ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464995.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
2ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group... 101 2e-18
3dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
5gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal p... 101 2e-18
6gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, part... 74 5e-10
7gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete s... 70 8e-09
8gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete seq... 70 8e-09
9dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds 70 8e-09
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
11dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
12dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
13gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence 66 1e-07
14gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal prot... 58 3e-05
15emb|AJ515028.1|CAR515028 Cicer arietinum mRNA for ribosomal prot... 58 3e-05
16gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRN... 58 3e-05
17gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds 56 1e-04
18gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, par... 54 4e-04
19ref|XM_677047.1| Aspergillus nidulans FGSC A4 hypothetical prote... 52 0.002
20gb|AF093109.1| Tortula ruralis ribosomal protein S3 (rps3) mRNA,... 52 0.002
21gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome... 44 0.43
22ref|NM_119633.2| Arabidopsis thaliana structural constituent of ... 42 1.7
23gb|BT012853.1| Lycopersicon esculentum clone 113933F, mRNA sequence 42 1.7
24gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, com... 42 1.7
25gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, c... 42 1.7
26gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ri... 42 1.7
27gb|AC158670.5| Mus musculus 6 BAC RP23-82N21 (Roswell Park Cance... 42 1.7
28emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Co... 42 1.7
29emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-spe... 42 1.7
30gb|DQ268856.1| Solanum tuberosum clone 174A02 cyc07-like protein... 42 1.7
31gb|DQ268849.1| Solanum tuberosum clone 155F06 cyc07-like protein... 42 1.7
32gb|DQ252485.1| Solanum tuberosum clone 048H05 cyc07-like mRNA, c... 42 1.7
33gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, com... 40 6.7
34gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome... 40 6.7
35gb|AC149774.2| Bos taurus BAC CH240-10G15 (Children's Hospital ... 40 6.7
36ref|XM_420443.1| PREDICTED: Gallus gallus similar to 40S ribosom... 40 6.7
37gb|AC134908.5| Mus musculus BAC clone RP23-377L13 from chromosom... 40 6.7
38gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome... 40 6.7
39gb|AC121816.3| Mus musculus BAC clone RP23-458H21 from chromosom... 40 6.7
40gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete... 40 6.7
41gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, comple... 40 6.7
42emb|AL157831.29| Human DNA sequence from clone RP11-108B14 on ch... 40 6.7
43emb|AL049844.7|HSJ468K18 Human DNA sequence from clone RP3-468K1... 40 6.7
44emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; se... 40 6.7
45emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chrom... 40 6.7
46gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell ... 40 6.7
47emb|CR338738.2| Gallus gallus finished cDNA, clone ChEST52d12 40 6.7
48gb|AC091529.1|AC091529 Homo sapiens chromosome 17 clone 1005, co... 40 6.7
49gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355... 40 6.7
50gb|AC124248.6| Homo sapiens chromosome 15, clone CTD-3094K11, co... 40 6.7
51gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, comp... 40 6.7
52dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds 40 6.7
53dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
54dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
55dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
56gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.5... 40 6.7
57gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome 40 6.7
58gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 ... 40 6.7
59gb|AF042107.1|AF042107 Eimeria tenella ribosomal protein S3a mRN... 40 6.7
60gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 1... 40 6.7
61gb|AC005800.1|AC005800 Homo sapiens Chromosome 15q26.1 PAC clone... 40 6.7
62emb|CR974568.14| Mouse DNA sequence from clone RP23-39N20 on chr... 40 6.7
63gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromoso... 40 6.7
64gb|AC147186.3| Mus musculus BAC clone RP24-112I5 from 3, complet... 40 6.7
65gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal prot... 40 6.7
66gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein... 40 6.7
67gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA... 40 6.7
68gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, c... 40 6.7 
>ref|XM_464995.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1063

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/113 (86%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 381 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 440
           |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| ||||||||
Sbjct: 779 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 723

                                                                
Query: 441 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 722 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 670
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>ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_D03.49
           mRNA
          Length = 1171

