ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ620676.1| Oryza sativa (japonica cultivar-group) mRNA for ... 184 2e-43
2dbj|AK111759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
3gb|AY525368.1| Oryza sativa (japonica cultivar-group) zinc finge... 176 4e-41
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
5dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
6dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
7dbj|AK059153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
8gb|AY112524.1| Zea mays CL50600_1 mRNA sequence 131 2e-27
9gb|AY581829.1| Cynodon dactylon putative zinc finger protein mRN... 105 1e-19
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.099
11dbj|AB193295.1| Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, co... 46 0.099
12dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.099
13gb|BC107277.1| Mus musculus actin related protein M1, mRNA (cDNA... 42 1.6
14ref|NM_029690.1| Mus musculus actin related protein M1 (Arpm1), ... 42 1.6
15gb|BC107278.1| Mus musculus cDNA clone IMAGE:40052701 42 1.6
16ref|XM_911785.2| PREDICTED: Mus musculus actin related protein M... 42 1.6
17ref|XM_724904.1| Plasmodium yoelii yoelii str. 17XNL myosin D (P... 42 1.6
18ref|XM_727252.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 1.6
19ref|XM_667192.1| Plasmodium berghei strain ANKA hypothetical pro... 42 1.6
20emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21gb|AC120377.25| Mus musculus chromosome 3, clone RP24-262L5, com... 42 1.6
22gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, co... 42 1.6
23dbj|AK007208.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.6
24dbj|AK047260.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 42 1.6
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
26gb|AC135895.2| Homo sapiens 12 BAC RP11-168J19 (Roswell Park Can... 42 1.6
27gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 42 1.6
28gb|AC149285.5| Mus musculus BAC clone RP23-139J2 from 5, complet... 42 1.6
29emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chr... 42 1.6
30gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Ho... 40 6.1
31gb|AC091353.6| Rattus norvegicus 4 BAC CH230-1B20 (Children's Ho... 40 6.1
32gb|AF453322.1| Brassica oleracea zinc finger protein LSD1 (LSD1)... 40 6.1
33gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosom... 40 6.1
34gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, compl... 40 6.1
35gb|AC118469.2| Homo sapiens chromosome 1 clone RP11-366L18, comp... 40 6.1
36emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in ... 40 6.1
37gb|AC073333.5| Homo sapiens BAC clone RP11-455J15 from 7, comple... 40 6.1
38gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complet... 40 6.1
39gb|AC157327.3| Dasypus novemcinctus, clone Dasypus novemcinctus-... 40 6.1
40gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 6.1
41dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.1
42emb|AL672259.9| Mouse DNA sequence from clone RP23-169M4 on chro... 40 6.1
43dbj|AP000859.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.1 
>emb|AJ620676.1| Oryza sativa (japonica cultivar-group) mRNA for zinc finger
           protein, clone Z52
          Length = 715

 Score =  184 bits (93), Expect = 2e-43
 Identities = 147/165 (89%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttcagttgctgggcttctgctctgcacccgatgatgccccaactgatgtcacgaaactgc 350
           ||||| ||||||||||||| |||| ||| | ||| ||||||||||||||||| ||| |||
Sbjct: 437 ttcagctgctgggcttctggtctgtaccaggtgaggccccaactgatgtcacaaaattgc 378

                                                                       
Query: 351 agactgcacatttgacggaccttgcgccgtactggtacatgagcagcattcggcaactcc 410
           ||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||  |||
Sbjct: 377 agactgcgcatttgacagaccttgcgccatactggtacatgagcagcatacggcagttcc 318

                                                        
Query: 411 cacagtttacatgcgcaacctgattcgcttccattgccaggttga 455
           | ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 317 cgcagtttacatgcgcaacttgatttgcttccatagccaggttga 273



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 210 tgcttctgggaagaactctatacatgtgcactcaaagcat 249
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 521 tgcttcagggaagaactctatacatgtgcactcaaagcat 482



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
           |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 651 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 593

                
Query: 162 agctc 166
            ||||
Sbjct: 592 ggctc 588
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>dbj|AK111759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055E16, full
           insert sequence
          Length = 1221

 Score =  184 bits (93), Expect = 2e-43
 Identities = 147/165 (89%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttcagttgctgggcttctgctctgcacccgatgatgccccaactgatgtcacgaaactgc 350
           ||||| ||||||||||||| |||| ||| | ||| ||||||||||||||||| ||| |||
Sbjct: 952 ttcagctgctgggcttctggtctgtaccaggtgaggccccaactgatgtcacaaaattgc 893

