ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56h05 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 67.8 bits (164), Expect = 2e-11 Identities = 30/36 (83%), Positives = 34/36 (94%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKLER 390 +VRKVKILKAPKFD+GKLMEVHGDY KED+G KL+R Sbjct: 210 FVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDR 245
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 66.6 bits (161), Expect = 3e-11 Identities = 29/36 (80%), Positives = 34/36 (94%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKLER 390 ++RKVKILKAPKFD+GKLMEVHGDY EDVGVK++R Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDR 245
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 64.7 bits (156), Expect = 1e-10 Identities = 31/36 (86%), Positives = 35/36 (97%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKLER 390 ++RKVKILKAPKFDIGKLMEVHGDY+ EDVGVKL+R Sbjct: 210 FIRKVKILKAPKFDIGKLMEVHGDYS-EDVGVKLDR 244
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 63.9 bits (154), Expect = 2e-10 Identities = 29/36 (80%), Positives = 34/36 (94%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKLER 390 ++RKVKILKAPKFD+GKLMEVHGDYN ED+G KL+R Sbjct: 210 FIRKVKILKAPKFDLGKLMEVHGDYN-EDIGTKLDR 244
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 63.5 bits (153), Expect = 3e-10 Identities = 28/36 (77%), Positives = 33/36 (91%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKLER 390 ++RKVKILKAPKFD+ KLMEVHGDY EDVGVK++R Sbjct: 211 FIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDR 246
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 55.8 bits (133), Expect = 6e-08 Identities = 26/34 (76%), Positives = 31/34 (91%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 ++RKVKILKAPKFD+ KLMEVHGDYN E+VG K+ Sbjct: 208 FIRKVKILKAPKFDLMKLMEVHGDYN-EEVGAKI 240
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 8/44 (18%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD--------YNKEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ + +D G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 253
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 47.0 bits (110), Expect = 3e-05 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 8/44 (18%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD--------YNKEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ +D G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 253
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 46.2 bits (108), Expect = 5e-05 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD------YNKEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVER 251
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 46.2 bits (108), Expect = 5e-05 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD------YNKEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 251
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 45.8 bits (107), Expect = 6e-05 Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 9/45 (20%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYN---------KEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ + D G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVER 254
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 45.8 bits (107), Expect = 6e-05 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYN------KEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 251
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 45.8 bits (107), Expect = 6e-05 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYN------KEDVGVKLER 390 YVRKVK+LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 210 YVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVER 251
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 251
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 45.4 bits (106), Expect = 8e-05 Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ + ++ G K+ER Sbjct: 207 FVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 248
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 251
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 6/42 (14%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNK------EDVGVKLER 390 +VRKVK+LK PKF++GKLME+HG+ ++ G K+ER Sbjct: 210 FVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 251
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/34 (55%), Positives = 27/34 (79%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 +VRKVK+LK PKFD+G LM +HG+ + E+ G K+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKV 243