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/113 (86%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 381 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 440
           |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| ||||||||
Sbjct: 815 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 759

                                                                
Query: 441 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 758 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 706
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>dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M05, full
           insert sequence
          Length = 1063

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/113 (86%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 381 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 440
           |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| ||||||||
Sbjct: 779 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 723

                                                                
Query: 441 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 722 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 670
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>dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C03, full
           insert sequence
          Length = 1171

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/113 (86%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 381 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 440
           |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| ||||||||
Sbjct: 815 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 759

                                                                
Query: 441 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 758 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 706
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>gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal protein (RSPSP94) mRNA,
           complete cds
          Length = 1027

 Score =  101 bits (51), Expect = 2e-18
 Identities = 98/113 (86%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 381 ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctc 440
           |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| ||||||||
Sbjct: 776 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacctc 720

                                                                
Query: 441 catcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 719 catcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 667
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>gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, partial cds
          Length = 879

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 87/103 (84%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                       
Query: 380 cctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 439
           |||||||||||||||||| ||||||||| ||||| ||   ||   |||||||||| ||||
Sbjct: 673 cctcagctggcctctccatcttcacaccaacatcttcagagt---agtcaccatgaacct 617

                                                      
Query: 440 ccatcaacttcccaatatcaaacttcggagctttaaggatctt 482
           |||||||||| |||| |||||| || |||||||| | ||||||
Sbjct: 616 ccatcaactttccaagatcaaatttgggagctttcaagatctt 574
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>gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete sequence
          Length = 145314

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 435   tacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaac 485
             |||||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 49266 tacctccatcaacttcccaagatcaaatttgggagctttcaggatcttaac 49216
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>gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete sequence
          Length = 108644

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                
Query: 435   tacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaac 485
             |||||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 41645 tacctccatcaacttcccaagatcaaatttgggagctttcaggatcttaac 41695
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>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds
          Length = 1050

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 423 gtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctt 482
           |||||||||||| ||||||||||| || ||||||||||| || || ||||| ||||||||
Sbjct: 726 gtagtcaccatgaacctccatcaatttgccaatatcaaatttaggtgctttcaggatctt 667

                      
Query: 483 aaccttgcgga 493
            || |||||||
Sbjct: 666 gactttgcgga 656
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 436      acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
                ||||||||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 10823054 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 10823111



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 50/59 (84%), Gaps = 3/59 (5%)
 Strand = Plus / Plus

                                                                           
Query: 381      ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 439
                |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| |||||||
Sbjct: 10822097 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 10822152
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1756_H07
          Length = 217205

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 436   acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
             ||||||||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 29253 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 29310



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 50/59 (84%), Gaps = 3/59 (5%)
 Strand = Plus / Plus

                                                                        
Query: 381   ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 439
             |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| |||||||
Sbjct: 28296 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 28351
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_D03
          Length = 169378

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                        
Query: 436    acctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcgga 493
              ||||||||||||||||||| |||||||||||| || || | |||||| ||||||||||
Sbjct: 162535 acctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcgga 162592



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 50/59 (84%), Gaps = 3/59 (5%)
 Strand = Plus / Plus

                                                                         
Query: 381    ctcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacct 439
              |||||| ||||| |||| ||||| ||||||||| |||||||   ||||||| |||||||
Sbjct: 161578 ctcagcaggcctgtccagcttcataccgacatcttccttgt---agtcaccgtgtacct 161633
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>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence
          Length = 1229

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 421 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 480
           |||||||| ||||| ||||||||||||||||| | ||||||||| || || || || |||
Sbjct: 313 ttgtagtcgccatgaacctccatcaacttcccgagatcaaacttgggggccttgagtatc 372

                        
Query: 481 ttaaccttgcgga 493
           || ||||||||||
Sbjct: 373 ttcaccttgcgga 385
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>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA,
           partial cds
          Length = 462

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 421 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 480
           ||||| || ||||| |||||||| |  || |||| ||||||||| ||||| || ||||||
Sbjct: 137 ttgtaatctccatgaacctccatgagttttccaagatcaaactttggagccttgaggatc 78

