Clone Information

BLAST Search Result

Clone Name	rbart57a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC137759.4\| Oryza sativa (japonica cultivar-group) chromosome...	402	e-109
2	gb\|AC136377.4\| Oryza sativa (japonica cultivar-group) chromosome...	402	e-109
3	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	402	e-109
4	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	402	e-109
5	ref\|XM_463664.1\| Oryza sativa (japonica cultivar-group), predic...	107	4e-20
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	107	4e-20
7	dbj\|AP004223.2\| Oryza sativa (japonica cultivar-group) genomic D...	107	4e-20
8	ref\|XM_470882.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
9	gb\|AC091787.6\| Oryza sativa (japonica cultivar-group) chromosome...	58	3e-05
10	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	58	3e-05
11	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
12	emb\|AL138715.11\| Human DNA sequence from clone RP11-77P19 on chr...	44	0.45
13	emb\|AL163202.2\|HS21C002 Homo sapiens chromosome 21 segment HS21C002	44	0.45
14	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	44	0.45
15	gb\|AC093787.3\| Homo sapiens BAC clone RP11-215P9 from 2, complet...	44	0.45
16	emb\|AJ239321.3\|HS133G21 Homo sapiens chromosome 21 sequence from...	44	0.45
17	emb\|AJ239322.3\|HS156L9 Homo sapiens sequence from PAC RPCI-1 156...	44	0.45
18	dbj\|AB070940.1\| Streptomyces avermitilis oligomycin biosynthetic...	44	0.45
19	gb\|AC123720.32\| Mus musculus chromosome 10, clone RP23-413G8, co...	42	1.8
20	ref\|XM_756993.1\| Ustilago maydis 521 hypothetical protein (UM059...	42	1.8
21	gb\|AC100263.9\| Mus musculus chromosome 19, clone RP23-66K19, com...	42	1.8
22	emb\|AL161630.12\| Human DNA sequence from clone RP11-500B12 on ch...	42	1.8
23	ref\|XM_966493.1\| PREDICTED: Tribolium castaneum similar to novel...	42	1.8
24	gb\|AC149219.4\| Mus musculus BAC clone RP24-91L19 from 19, comple...	42	1.8
25	emb\|AL589661.21\| Mouse DNA sequence from clone RP23-58B7 on chro...	42	1.8
26	gb\|AC157570.5\| Mus musculus BAC clone RP23-105H5 from chromosome...	40	7.0
27	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	40	7.0
28	gb\|AF421553.1\| Squash mild leaf curl virus-[Imperial Valley] SLC...	40	7.0
29	gb\|AY101577.2\| Francisella tularensis subsp. tularensis insertio...	40	7.0
30	ref\|XM_805033.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	7.0
31	emb\|AL591791.1\|SME591791 Sinorhizobium meliloti 1021 complete ch...	40	7.0
32	emb\|AL691458.7\| Human DNA sequence from clone RP11-13F15 on chro...	40	7.0
33	emb\|AL939120.1\|SCO939120 Streptomyces coelicolor A3(2) complete ...	40	7.0
34	gb\|AF128845.1\|AF128845 Sinorhizobium meliloti RluD (rluD) gene, ...	40	7.0
35	gb\|CP000116.1\| Thiobacillus denitrificans ATCC 25259, complete g...	40	7.0
36	gb\|AC068535.7\| Homo sapiens BAC clone RP11-120M14 from 2, comple...	40	7.0
37	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	7.0
38	dbj\|AP006618.1\| Nocardia farcinica IFM 10152 DNA, complete genome	40	7.0
39	gb\|AC115296.6\| Mus musculus BAC clone RP23-195I8 from chromosome...	40	7.0
40	emb\|AJ749949.1\| Francisella tularensis subsp. tularensis SCHU S4...	40	7.0
41	gb\|DQ285015.1\| Squash mild leaf curl virus isolate 4 segment DNA...	40	7.0
42	gb\|L20240.1\|SQLBR1A Squash leaf curl virus movement protein (BR1...	40	7.0
43	dbj\|AB037369.1\| Sinorhizobium meliloti rluD, rpoH1 genes for pse...	40	7.0