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/34 (55%), Positives = 27/34 (79%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 +VRKVK+LK PKFD+G LM +HG+ + E+ G K+ Sbjct: 210 HVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKV 243
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 43.5 bits (101), Expect = 3e-04 Identities = 16/24 (66%), Positives = 22/24 (91%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD 426 Y+RKVK+LK P+FD+ KL+E+HGD Sbjct: 213 YIRKVKVLKKPRFDVSKLLELHGD 236
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 +VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 210 FVRKVKILKAPKHDAQKLLELHGE--SQDVGSKV 241
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 42.4 bits (98), Expect = 7e-04 Identities = 16/24 (66%), Positives = 21/24 (87%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD 426 Y+RKVK+LK P+FD+ LME+HGD Sbjct: 213 YIRKVKVLKKPRFDLSSLMELHGD 236
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 42.4 bits (98), Expect = 7e-04 Identities = 21/33 (63%), Positives = 26/33 (78%) Frame = -1 Query: 494 VRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 211 VRKVKILKAPKHDAQKLLELHGE--SQDVGTKV 241
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 42.0 bits (97), Expect = 0.001 Identities = 16/23 (69%), Positives = 21/23 (91%) Frame = -1 Query: 494 VRKVKILKAPKFDIGKLMEVHGD 426 + KVK+LK PKFD+GKLME+HG+ Sbjct: 211 IHKVKVLKKPKFDVGKLMELHGE 233
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/34 (50%), Positives = 26/34 (76%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGDYNKEDVGVKL 396 ++RKVK+LK PKFD G L+ +HG+ + E+ G K+ Sbjct: 210 HIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKV 243
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 39.7 bits (91), Expect = 0.005 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = -1 Query: 497 YVRKVKILKAPKFDIGKLMEVHGD 426 Y+RKVKI+K PK D+G+L ++HGD Sbjct: 208 YIRKVKIIKRPKVDLGRLHDLHGD 231
>DXR_PROMM (Q7V6J8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 412 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 267 NQVNVVHNLESIAHTSYESRH*TSL--FSWSCNLNPCLICLSWPLQLHT 407 NQ+ +V + +SI H+ E + L W P L CLSWP +L T Sbjct: 247 NQIEIVIHPQSIIHSMIELADSSVLGQLGWPDMKLPILYCLSWPERLET 295
>SUHW_DROVI (Q08876) Protein suppressor of hairy wing| Length = 899 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/24 (62%), Positives = 15/24 (62%) Frame = +3 Query: 309 TSYESRH*TSLFSWSCNLNPCLIC 380 TSYE RH SWSCN PC IC Sbjct: 301 TSYE-RHIFITHSWSCNDYPCSIC 323
>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 576 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 336 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 464 S+ SW LNP +ICL + L++ T + ++ + + L N+ L Sbjct: 435 SMLSWLMFLNPSMICLPFDLKMLTLFVCILGGLIGYLLSNVSL 477
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 336 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 464 S+ SW LNP +ICL ++L T + +V + + + ++KL Sbjct: 439 SMLSWLMFLNPAMICLPLEMKLLTLFVCIVGGLMGYLISDVKL 481
>RP5M_SHIFL (P0AFX3) Probable sigma(54) modulation protein (ORF3) (ORF95)| Length = 95 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 76 KLNQVYVIHNLESIAHTSYESRHCN 150 ++NQVYV+ +E + HTS + H N Sbjct: 33 RINQVYVVLKVEKVTHTSDATLHVN 57
>RP5M_ECOLI (P0AFX0) Probable sigma(54) modulation protein (ORF3) (ORF95)| Length = 95 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 76 KLNQVYVIHNLESIAHTSYESRHCN 150 ++NQVYV+ +E + HTS + H N Sbjct: 33 RINQVYVVLKVEKVTHTSDATLHVN 57
>RP5M_ECOL6 (P0AFX1) Probable sigma(54) modulation protein (ORF3) (ORF95)| Length = 95 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 76 KLNQVYVIHNLESIAHTSYESRHCN 150 ++NQVYV+ +E + HTS + H N Sbjct: 33 RINQVYVVLKVEKVTHTSDATLHVN 57
>RP5M_ECO57 (P0AFX2) Probable sigma(54) modulation protein (ORF3) (ORF95)| Length = 95 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +1 Query: 76 KLNQVYVIHNLESIAHTSYESRHCN 150 ++NQVYV+ +E + HTS + H N Sbjct: 33 RINQVYVVLKVEKVTHTSDATLHVN 57
>TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily member 12A| precursor (Fibroblast growth factor-inducible immediate-early response protein 14) (FGF-inducible 14) (Fibroblast growth factor-regulated protein 2) (Tweak-receptor) (TweakR) Length = 129 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 345 SWSCNLNPCLICLSWPLQLHTDILL 419 SWS +L+ C+ C S P + H+D L Sbjct: 41 SWSADLDKCMDCASCPARPHSDFCL 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,233,262 Number of Sequences: 219361 Number of extensions: 869982 Number of successful extensions: 1894 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 1693 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1893 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