                        
Query: 481 ttaaccttgcgga 493
           |||||||||||||
Sbjct: 77  ttaaccttgcgga 65
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>emb|AJ515028.1|CAR515028 Cicer arietinum mRNA for ribosomal protein S3a (rs3a gene)
          Length = 1026

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 423 gtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctt 482
           |||||||||||| ||||||||||  || |||| ||||||||| |||| ||| | ||||||
Sbjct: 755 gtagtcaccatgaacctccatcagttttccaagatcaaacttgggagatttcaagatctt 696

                    
Query: 483 aaccttgcg 491
           ||| |||||
Sbjct: 695 aactttgcg 687
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>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds
          Length = 382

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 421 ttgtagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatc 480
           |||||||||||||| |||||||| | |||||| | ||| ||||| || || || | ||||
Sbjct: 171 ttgtagtcaccatgcacctccatgagcttccccagatcgaacttgggtgccttcaagatc 112

                            
Query: 481 ttaaccttgcggacata 497
           || ||||||||||||||
Sbjct: 111 ttcaccttgcggacata 95
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>gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds
          Length = 786

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||||| ||| ||||||||||| || || || || |||||||| 
Sbjct: 704 tagtcaccatgaacctccatcagcttgccaatatcaaattttggggccttgaggatcttc 645

                   
Query: 484 accttgcg 491
           || |||||
Sbjct: 644 actttgcg 637
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>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds
          Length = 342

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 92/113 (81%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 441
           ||||| ||||| || | ||||||||| |||||||||||||   ||||||| || ||||||
Sbjct: 293 tcagcaggcctgtcaagcttcacaccaacatcctccttgt---agtcaccgtgaacctcc 237

                                                                
Query: 442 atcaacttcccaatatcaaacttcggagctttaaggatcttaaccttgcggac 494
           || | |||||| |  || ||||| || || || |||||||| |||||||||||
Sbjct: 236 atgagcttccccaggtcgaacttgggggccttcaggatcttcaccttgcggac 184
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>ref|XM_677047.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8870.2), mRNA
          Length = 771

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 456 atcaaacttcggagctttaaggatcttaaccttgcgga 493
           |||||||||||||| |||||||| ||| ||||||||||
Sbjct: 672 atcaaacttcggagatttaaggagcttgaccttgcgga 635
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>gb|AF093109.1| Tortula ruralis ribosomal protein S3 (rps3) mRNA, complete cds
          Length = 899

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 413 cctccttgttgtagtcaccatgtacctccatcaacttc 450
           |||||| ||||||||| ||||| |||||||||||||||
Sbjct: 730 cctcctcgttgtagtctccatgaacctccatcaacttc 693
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>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence
          Length = 206353

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 259    caaaactgaatcaagtcaacgt 280
              ||||||||||||||||||||||
Sbjct: 141936 caaaactgaatcaagtcaacgt 141915
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>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670
           mRNA, complete cds
          Length = 1093

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 441
           ||||||||||| || | ||||||||| ||||||||     |||| || ||||| ||||||
Sbjct: 824 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 765

                                                    
Query: 442 atcaacttcccaatatcaaacttcggagctttaaggatctt 482
           || | ||| ||||  |||||||| ||||| || ||||||||
Sbjct: 764 atgagctttccaaggtcaaacttgggagcctttaggatctt 724
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>gb|BT012853.1| Lycopersicon esculentum clone 113933F, mRNA sequence
          Length = 1053

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 427 tcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaacc 486
           ||||| || |||||||||||| ||||||  ||||| || ||||| || | |||||| |||
Sbjct: 772 tcaccgtgaacctccatcaacctcccaaggtcaaatttaggagccttcaagatcttgacc 713

                
Query: 487 ttgcg 491
           |||||
Sbjct: 712 ttgcg 708
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>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence
          Length = 194297

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 334   catctctattcagctggagct 354
             |||||||||||||||||||||
Sbjct: 49278 catctctattcagctggagct 49258
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>gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, complete sequence
          Length = 174147