                                                                       
Query: 351 agactgcacatttgacggaccttgcgccgtactggtacatgagcagcattcggcaactcc 410
           ||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||  |||
Sbjct: 892 agactgcgcatttgacagaccttgcgccatactggtacatgagcagcatacggcagttcc 833

                                                        
Query: 411 cacagtttacatgcgcaacctgattcgcttccattgccaggttga 455
           | ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 832 cgcagtttacatgcgcaacttgatttgcttccatagccaggttga 788



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                    
Query: 210  tgcttctgggaagaactctatacatgtgcactcaaagcat 249
            |||||| |||||||||||||||||||||||||||||||||
Sbjct: 1036 tgcttcagggaagaactctatacatgtgcactcaaagcat 997



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 102  cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
            |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 1166 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 1108

                 
Query: 162  agctc 166
             ||||
Sbjct: 1107 ggctc 1103
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>gb|AY525368.1| Oryza sativa (japonica cultivar-group) zinc finger protein LSD1
           mRNA, complete cds
          Length = 988

 Score =  176 bits (89), Expect = 4e-41
 Identities = 146/165 (88%)
 Strand = Plus / Minus

                                                                       
Query: 291 ttcagttgctgggcttctgctctgcacccgatgatgccccaactgatgtcacgaaactgc 350
           ||||| ||||||||||||| |||  ||| | ||| ||||||||||||||||| ||| |||
Sbjct: 622 ttcagctgctgggcttctggtctataccaggtgaggccccaactgatgtcacaaaattgc 563

                                                                       
Query: 351 agactgcacatttgacggaccttgcgccgtactggtacatgagcagcattcggcaactcc 410
           ||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||  |||
Sbjct: 562 agactgcgcatttgacagaccttgcgccatactggtacatgagcagcatacggcagttcc 503

                                                        
Query: 411 cacagtttacatgcgcaacctgattcgcttccattgccaggttga 455
           | ||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 502 cgcagtttacatgcgcaacttgatttgcttccatagccaggttga 458



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 210 tgcttctgggaagaactctatacatgtgcactcaaagcat 249
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 706 tgcttcagggaagaactctatacatgtgcactcaaagcat 667



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                       
Query: 102 cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
           |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 838 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 780

                
Query: 162 agctc 166
            ||||
Sbjct: 779 ggctc 775
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  139 bits (70), Expect = 9e-30
 Identities = 106/118 (89%)
 Strand = Plus / Plus

                                                                           
Query: 327     ccccaactgatgtcacgaaactgcagactgcacatttgacggaccttgcgccgtactggt 386
               |||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||
Sbjct: 3454925 ccccaactgatgtcacaaaattgcagactgcgcatttgacagaccttgcgccatactggt 3454984

                                                                         
Query: 387     acatgagcagcattcggcaactcccacagtttacatgcgcaacctgattcgcttccat 444
               ||||||||||||| |||||  |||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 3454985 acatgagcagcatacggcagttcccgcagtttacatgcgcaacttgatttgctgccat 3455042



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                       
Query: 210     tgcttctgggaagaactctatacatgtgcactcaaagcat 249
               |||||| |||||||||||||||||||||||||||||||||
Sbjct: 3454639 tgcttcagggaagaactctatacatgtgcactcaaagcat 3454678



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                           
Query: 102     cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
               |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 3454509 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 3454567

                    
Query: 162     agctc 166
                ||||
Sbjct: 3454568 ggctc 3454572
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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498E12
          Length = 153523

 Score =  139 bits (70), Expect = 9e-30
 Identities = 106/118 (89%)
 Strand = Plus / Plus

                                                                         
Query: 327   ccccaactgatgtcacgaaactgcagactgcacatttgacggaccttgcgccgtactggt 386
             |||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||
Sbjct: 88344 ccccaactgatgtcacaaaattgcagactgcgcatttgacagaccttgcgccatactggt 88403

                                                                       
Query: 387   acatgagcagcattcggcaactcccacagtttacatgcgcaacctgattcgcttccat 444
             ||||||||||||| |||||  |||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 88404 acatgagcagcatacggcagttcccgcagtttacatgcgcaacttgatttgctgccat 88461



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 210   tgcttctgggaagaactctatacatgtgcactcaaagcat 249
             |||||| |||||||||||||||||||||||||||||||||
Sbjct: 88058 tgcttcagggaagaactctatacatgtgcactcaaagcat 88097