>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0008H02, complete sequence
          Length = 143438

 Score =  402 bits (203), Expect = e-109
 Identities = 344/391 (87%)
 Strand = Plus / Minus

                                                                        
Query: 113  atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 172
            |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 4802 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 4743

                                                                        
Query: 173  ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 232
            |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 4742 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 4683

                                                                        
Query: 233  gcagcgtgactggcccggacatggccggctcgccccagccgaagcctgcgccgttgaacg 292
            |||||||||| || |||||||| |||||| |||||||||||||| | ||||||| ||| |
Sbjct: 4682 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 4623

                                                                        
Query: 293  cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 352
            ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 4622 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 4563

                                                                        
Query: 353  cctcgaaatagtccaccgccgaccgcatatactcgtccgtcaccatccgcacggcctcct 412
            ||||||| |||||||||||||||||||| ||| |||| |||||||||||||| ||| |||
Sbjct: 4562 cctcgaagtagtccaccgccgaccgcatgtacccgtcggtcaccatccgcaccgccgcct 4503

                                                                        
Query: 413  gcaccttcccggccgcgcgggacaccggcgccgacagcagatctcccgccgtggcaagcg 472
            |||||  ||| |||||||| |||  ||||| ||||||||| || || || || || | ||
Sbjct: 4502 gcaccagccccgccgcgcgcgacggcggcgacgacagcagctcgccggcggtcgccaccg 4443

                                           
Query: 473  cgttggtcagcacgatgccgttcccgaagta 503
            |||| ||||||||||||||||| ||||||||
Sbjct: 4442 cgttcgtcagcacgatgccgttgccgaagta 4412

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>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score =  402 bits (203), Expect = e-109
 Identities = 344/391 (87%)
 Strand = Plus / Minus

                                                                         
Query: 113   atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 172
             |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 91119 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 91060

                                                                         
Query: 173   ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 232
             |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 91059 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 91000

                                                                         
Query: 233   gcagcgtgactggcccggacatggccggctcgccccagccgaagcctgcgccgttgaacg 292
             |||||||||| || |||||||| |||||| |||||||||||||| | ||||||| ||| |
Sbjct: 90999 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 90940

                                                                         
Query: 293   cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 352
             ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 90939 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 90880

                                                                         
Query: 353   cctcgaaatagtccaccgccgaccgcatatactcgtccgtcaccatccgcacggcctcct 412
             ||||||| |||||||||||||||||||| ||| |||| |||||||||||||| ||| |||
Sbjct: 90879 cctcgaagtagtccaccgccgaccgcatgtacccgtcggtcaccatccgcaccgccgcct 90820

                                                                         
Query: 413   gcaccttcccggccgcgcgggacaccggcgccgacagcagatctcccgccgtggcaagcg 472
             |||||  ||| |||||||| |||  ||||| ||||||||| || || || || || | ||
Sbjct: 90819 gcaccagccccgccgcgcgcgacggcggcgacgacagcagctcgccggcggtcgccaccg 90760

                                            
Query: 473   cgttggtcagcacgatgccgttcccgaagta 503
             |||| ||||||||||||||||| ||||||||
Sbjct: 90759 cgttcgtcagcacgatgccgttgccgaagta 90729

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  402 bits (203), Expect = e-109
 Identities = 344/391 (87%)
 Strand = Plus / Minus

                                                                            
Query: 113      atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 172
                |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 17497105 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17497046

                                                                            
Query: 173      ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 232
                |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 17497045 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 17496986

                                                                            
Query: 233      gcagcgtgactggcccggacatggccggctcgccccagccgaagcctgcgccgttgaacg 292
                |||||||||| || |||||||| |||||| |||||||||||||| | ||||||| ||| |
Sbjct: 17496985 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 17496926

                                                                            
Query: 293      cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 352
                ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 17496925 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 17496866