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    catctctattcagctggagct 354
              |||||||||||||||||||||
Sbjct: 111330 catctctattcagctggagct 111310
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>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein
           (At4g34670; T4L20.250) mRNA, complete cds
          Length = 1094

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 441
           ||||||||||| || | ||||||||| ||||||||     |||| || ||||| ||||||
Sbjct: 824 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 765

                                                    
Query: 442 atcaacttcccaatatcaaacttcggagctttaaggatctt 482
           || | ||| ||||  |||||||| ||||| || ||||||||
Sbjct: 764 atgagctttccaaggtcaaacttgggagcctttaggatctt 724
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>gb|AC158670.5| Mus musculus 6 BAC RP23-82N21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 227520

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 336   tctctattcagctggagctgc 356
             |||||||||||||||||||||
Sbjct: 96534 tctctattcagctggagctgc 96554
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>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB21ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 836

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 441
           ||||||||||| || | ||||||||| ||||||||     |||| || ||||| ||||||
Sbjct: 653 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 594

                                                    
Query: 442 atcaacttcccaatatcaaacttcggagctttaaggatctt 482
           || | ||| ||||  |||||||| ||||| || ||||||||
Sbjct: 593 atgagctttccaaggtcaaacttgggagcctttaggatctt 553
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>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein
          Length = 906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                       
Query: 382 tcagctggcctctccaacttcacaccgacatcctccttgttgtagtcaccatgtacctcc 441
           ||||||||||| || | ||||||||| ||||||||     |||| || ||||| ||||||
Sbjct: 746 tcagctggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctcc 687

                                                    
Query: 442 atcaacttcccaatatcaaacttcggagctttaaggatctt 482
           || | ||| ||||  |||||||| ||||| || ||||||||
Sbjct: 686 atgagctttccaaggtcaaacttgggagcctttaggatctt 646
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>gb|DQ268856.1| Solanum tuberosum clone 174A02 cyc07-like protein mRNA, complete
           cds
          Length = 1045

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||||| ||| ||||  ||||| || || || || |||||||| 
Sbjct: 777 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 718

                
Query: 484 acctt 488
           |||||
Sbjct: 717 acctt 713



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 382 tcagctggcctctccaacttcacaccgacatc 413
           ||||||||||  |||||||||||||| |||||
Sbjct: 816 tcagctggccgatccaacttcacaccaacatc 785
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>gb|DQ268849.1| Solanum tuberosum clone 155F06 cyc07-like protein mRNA, complete
           cds
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||||| ||| ||||  ||||| || || || || |||||||| 
Sbjct: 761 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 702

                
Query: 484 acctt 488
           |||||
Sbjct: 701 acctt 697



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 382 tcagctggcctctccaacttcacaccgacatc 413
           ||||||||||  |||||||||||||| |||||
Sbjct: 800 tcagctggccgatccaacttcacaccaacatc 769
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>gb|DQ252485.1| Solanum tuberosum clone 048H05 cyc07-like mRNA, complete cds
          Length = 998

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||||| ||| ||||  ||||| || || || || |||||||| 
Sbjct: 737 tagtcaccatgaacctccatcagcttgccaaggtcaaatttaggggccttgaggatcttg 678

                
Query: 484 acctt 488
           |||||
Sbjct: 677 acctt 673



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 382 tcagctggcctctccaacttcacaccgacatc 413
           ||||||||||  |||||||||||||| |||||
Sbjct: 776 tcagctggccgatccaacttcacaccaacatc 745
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>gb|AC118696.14| Mus musculus chromosome 3, clone RP24-62O16, complete sequence
          Length = 190616

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    atcagctccttgatttgctc 218
              ||||||||||||||||||||
Sbjct: 150593 atcagctccttgatttgctc 150612
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>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence
          Length = 245594

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 363   aacccctgcctcatctgcctcagc 386
             |||||||||||| |||||||||||
Sbjct: 12940 aacccctgcctcctctgcctcagc 12963
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>gb|AC149774.2| Bos taurus  BAC CH240-10G15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 186916