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 102   cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
             |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 87928 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 87986

                  
Query: 162   agctc 166
              ||||
Sbjct: 87987 ggctc 87991
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>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0672D01
          Length = 146954

 Score =  139 bits (70), Expect = 9e-30
 Identities = 106/118 (89%)
 Strand = Plus / Plus

                                                                         
Query: 327   ccccaactgatgtcacgaaactgcagactgcacatttgacggaccttgcgccgtactggt 386
             |||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||
Sbjct: 10642 ccccaactgatgtcacaaaattgcagactgcgcatttgacagaccttgcgccatactggt 10701

                                                                       
Query: 387   acatgagcagcattcggcaactcccacagtttacatgcgcaacctgattcgcttccat 444
             ||||||||||||| |||||  |||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 10702 acatgagcagcatacggcagttcccgcagtttacatgcgcaacttgatttgctgccat 10759



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                     
Query: 210   tgcttctgggaagaactctatacatgtgcactcaaagcat 249
             |||||| |||||||||||||||||||||||||||||||||
Sbjct: 10356 tgcttcagggaagaactctatacatgtgcactcaaagcat 10395



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 102   cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
             |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 10226 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 10284

                  
Query: 162   agctc 166
              ||||
Sbjct: 10285 ggctc 10289
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>dbj|AK059153.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B12, full
           insert sequence
          Length = 1462

 Score =  139 bits (70), Expect = 9e-30
 Identities = 106/118 (89%)
 Strand = Plus / Minus

                                                                       
Query: 327 ccccaactgatgtcacgaaactgcagactgcacatttgacggaccttgcgccgtactggt 386
           |||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||||
Sbjct: 958 ccccaactgatgtcacaaaattgcagactgcgcatttgacagaccttgcgccatactggt 899

                                                                     
Query: 387 acatgagcagcattcggcaactcccacagtttacatgcgcaacctgattcgcttccat 444
           ||||||||||||| |||||  |||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 898 acatgagcagcatacggcagttcccgcagtttacatgcgcaacttgatttgctgccat 841



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                    
Query: 210  tgcttctgggaagaactctatacatgtgcactcaaagcat 249
            |||||| |||||||||||||||||||||||||||||||||
Sbjct: 1244 tgcttcagggaagaactctatacatgtgcactcaaagcat 1205



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 102  cagatgattcgacgaattttgagcaactatgtattaccaaaaactcttgtttattccgca 161
            |||| |||||||||||||||||||| ||| |||||    ||||||||  |||||||||||
Sbjct: 1374 cagacgattcgacgaattttgagca-ctaggtatttagcaaaactctcatttattccgca 1316

                 
Query: 162  agctc 166
             ||||
Sbjct: 1315 ggctc 1311
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>gb|AY112524.1| Zea mays CL50600_1 mRNA sequence
          Length = 1046

 Score =  131 bits (66), Expect = 2e-27
 Identities = 138/162 (85%)
 Strand = Plus / Plus

                                                                       
Query: 292 tcagttgctgggcttctgctctgcacccgatgatgccccaactgatgtcacgaaactgca 351
           |||| |||||||||||||||||||||| | ||| |  ||||| |||||||| ||||||||
Sbjct: 346 tcagctgctgggcttctgctctgcaccaggtgaggttccaaccgatgtcacaaaactgca 405

                                                                       
Query: 352 gactgcacatttgacggaccttgcgccgtactggtacatgagcagcattcggcaactccc 411
           ||| || || || |||||||  || ||||||||||||||||||||||| |||||  ||||
Sbjct: 406 gaccgcgcacttcacggaccgagccccgtactggtacatgagcagcatgcggcagttccc 465

                                                     
Query: 412 acagtttacatgcgcaacctgattcgcttccattgccaggtt 453
            ||||| |||||||| || ||||| |||||||| ||||||||
Sbjct: 466 gcagttcacatgcgcgacttgatttgcttccatagccaggtt 507



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 211 gcttctgggaagaactctatacatgtgcactcaaagcat 249
           ||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 gcttcagggaagaactctatacatgtgcactcaaagcat 300
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>gb|AY581829.1| Cynodon dactylon putative zinc finger protein mRNA, partial cds
          Length = 428

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 297 tgctgggcttctgctctgcacccgatgatgccccaactgatgtcacgaaactgcagactg 356
           |||| ||||||||||||| ||| | ||| ||||||||||||||||| ||| |||||||||
Sbjct: 109 tgcttggcttctgctctgaaccaggtgaggccccaactgatgtcacaaaattgcagactg 50