                                                                            
Query: 353      cctcgaaatagtccaccgccgaccgcatatactcgtccgtcaccatccgcacggcctcct 412
                ||||||| |||||||||||||||||||| ||| |||| |||||||||||||| ||| |||
Sbjct: 17496865 cctcgaagtagtccaccgccgaccgcatgtacccgtcggtcaccatccgcaccgccgcct 17496806

                                                                            
Query: 413      gcaccttcccggccgcgcgggacaccggcgccgacagcagatctcccgccgtggcaagcg 472
                |||||  ||| |||||||| |||  ||||| ||||||||| || || || || || | ||
Sbjct: 17496805 gcaccagccccgccgcgcgcgacggcggcgacgacagcagctcgccggcggtcgccaccg 17496746

                                               
Query: 473      cgttggtcagcacgatgccgttcccgaagta 503
                |||| ||||||||||||||||| ||||||||
Sbjct: 17496745 cgttcgtcagcacgatgccgttgccgaagta 17496715

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  402 bits (203), Expect = e-109
 Identities = 344/391 (87%)
 Strand = Plus / Minus

                                                                            
Query: 113      atcatatctcgtccataagctcttggaaagtgtccatggcggacgccggcaggccgagca 172
                |||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct: 17590815 atcatatctcgtccatgagctcttggaaggcgtccatggcggacgccgggaggccgagga 17590756

                                                                            
Query: 173      ggacgttgatgctctttctctccttcccgtgcgcgaggaagagtatgacctccttctccg 232
                |||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 17590755 ggacgttgatgctcttcctctcctcgccgtgcgcgaggaagaggatgacctccttctccg 17590696

                                                                            
Query: 233      gcagcgtgactggcccggacatggccggctcgccccagccgaagcctgcgccgttgaacg 292
                |||||||||| || |||||||| |||||| |||||||||||||| | ||||||| ||| |
Sbjct: 17590695 gcagcgtgacggggccggacatcgccggcgcgccccagccgaagtcggcgccgtggaagg 17590636

                                                                            
Query: 293      cgagccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtgg 352
                ||||||  |||||||| ||||| |||||||||||||||||||||||||  || ||||| |
Sbjct: 17590635 cgagcctggaccacgtcgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcg 17590576

                                                                            
Query: 353      cctcgaaatagtccaccgccgaccgcatatactcgtccgtcaccatccgcacggcctcct 412
                ||||||| |||||||||||||||||||| ||| |||| |||||||||||||| ||| |||
Sbjct: 17590575 cctcgaagtagtccaccgccgaccgcatgtacccgtcggtcaccatccgcaccgccgcct 17590516

                                                                            
Query: 413      gcaccttcccggccgcgcgggacaccggcgccgacagcagatctcccgccgtggcaagcg 472
                |||||  ||| |||||||| |||  ||||| ||||||||| || || || || || | ||
Sbjct: 17590515 gcaccagccccgccgcgcgcgacggcggcgacgacagcagctcgccggcggtcgccaccg 17590456

                                               
Query: 473      cgttggtcagcacgatgccgttcccgaagta 503
                |||| ||||||||||||||||| ||||||||
Sbjct: 17590455 cgttcgtcagcacgatgccgttgccgaagta 17590425

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>ref|XM_463664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1329

 Score =  107 bits (54), Expect = 4e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                        
Query: 295  agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 354
            |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 1142 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 1083

                                                      
Query: 355  tcgaaatagtccaccgccgaccgcatatactcgtccgtcacc 396
            ||||| ||||||||||| || ||||| ||| |||||||||||
Sbjct: 1082 tcgaagtagtccaccgcggagcgcatgtacgcgtccgtcacc 1041



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 476 tggtcagcacgatgccgttcccgaagtacccc 507
           |||||||||||||| |||| ||||||||||||
Sbjct: 970 tggtcagcacgatggcgttgccgaagtacccc 939

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 4e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                            
Query: 295      agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 354
                |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 40503016 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 40502957