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aagcatagcacacacatctt 130
             ||||||||||||||||||||
Sbjct: 74467 aagcatagcacacacatctt 74486



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   aagcatagcacacacatctt 315
             ||||||||||||||||||||
Sbjct: 74467 aagcatagcacacacatctt 74486
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>ref|XM_420443.1| PREDICTED: Gallus gallus similar to 40S ribosomal protein S3a (V-fos
            transformation effector protein) (LOC422477), mRNA
          Length = 1423

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 478  atcttaaccttgcggacata 497
            ||||||||||||||||||||
Sbjct: 1313 atcttaaccttgcggacata 1294
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>gb|AC134908.5| Mus musculus BAC clone RP23-377L13 from chromosome 17, complete
             sequence
          Length = 189458

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 363   aacccctgcctcatctgcctcagc 386
             |||||||||||| |||||||||||
Sbjct: 60705 aacccctgcctcctctgcctcagc 60682
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>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence
          Length = 166292

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 363    aacccctgcctcatctgcctcagc 386
              |||||||||||| |||||||||||
Sbjct: 119690 aacccctgcctcctctgcctcagc 119713
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>gb|AC121816.3| Mus musculus BAC clone RP23-458H21 from chromosome 3, complete
            sequence
          Length = 173593

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  tctctattcagctgcagctg 171
            ||||||||||||||||||||
Sbjct: 3441 tctctattcagctgcagctg 3422
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>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence
          Length = 151183

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   gctggagctgcaacctcaac 365
             ||||||||||||||||||||
Sbjct: 93916 gctggagctgcaacctcaac 93935
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>gb|AC079231.6| Homo sapiens BAC clone RP11-348A21 from 7, complete sequence
          Length = 87047

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   atcaagacactgaacatctctatt 343
             ||||||||||||||||| ||||||
Sbjct: 49940 atcaagacactgaacatttctatt 49963
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>emb|AL157831.29| Human DNA sequence from clone RP11-108B14 on chromosome 10 Contains a
              ribosomal protein L29 (RPL29)(HIP,HUMRPL29) pseudogene, a
              CGI-45 protein (CGI-45) pseudogene, a novel pseudogene, a
              pseudogene similar to part of PSME2
              (PA28B,REGbeta,PA28beta) (proteasome (prosome, macropain)
              activator subunit 2 (PA28 beta)) and a CpG island, complete
              sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ctgcagctgcaacctcaacc 182
              ||||||||||||||||||||
Sbjct: 162510 ctgcagctgcaacctcaacc 162491
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>emb|AL049844.7|HSJ468K18 Human DNA sequence from clone RP3-468K18 on chromosome 6q24.1-24.3
              Contains part of the gene for a novel protein (contains
              KIAA0680), the gene for a novel protein (similar to
              nucleolin) (contains FLJ14909), the gene for a novel
              protein similar to a  hypothetical mouse protein, and part
              of the PLAGL1 gene for pleiomorphic adenoma gene-like 1
              (PLAG-like 1, LOT1, ZAC, ZAC tumor suppressor). Contains a
              CpG island, complete sequence
          Length = 137387

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     aatagcaaaagcaggcatca 75
              ||||||||||||||||||||
Sbjct: 110514 aatagcaaaagcaggcatca 110495



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    aatagcaaaagcaggcatca 260
              ||||||||||||||||||||
Sbjct: 110514 aatagcaaaagcaggcatca 110495
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>emb|BX251412.1| Tropheryma whipplei TW08/27, complete genome; segment 3/3
          Length = 302938

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   gataatagcaaaagcaggca 257
             ||||||||||||||||||||
Sbjct: 98811 gataatagcaaaagcaggca 98830



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gataatagcaaaagcaggca 72
             ||||||||||||||||||||
Sbjct: 98811 gataatagcaaaagcaggca 98830
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>emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, the gene for ileal
              fatty acid binding protein 6 (gastrotropin) (Fabp6), two
              novel genes, the gene for a novel protein (1810033K05Rik),
              a mitochondrial ribosomal protein 63 (Mrp63) pseudogene,
              the gene for step II splicing factor SLU7 (Slu7-pending),
              the Pttg1 gene for pituitary tumor-transforming 1 and a CpG
              island, complete sequence
          Length = 232609

