>VHSJ_LAMBD (P03749) Host specificity protein J|
          Length = 1132

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +2

Query: 197  GRKRLLLGRTLY-MCTQSILISGSCLRNELAGFQLLGFCSAPD------DAPTDVTKLQT 355
            G KR + GRT Y MC   +L++G+ + +  A   +  F    D      +     T   T
Sbjct: 1043 GSKRTVSGRTTYSMCYLKVLMNGAVIYDGAANEAVQVFSRIVDMPAGRGNVILTFTLTST 1102

Query: 356  AHLTDLAPYWYMSSIR 403
             H  D+ PY + S ++
Sbjct: 1103 RHSADIPPYTFASDVQ 1118

>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 451  PGNGSESGCACKLWELPNAAHVPVRRKVRQMCSLQ 347
            PG GS  G +  LWE+  +  +P  ++ R M   Q
Sbjct: 3715 PGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQ 3749

>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 451  PGNGSESGCACKLWELPNAAHVPVRRKVRQMCSLQ 347
            PG GS  G +  LWE+  +  +P  ++ R M   Q
Sbjct: 3501 PGGGSHGGSSMSLWEVMQSDMIPEDQRARLMADFQ 3535

>MURE_BUCAI (P57316) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 497

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +1

Query: 13  KNLKYIEHK*KKLNLNINMVGSCICLTQLLR*FDEF*ATMYYQKLLFIPQARQVQRREKW 192
           K L +  HK KK+ LN +     I L +LL          +Y   + I   +Q +   KW
Sbjct: 225 KWLLFSTHKVKKIILNADDQYGKIWLKKLLN---------FYTVAVTIQNRKQKKYSTKW 275

Query: 193 RGEEKVASGKNSIHVHSKHSY-FGKLPS**TCRISVAGLLL 312
                +    NSI++  + S+  G++ S    R +V  LLL
Sbjct: 276 INATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVTNLLL 316

>ABCA1_HUMAN (O95477) ATP-binding cassette sub-family A member 1 (ATP-binding|
           cassette transporter 1) (ATP-binding cassette 1) (ABC-1)
           (Cholesterol efflux regulatory protein)
          Length = 2261

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +3

Query: 69  GGFMYLSDPVTQMIRRILSNYVLPKTLVYSASSPGP 176
           GGF YL D V Q I R+L+     KT VY    P P
Sbjct: 591 GGFAYLQDVVEQAIIRVLTG-TEKKTGVYMQQMPYP 625

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 451  PGNGSESGCACKLWELPNAAHVPVRRKVRQMCSLQ 347
            PG GS  G    LWE+  +  +P  ++ + M   Q
Sbjct: 3712 PGGGSHGGSTMSLWEVMQSDLIPEEQRAQLMADFQ 3746

>NU4M_ASCSU (P24880) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 409

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 119 NSSNHLSNWVRQIHEPTMFMFKFSFFYLCSIYFRFFFLW 3
           NSS +L  +      P +F++  SFF++  +YF F   W
Sbjct: 119 NSSYYLIFYAALCSFPFLFVYFKSFFFISLVYFDFNLSW 157

>MYC1_XENLA (P06171) Myc-A protein (Myc I protein) (C-Myc I)|
          Length = 419

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 355 SLQFRDISWGIIGCRAEAQQLKSCKFITKAASRNKNALSAHV*SSSQKQPFP 200
           S+  +D  W      A+ +++ S K  +  ASR ++ALS+     SQ  P P
Sbjct: 105 SIVIQDCMWSGFSAAAKLEKVVSEKLASYQASRKESALSSSSPCQSQPPPSP 156

>CLPX_STRMU (Q8DUI0) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 410

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 182 GRNGEGRKRLLLGRTLYMCTQSILISGSCLRNELAGFQLLGFCSAP 319
           G+N +  K+++ G  +++C + + +S   +R ELA   L      P
Sbjct: 17  GKNQDEVKKIIAGNGVFICNECVELSQEIIREELAEEVLADLSEVP 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,228,013
Number of Sequences: 219361
Number of extensions: 1376094
Number of successful extensions: 3968
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3967
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)