                                                            
Query: 357 cacatttgacggaccttgcgccgtactggtacatgagcagcattcggca 405
           | |||||||| ||||| || || |||||||||||||||| ||| |||||
Sbjct: 49  cgcatttgacagacctagcaccatactggtacatgagcaacatacggca 1



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ggaagaactctatacatgtgc 238
           |||||||||||||||||||||
Sbjct: 190 ggaagaactctatacatgtgc 170
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 180      aagggagaaatggagaggggagg 202
                |||||||||||||||||||||||
Sbjct: 12618794 aagggagaaatggagaggggagg 12618816
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>dbj|AB193295.1| Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds
          Length = 678

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 413 cagtttacatgcgcaacctgattcgcttcca 443
           ||||| |||||||| ||||||||||||||||
Sbjct: 344 cagttcacatgcgctacctgattcgcttcca 314
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0537A05
          Length = 152396

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 180    aagggagaaatggagaggggagg 202
              |||||||||||||||||||||||
Sbjct: 130404 aagggagaaatggagaggggagg 130426
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>gb|BC107277.1| Mus musculus actin related protein M1, mRNA (cDNA clone MGC:130225
            IMAGE:40052700), complete cds
          Length = 1261

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 233  atgtgcactcaaagcattcttattt 257
            |||| ||||||||||||||||||||
Sbjct: 1217 atgtacactcaaagcattcttattt 1193
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>ref|NM_029690.1| Mus musculus actin related protein M1 (Arpm1), mRNA
          Length = 1893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 233  atgtgcactcaaagcattcttattt 257
            |||| ||||||||||||||||||||
Sbjct: 1174 atgtacactcaaagcattcttattt 1150
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>gb|BC107278.1| Mus musculus cDNA clone IMAGE:40052701
          Length = 1261

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 233 atgtgcactcaaagcattcttattt 257
           |||| ||||||||||||||||||||
Sbjct: 45  atgtacactcaaagcattcttattt 69
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>ref|XM_911785.2| PREDICTED: Mus musculus actin related protein M1 (Arpm1), mRNA
          Length = 1194

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 233  atgtgcactcaaagcattcttattt 257
            |||| ||||||||||||||||||||
Sbjct: 1192 atgtacactcaaagcattcttattt 1168
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>ref|XM_724904.1| Plasmodium yoelii yoelii str. 17XNL myosin D (PY02134) partial mRNA
          Length = 4745

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 117  attttgagcaactatgtatta 137
            |||||||||||||||||||||
Sbjct: 1511 attttgagcaactatgtatta 1531
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>ref|XM_727252.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300247.00.0)
           partial mRNA
          Length = 516

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 117 attttgagcaactatgtatta 137
           |||||||||||||||||||||
Sbjct: 311 attttgagcaactatgtatta 331
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>ref|XM_667192.1| Plasmodium berghei strain ANKA hypothetical protein (PB000419.02.0)
           partial mRNA
          Length = 1014

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 117 attttgagcaactatgtatta 137
           |||||||||||||||||||||
Sbjct: 917 attttgagcaactatgtatta 937
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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 27    tatagaacacaagtaaaagaagcta 51
             ||||||||||||||| |||||||||
Sbjct: 66802 tatagaacacaagtacaagaagcta 66826
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>gb|AC120377.25| Mus musculus chromosome 3, clone RP24-262L5, complete sequence
          Length = 158004

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    atgtgcactcaaagcattcttattt 257
              |||| ||||||||||||||||||||
Sbjct: 107212 atgtacactcaaagcattcttattt 107188
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>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 233    atgtgcactcaaagcattcttattt 257
              |||| ||||||||||||||||||||
Sbjct: 171272 atgtacactcaaagcattcttattt 171296
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>dbj|AK007208.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:1700119I24 product:similar to ACTIN
            RELATED PROTEIN [Homo sapiens], full insert sequence
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 233  atgtgcactcaaagcattcttattt 257
            |||| ||||||||||||||||||||
Sbjct: 1152 atgtacactcaaagcattcttattt 1128
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>dbj|AK047260.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930042O03 product:similar to
            ACTIN RELATED PROTEIN [Homo sapiens], full insert
            sequence
          Length = 1893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 233  atgtgcactcaaagcattcttattt 257
            |||| ||||||||||||||||||||
Sbjct: 1174 atgtacactcaaagcattcttattt 1150
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 27       tatagaacacaagtaaaagaagcta 51
                ||||||||||||||| |||||||||
Sbjct: 20556174 tatagaacacaagtacaagaagcta 20556198
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>gb|AC135895.2| Homo sapiens 12 BAC RP11-168J19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 102539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   ggagaaatggagaggggagga 203
             |||||||||||||||||||||
Sbjct: 60476 ggagaaatggagaggggagga 60496
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>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 20     tgaaatatatagaacacaagt 40
              |||||||||||||||||||||
Sbjct: 136133 tgaaatatatagaacacaagt 136153
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>gb|AC149285.5| Mus musculus BAC clone RP23-139J2 from 5, complete sequence
          Length = 201978

