ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57a01 |
|---|---|
| Clone Library Name | barley_pub |
>OXO2_HORVU (P45851) Oxalate oxidase 2 precursor (EC 1.2.3.4) (Germin)| Length = 224 Score = 53.1 bits (126), Expect = 3e-07 Identities = 25/25 (100%), Positives = 25/25 (100%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGSNPPIPTPVLTKALRVEAGVVE Sbjct: 190 LFGSNPPIPTPVLTKALRVEAGVVE 214
>OXO1_HORVU (P45850) Oxalate oxidase 1 (EC 1.2.3.4) (Germin)| Length = 201 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/25 (96%), Positives = 25/25 (100%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGS+PPIPTPVLTKALRVEAGVVE Sbjct: 167 LFGSDPPIPTPVLTKALRVEAGVVE 191
>GER3_WHEAT (P26759) Oxalate oxidase GF-3.8 precursor (EC 1.2.3.4) (Germin| GF-3.8) Length = 224 Score = 50.8 bits (120), Expect = 1e-06 Identities = 24/25 (96%), Positives = 24/25 (96%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGSNPPIP PVLTKALRVEAGVVE Sbjct: 190 LFGSNPPIPKPVLTKALRVEAGVVE 214
>GER2_WHEAT (P15290) Oxalate oxidase GF-2.8 precursor (EC 1.2.3.4) (Germin| GF-2.8) Length = 224 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/25 (96%), Positives = 24/25 (96%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGSNPPIPTPVLTKALRVEA VVE Sbjct: 190 LFGSNPPIPTPVLTKALRVEARVVE 214
>GRIA2_RAT (P19491) Glutamate receptor 2 precursor (GluR-2) (GluR-B) (GluR-K2)| (Glutamate receptor ionotropic, AMPA 2) (AMPA-selective glutamate receptor 2) Length = 883 Score = 31.6 bits (70), Expect = 0.80 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +1 Query: 175 NLFNLLQLHARLTGSLNTCLLLRIIKFCYHAYTELCIDYLRKAPRN*NPAAN 330 +L N+ + L G L +L+ +I+FCY + E + K P+N NP+++ Sbjct: 809 SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNPQNINPSSS 860
>GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 precursor| Length = 220 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVE 360 LFGSNP IP VLTK R + Sbjct: 188 LFGSNPTIPNAVLTKTFRTD 207
>GL23_ARATH (P93000) Germin-like protein subfamily 2 member 3 precursor| Length = 219 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGSNPPIP +L KA A ++ Sbjct: 185 LFGSNPPIPDDLLAKAFGAAAPEIQ 209
>FYV1_MOUSE (Q9Z1T6) FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68)| (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5-kinase) (PIKfyve) (p235) Length = 2052 Score = 29.6 bits (65), Expect = 3.0 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -3 Query: 119 IAIFVKKYSLHFAYICPITICKSNMFQSLRR 27 + IF+++Y ++Y CP C + M +RR Sbjct: 1209 LGIFLERYCFRYSYQCPSMFCDTPMVHHIRR 1239
>LY75_MOUSE (Q60767) Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen)| Length = 1723 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = -3 Query: 278 NSVYAW*QNLMILSRRHVFKLPVNLACSCNKLNKLASWFNLQNQYEELNVLPFIAIFVKK 99 NS Y N MI + RH P + +C KL+ A +++N+ E FV + Sbjct: 1254 NSCY----NFMITNNRHKTVTPEEVQSTCEKLHPKAHSLSIRNEEEN--------TFVVE 1301 Query: 98 YSLHFAYI 75 L+F YI Sbjct: 1302 QLLYFNYI 1309
>GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 precursor| Length = 220 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 LFGS P IP VLT+A R + V+ Sbjct: 188 LFGSKPEIPNAVLTRAFRTDDTTVQ 212
>GL120_ARATH (P92996) Germin-like protein subfamily 1 member 20 precursor (GLP2a| copy 2) (Germin type 2) (GLP2b) (At-GERM2) (AtGER2) Length = 222 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 +FGSNPPI +L +A +++A VV+ Sbjct: 189 VFGSNPPIYPELLARAFQLDASVVK 213
>GL118_ARATH (P92999) Germin-like protein subfamily 1 member 18 precursor (GLP2a| copy 1) Length = 222 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 +FGSNPPI +L +A +++A VV+ Sbjct: 189 VFGSNPPIYPELLARAFQLDASVVK 213
>GL116_ARATH (Q9FIC8) Germin-like protein subfamily 1 member 16 precursor| Length = 222 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/25 (48%), Positives = 19/25 (76%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVVE 345 +FGSNPPI +L +A +++A VV+ Sbjct: 189 VFGSNPPIYPELLARAFQLDANVVK 213
>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)| (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3) Length = 3766 Score = 28.9 bits (63), Expect = 5.2 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 177 LIQFITTACEINRKLEYMSSAENH*ILLPCIYRI 278 ++Q++TT NR EYM SA+ + +LP +R+ Sbjct: 2773 ILQYLTTLTSYNRLAEYMFSAKKNSNILPHPWRL 2806
>GRIA2_PONPY (Q5R4M0) Glutamate receptor 2 precursor (GluR-2) (GluR-B) (GluR-K2)| (Glutamate receptor ionotropic, AMPA 2) (AMPA-selective glutamate receptor 2) Length = 883 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 175 NLFNLLQLHARLTGSLNTCLLLRIIKFCYHAYTELCIDYLRKAPRN*NPAAN 330 +L N+ + L G L +L+ +I+FCY + E + K +N NP+++ Sbjct: 809 SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNINPSSS 860
>GRIA2_MOUSE (P23819) Glutamate receptor 2 precursor (GluR-2) (GluR-B) (GluR-K2)| (Glutamate receptor ionotropic, AMPA 2) (AMPA-selective glutamate receptor 2) Length = 883 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 175 NLFNLLQLHARLTGSLNTCLLLRIIKFCYHAYTELCIDYLRKAPRN*NPAAN 330 +L N+ + L G L +L+ +I+FCY + E + K +N NP+++ Sbjct: 809 SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNINPSSS 860
>GRIA2_HUMAN (P42262) Glutamate receptor 2 precursor (GluR-2) (GluR-B) (GluR-K2)| (Glutamate receptor ionotropic, AMPA 2) (AMPA-selective glutamate receptor 2) Length = 883 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +1 Query: 175 NLFNLLQLHARLTGSLNTCLLLRIIKFCYHAYTELCIDYLRKAPRN*NPAAN 330 +L N+ + L G L +L+ +I+FCY + E + K +N NP+++ Sbjct: 809 SLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNINPSSS 860
>GL16_ARATH (Q9M8X6) Germin-like protein subfamily 1 member 6 precursor| Length = 227 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 419 LFGSNPPIPTPVLTKALRVEAGVV 348 +FGSNP IP VL KA +++ +V Sbjct: 192 VFGSNPSIPQEVLAKAFQLDVKLV 215
>GLMM_CHRVO (Q7NRI6) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 445 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 3/21 (14%) Frame = -3 Query: 401 PIPTP---VLTKALRVEAGVV 348 P+PTP LT+ALR+EAGVV Sbjct: 80 PLPTPGIAYLTRALRLEAGVV 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,171,978 Number of Sequences: 219361 Number of extensions: 959037 Number of successful extensions: 1980 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1946 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1980 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