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    cccctgcctcatctgcctca 384
              ||||||||||||||||||||
Sbjct: 131772 cccctgcctcatctgcctca 131791
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>gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172372

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 289   acttggaaagcatagcacacacat 312
             ||||||||| ||||||||||||||
Sbjct: 52191 acttggaaaacatagcacacacat 52214



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   acttggaaagcatagcacacacat 127
             ||||||||| ||||||||||||||
Sbjct: 52191 acttggaaaacatagcacacacat 52214
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>emb|CR338738.2| Gallus gallus finished cDNA, clone ChEST52d12
          Length = 758

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 478 atcttaaccttgcggacata 497
           ||||||||||||||||||||
Sbjct: 223 atcttaaccttgcggacata 242
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>gb|AC091529.1|AC091529 Homo sapiens chromosome 17 clone 1005, complete sequence
          Length = 157463

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   atagcaaaagcaggcatcaa 261
             ||||||||||||||||||||
Sbjct: 40063 atagcaaaagcaggcatcaa 40082



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    atagcaaaagcaggcatcaa 76
             ||||||||||||||||||||
Sbjct: 40063 atagcaaaagcaggcatcaa 40082
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>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete
             sequence
          Length = 173386

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   catctgcctcagctggcctc 393
             ||||||||||||||||||||
Sbjct: 92125 catctgcctcagctggcctc 92144
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>gb|AC124248.6| Homo sapiens chromosome 15, clone CTD-3094K11, complete sequence
          Length = 142201

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 365   cccctgcctcatctgcctcagctggcct 392
             |||||||||||||| ||||| |||||||
Sbjct: 86067 cccctgcctcatcttcctcacctggcct 86040
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>gb|AC129916.6| Homo sapiens chromosome 17, clone RP11-2L19, complete sequence
          Length = 167265

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    atagcaaaagcaggcatcaa 76
             ||||||||||||||||||||
Sbjct: 42788 atagcaaaagcaggcatcaa 42769



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   atagcaaaagcaggcatcaa 261
             ||||||||||||||||||||
Sbjct: 42788 atagcaaaagcaggcatcaa 42769
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>dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds
          Length = 1065

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||| | |||||| |  ||||| ||||| || || || ||||| 
Sbjct: 799 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 740

                       
Query: 484 accttgcggaca 495
           || |||||||||
Sbjct: 739 actttgcggaca 728
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>dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C03, full
           insert sequence
          Length = 942

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||| | |||||| |  ||||| ||||| || || || ||||| 
Sbjct: 685 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 626

                       
Query: 484 accttgcggaca 495
           || |||||||||
Sbjct: 625 actttgcggaca 614
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>dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D02, full
           insert sequence
          Length = 1032

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||| | |||||| |  ||||| ||||| || || || ||||| 
Sbjct: 775 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 716

                       
Query: 484 accttgcggaca 495
           || |||||||||
Sbjct: 715 actttgcggaca 704
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>dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013H23, full
           insert sequence
          Length = 1097

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||||||||| |||||||| | |||||| |  ||||| ||||| || || || ||||| 
Sbjct: 776 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 717

                       
Query: 484 accttgcggaca 495
           || |||||||||
Sbjct: 716 actttgcggaca 705
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>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence
          Length = 286758

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   atagcaaaagcaggcatcaa 76
            ||||||||||||||||||||
Sbjct: 2983 atagcaaaagcaggcatcaa 3002



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  atagcaaaagcaggcatcaa 261
            ||||||||||||||||||||
Sbjct: 2983 atagcaaaagcaggcatcaa 3002
to top
>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    gataatagcaaaagcaggca 257
              ||||||||||||||||||||
Sbjct: 723229 gataatagcaaaagcaggca 723248