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    agggagaaatggagaggggag 201
              |||||||||||||||||||||
Sbjct: 114397 agggagaaatggagaggggag 114417
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>emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chromosome 4, complete
             sequence
          Length = 169452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    aacacaagtaaaagaagctaa 52
             |||||||||||||||||||||
Sbjct: 96659 aacacaagtaaaagaagctaa 96639
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>gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217673

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ggagaaatggagaggggagg 202
             ||||||||||||||||||||
Sbjct: 87783 ggagaaatggagaggggagg 87764
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>gb|AC091353.6| Rattus norvegicus 4 BAC CH230-1B20 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242904

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    ggagaaatggagaggggagg 202
              ||||||||||||||||||||
Sbjct: 209248 ggagaaatggagaggggagg 209229
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>gb|AF453322.1| Brassica oleracea zinc finger protein LSD1 (LSD1) mRNA, complete
           cds
          Length = 1027

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 408 tcccacagtttacatgcgcaacctgatt 435
           |||||||||| | |||||||||||||||
Sbjct: 465 tcccacagttgatatgcgcaacctgatt 438
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>gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosome 8, complete sequence
          Length = 182816

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ctatacatgtgcactcaaag 246
             ||||||||||||||||||||
Sbjct: 61852 ctatacatgtgcactcaaag 61871
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>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence
          Length = 253733

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    gggagaaatggagaggggag 201
              ||||||||||||||||||||
Sbjct: 116209 gggagaaatggagaggggag 116190
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>gb|AC118469.2| Homo sapiens chromosome 1 clone RP11-366L18, complete sequence
          Length = 96001

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   gaagggagaaatggagaggggagg 202
             ||||||||||| ||||||||||||
Sbjct: 59999 gaagggagaaaaggagaggggagg 59976
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>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9, complete
              sequence
          Length = 217065

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    agaggggaggaaaaggttgc 212
              ||||||||||||||||||||
Sbjct: 101849 agaggggaggaaaaggttgc 101830
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>gb|AC073333.5| Homo sapiens BAC clone RP11-455J15 from 7, complete sequence
          Length = 165616

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   gcaactatgtattaccaaaa 143
             ||||||||||||||||||||
Sbjct: 81409 gcaactatgtattaccaaaa 81428
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>gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complete sequence
          Length = 181150

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    aagaagctaaatttgaacat 62
             ||||||||||||||||||||
Sbjct: 40627 aagaagctaaatttgaacat 40646
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>gb|AC157327.3| Dasypus novemcinctus, clone Dasypus novemcinctus-10241875J11, complete
             sequence
          Length = 41664

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   gaggggaggaaaaggttgct 213
             ||||||||||||||||||||
Sbjct: 18548 gaggggaggaaaaggttgct 18529
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     aagcattcttatttcgggaa 263
               ||||||||||||||||||||
Sbjct: 2241443 aagcattcttatttcgggaa 2241462
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>dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT16I07, TM0040,
             complete sequence
          Length = 92281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    atagaacacaagtaaaagaa 47
             ||||||||||||||||||||
Sbjct: 37421 atagaacacaagtaaaagaa 37440
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>emb|AL672259.9| Mouse DNA sequence from clone RP23-169M4 on chromosome 2, complete
             sequence
          Length = 179832

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   gaagggagaaatggagaggggagg 202
             |||||||| |||||||||||||||
Sbjct: 93311 gaagggagtaatggagaggggagg 93288
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>dbj|AP000859.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-17I22, complete
             sequences
          Length = 118455

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aagtaaaagaagctaaattt 56
             ||||||||||||||||||||
Sbjct: 55347 aagtaaaagaagctaaattt 55328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,059,988
Number of Sequences: 3902068
Number of extensions: 4059988
Number of successful extensions: 80444
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80256
Number of HSP's gapped (non-prelim): 188
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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