                                                          
Query: 355      tcgaaatagtccaccgccgaccgcatatactcgtccgtcacc 396
                ||||| ||||||||||| || ||||| ||| |||||||||||
Sbjct: 40502956 tcgaagtagtccaccgcggagcgcatgtacgcgtccgtcacc 40502915



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 476      tggtcagcacgatgccgttcccgaagtacccc 507
                |||||||||||||| |||| ||||||||||||
Sbjct: 40502844 tggtcagcacgatggcgttgccgaagtacccc 40502813

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>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1033B05
          Length = 138882

 Score =  107 bits (54), Expect = 4e-20
 Identities = 90/102 (88%)
 Strand = Plus / Minus

                                                                         
Query: 295   agccgcgaccacgtggtgatgagcagcgtcgacgccagcgacggccttgcgcgcgtggcc 354
             |||||||||||||  ||||| |||||||||||||||||||||||||  || ||||| |||
Sbjct: 64640 agccgcgaccacgccgtgatcagcagcgtcgacgccagcgacggccgcgcccgcgtcgcc 64581

                                                       
Query: 355   tcgaaatagtccaccgccgaccgcatatactcgtccgtcacc 396
             ||||| ||||||||||| || ||||| ||| |||||||||||
Sbjct: 64580 tcgaagtagtccaccgcggagcgcatgtacgcgtccgtcacc 64539



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 476   tggtcagcacgatgccgttcccgaagtacccc 507
             |||||||||||||| |||| ||||||||||||
Sbjct: 64468 tggtcagcacgatggcgttgccgaagtacccc 64437

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>ref|XM_470882.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 456

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 163 aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 221
           ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 264 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 205

                                
Query: 222 ctccttctccggcagcgtgac 242
           ||||||||||  |||||||||
Sbjct: 204 ctccttctccaacagcgtgac 184

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>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                         
Query: 163   aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 221
             ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 90404 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 90345

                                  
Query: 222   ctccttctccggcagcgtgac 242
             ||||||||||  |||||||||
Sbjct: 90344 ctccttctccaacagcgtgac 90324

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                            
Query: 163      aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 221
                ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 15960013 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 15960072

                                     
Query: 222      ctccttctccggcagcgtgac 242
                ||||||||||  |||||||||
Sbjct: 15960073 ctccttctccaacagcgtgac 15960093

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 69/81 (85%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                            
Query: 163      aggccgagcaggacgttgatgctctttctctccttcccgtgcgcgaggaaga-gtatgac 221
                ||||| |||| ||| |||||||||||||||||||| ||||||   ||||||| | || ||
Sbjct: 15954547 aggccaagcaagacattgatgctctttctctccttgccgtgcattaggaagagggatcac 15954606

                                     
Query: 222      ctccttctccggcagcgtgac 242
                ||||||||||  |||||||||
Sbjct: 15954607 ctccttctccaacagcgtgac 15954627

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>emb|AL138715.11| Human DNA sequence from clone RP11-77P19 on chromosome 13 Contains a
             novel zinc finger protein pseudogene, a novel gene, the 5'
             end of a novel gene and a CpG island, complete sequence
          Length = 161183

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 46    aagcacatgcacaataagcata 67
             ||||||||||||||||||||||
Sbjct: 95435 aagcacatgcacaataagcata 95456

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>emb|AL163202.2|HS21C002 Homo sapiens chromosome 21 segment HS21C002
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 46     aagcacatgcacaataagcata 67
              ||||||||||||||||||||||
Sbjct: 203765 aagcacatgcacaataagcata 203786

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 299     gcgaccacgtggtgatgagcagcgtc 324
               |||||||||||||||||||| |||||
Sbjct: 3535474 gcgaccacgtggtgatgagctgcgtc 3535449

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>gb|AC093787.3| Homo sapiens BAC clone RP11-215P9 from 2, complete sequence
          Length = 86945