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gataatagcaaaagcaggca 72
              ||||||||||||||||||||
Sbjct: 723229 gataatagcaaaagcaggca 723248
to top
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete
              sequence
          Length = 301691

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    acttggaaagcatagcacacacat 127
              ||||||||| ||||||||||||||
Sbjct: 239128 acttggaaaacatagcacacacat 239151



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 289    acttggaaagcatagcacacacat 312
              ||||||||| ||||||||||||||
Sbjct: 239128 acttggaaaacatagcacacacat 239151
to top
>gb|AF042107.1|AF042107 Eimeria tenella ribosomal protein S3a mRNA, complete cds
          Length = 858

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 478 atcttaaccttgcggacata 497
           ||||||||||||||||||||
Sbjct: 656 atcttaaccttgcggacata 637
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>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence
          Length = 207280

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   catctctattcagctgcagctgca 173
             |||||| |||||||||||||||||
Sbjct: 16617 catctccattcagctgcagctgca 16640
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>gb|AC005800.1|AC005800 Homo sapiens Chromosome 15q26.1 PAC clone pDJ427d15, complete sequence
          Length = 100259

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 365   cccctgcctcatctgcctcagctggcct 392
             |||||||||||||| ||||| |||||||
Sbjct: 10916 cccctgcctcatcttcctcacctggcct 10943
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>emb|CR974568.14| Mouse DNA sequence from clone RP23-39N20 on chromosome 12, complete
              sequence
          Length = 251037

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    catctctattcagctgcagctgca 173
              |||||| |||||||||||||||||
Sbjct: 105884 catctccattcagctgcagctgca 105861
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>gb|AC160645.2| Gallus gallus BAC clone CH261-21L11 from chromosome unknown, complete
              sequence
          Length = 223748

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     taatagcaaaagcaggcatc 74
              ||||||||||||||||||||
Sbjct: 111466 taatagcaaaagcaggcatc 111447



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    taatagcaaaagcaggcatc 259
              ||||||||||||||||||||
Sbjct: 111466 taatagcaaaagcaggcatc 111447
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>gb|AC147186.3| Mus musculus BAC clone RP24-112I5 from 3, complete sequence
          Length = 157929

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tctctattcagctgcagctg 171
             ||||||||||||||||||||
Sbjct: 87641 tctctattcagctgcagctg 87622
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>gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal protein S3a-like mRNA,
           complete cds
          Length = 1118

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 382 tcagctggcctctccaacttcacaccgacatc 413
           ||||||||||  |||||||||||||| |||||
Sbjct: 829 tcagctggccgatccaacttcacaccaacatc 798
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>gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein mRNA, complete
           cds
          Length = 1020

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||| ||||| |||||||||||||| |||| ||| || || || || || |||||||| 
Sbjct: 747 tagtcgccatgcacctccatcaacttgccaagatcgaatttaggggccttgaggatcttg 688

                   
Query: 484 accttgcg 491
           || |||||
Sbjct: 687 actttgcg 680
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>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds
          Length = 982

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 430 ccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatcttaaccttg 489
           ||||| ||||||||||| ||||| || |||||||| || || || | |||||| || |||
Sbjct: 767 ccatgaacctccatcaatttcccgatgtcaaacttgggtgccttcaagatcttgactttg 708

               
Query: 490 cgga 493
           ||||
Sbjct: 707 cgga 704
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>gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 424 tagtcaccatgtacctccatcaacttcccaatatcaaacttcggagctttaaggatctta 483
           ||||| ||||| |||||||||||||| |||| ||| || || || || || |||||||| 
Sbjct: 725 tagtcgccatgcacctccatcaacttgccaagatcgaatttaggggccttgaggatcttg 666

                   
Query: 484 accttgcg 491
           || |||||
Sbjct: 665 actttgcg 658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,098,378
Number of Sequences: 3902068
Number of extensions: 5098378
Number of successful extensions: 98752
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 98556
Number of HSP's gapped (non-prelim): 199
length of query: 497
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 475
effective length of database: 17,147,199,772
effective search space: 8144919891700
effective search space used: 8144919891700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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