequence from clone DKEY-37A1, complete sequence
          Length = 230323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaataaataaaaagactgt 185
              ||||||||||||||||||||
Sbjct: 167469 aaaataaataaaaagactgt 167450

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>dbj|AP005431.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-193E15, complete
            sequence
          Length = 177785

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  tgatgatacaaaaaggaatg 321
            ||||||||||||||||||||
Sbjct: 9496 tgatgatacaaaaaggaatg 9477

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>emb|AL833780.6| Mouse DNA sequence from clone RP23-24M22 on chromosome 2, complete
              sequence
          Length = 194630

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    aggttgatgatacaaaaaggaatg 321
              ||||||| ||||||||||||||||
Sbjct: 162601 aggttgaagatacaaaaaggaatg 162578


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,959,626
Number of Sequences: 3902068
Number of extensions: 6959626
Number of successful extensions: 225169
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224756
Number of HSP's gapped (non-prelim): 413
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result