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 46   aagcacatgcacaataagcata 67
            ||||||||||||||||||||||
Sbjct: 1587 aagcacatgcacaataagcata 1566

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>emb|AJ239321.3|HS133G21 Homo sapiens chromosome 21 sequence from PAC RPCI-1 133G21 map 21q11.1
             region D21S190, complete sequence
          Length = 115546

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 46    aagcacatgcacaataagcata 67
             ||||||||||||||||||||||
Sbjct: 18341 aagcacatgcacaataagcata 18320

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>emb|AJ239322.3|HS156L9 Homo sapiens sequence from PAC RPCI-1 156L9, complete sequence
          Length = 111293

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 46     aagcacatgcacaataagcata 67
              ||||||||||||||||||||||
Sbjct: 110884 aagcacatgcacaataagcata 110863

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>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster
          Length = 104326

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 299    gcgaccacgtggtgatgagcagcgtc 324
              |||||||||||||||||||| |||||
Sbjct: 102331 gcgaccacgtggtgatgagctgcgtc 102356

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>gb|AC123720.32| Mus musculus chromosome 10, clone RP23-413G8, complete sequence
          Length = 192037

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 406    gcctcctgcaccttcccggccgcgc 430
              ||||||||||||| |||||||||||
Sbjct: 181640 gcctcctgcacctgcccggccgcgc 181664

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>ref|XM_756993.1| Ustilago maydis 521 hypothetical protein (UM05939.1) partial mRNA
          Length = 675

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 314 tgagcagcgtcgacgccagcg 334
           |||||||||||||||||||||
Sbjct: 61  tgagcagcgtcgacgccagcg 41

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>gb|AC100263.9| Mus musculus chromosome 19, clone RP23-66K19, complete sequence
          Length = 188435

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    tgaacataaccatactaccaa 47
             |||||||||||||||||||||
Sbjct: 52211 tgaacataaccatactaccaa 52231

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>emb|AL161630.12| Human DNA sequence from clone RP11-500B12 on chromosome 9 Contains a
              novel gene, a ribosomal protein L35a (RPL35A) and a CpG
              island. pseudogene, complete sequence
          Length = 200970

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 19     taatataatgaacataaccatactaccaa 47
              |||||| ||||| ||||||||||||||||
Sbjct: 109306 taatattatgaaaataaccatactaccaa 109334

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>ref|XM_966493.1| PREDICTED: Tribolium castaneum similar to novel putative protein
           similar to YIL091C yeast hypothetical 84 kD protein from
           SGA1-KTR7 (human) - like (LOC660244), mRNA
          Length = 3723

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 315 gagcagcgtcgacgccagcgacggc 339
           ||||||||||| |||||||||||||
Sbjct: 735 gagcagcgtcgccgccagcgacggc 711

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>gb|AC149219.4| Mus musculus BAC clone RP24-91L19 from 19, complete sequence
          Length = 205546

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tgaacataaccatactaccaa 47
             |||||||||||||||||||||
Sbjct: 65926 tgaacataaccatactaccaa 65906

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>emb|AL589661.21| Mouse DNA sequence from clone RP23-58B7 on chromosome 15, complete
              sequence
          Length = 241432

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 406    gcctcctgcaccttcccggccgcgc 430
              ||||||||||||| |||||||||||
Sbjct: 223851 gcctcctgcacctgcccggccgcgc 223827

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>gb|AC157570.5| Mus musculus BAC clone RP23-105H5 from chromosome 12, complete sequence
          Length = 227238

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   atgctctttctctccttccc 200
             ||||||||||||||||||||
Sbjct: 83055 atgctctttctctccttccc 83074

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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     ccgcgaccacgtggtgatga 316
               ||||||||||||||||||||
Sbjct: 1302081 ccgcgaccacgtggtgatga 1302100

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>gb|AF421553.1| Squash mild leaf curl virus-[Imperial Valley] SLCV-R B component,
           complete sequence
          Length = 2578

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 304 cacgtggtgatgagcagcgtcgac 327
           |||||||||||||| |||||||||
Sbjct: 608 cacgtggtgatgagaagcgtcgac 631

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>gb|AY101577.2| Francisella tularensis subsp. tularensis insertion sequence ISFtu2 and
             O-antigen gene cluster, complete sequence
          Length = 22401

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ataatgaacataaccatact 42
             ||||||||||||||||||||
Sbjct: 17508 ataatgaacataaccatact 17527

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>ref|XM_805033.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511647.50) partial mRNA
          Length = 1734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 396  catccgcacggcctcctgca 415
            ||||||||||||||||||||
Sbjct: 1554 catccgcacggcctcctgca 1535

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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    cgcacggcctcctgcacctt 419
              ||||||||||||||||||||
Sbjct: 224438 cgcacggcctcctgcacctt 224419

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>emb|AL691458.7| Human DNA sequence from clone RP11-13F15 on chromosome 10, complete
             sequence
          Length = 69133

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   atgctctttctctccttccc 200
             ||||||||||||||||||||
Sbjct: 25408 atgctctttctctccttccc 25389

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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   ccggcaggccgagcaggacg 177
             ||||||||||||||||||||
Sbjct: 28601 ccggcaggccgagcaggacg 28582

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>gb|AF128845.1|AF128845 Sinorhizobium meliloti RluD (rluD) gene, partial cds; and RpoH (rpoH)
            gene, complete cds
          Length = 1869

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cgcacggcctcctgcacctt 419
            ||||||||||||||||||||
Sbjct: 1543 cgcacggcctcctgcacctt 1524

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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    caggccgagcaggacgttga 181
              ||||||||||||||||||||
Sbjct: 221646 caggccgagcaggacgttga 221627

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>gb|AC068535.7| Homo sapiens BAC clone RP11-120M14 from 2, complete sequence
          Length = 176703

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 250  gacatggccggctcgccccagccg 273
            ||||| ||||||||||||||||||
Sbjct: 2197 gacattgccggctcgccccagccg 2174

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 467     caagcgcgttggtcagcacg 486
               ||||||||||||||||||||
Sbjct: 3015577 caagcgcgttggtcagcacg 3015596



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 424     gccgcgcgggacaccggcgccgac 447
               |||||||| |||||||||||||||
Sbjct: 1185170 gccgcgcgagacaccggcgccgac 1185147

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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 424     gccgcgcgggacaccggcgccgac 447
               ||||||| ||||||||||||||||
Sbjct: 1722778 gccgcgctggacaccggcgccgac 1722801

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>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    atgctctttctctccttccc 200
              ||||||||||||||||||||
Sbjct: 200621 atgctctttctctccttccc 200640

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>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome
          Length = 1892819

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      ataatgaacataaccatact 42
               ||||||||||||||||||||
Sbjct: 1499918 ataatgaacataaccatact 1499899

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>gb|DQ285015.1| Squash mild leaf curl virus isolate 4 segment DNA-B, complete
           sequence
          Length = 2588

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 304 cacgtggtgatgagcagcgtcgac 327
           |||||||||||||| |||||||||
Sbjct: 608 cacgtggtgatgagaagcgtcgac 631

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>gb|L20240.1|SQLBR1A Squash leaf curl virus movement protein (BR1) gene, complete cds
          Length = 765

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 304 cacgtggtgatgagcagcgtcgac 327
           |||||||||||||| |||||||||
Sbjct: 86  cacgtggtgatgagaagcgtcgac 109

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>dbj|AB037369.1| Sinorhizobium meliloti rluD, rpoH1 genes for pseudouridine synthase
            homolog, sigma factor, partial and complete cds
          Length = 2163

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cgcacggcctcctgcacctt 419
            ||||||||||||||||||||
Sbjct: 1847 cgcacggcctcctgcacctt 1828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,146,798
Number of Sequences: 3902068
Number of extensions: 3146798
Number of successful extensions: 64362
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63566
Number of HSP's gapped (non-prelim): 792
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result