ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RM32_DROME (Q9V9Z1) 39S ribosomal protein L32, mitochondrial pre... 35 0.17
2ORA_PLAFN (P16405) Octapeptide-repeat antigen (ORA) (Fragment) 33 0.37
3INAD_DROME (Q24008) Inactivation-no-after-potential D protein 30 3.2

>RM32_DROME (Q9V9Z1) 39S ribosomal protein L32, mitochondrial precursor|
          Length = 195

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
 Frame = -1

Query: 474 KRKIGAA--NPGPEDAAELLRMCLQCGIPKTYSHARGMVCPVCNDRPVQAKEPEKKK--- 310
           KRK G    N  P      LR CLQCG    + H  G++CP C  + ++  E  + K   
Sbjct: 73  KRKFGYPEYNWKPLREKRNLRSCLQCG----HDHEMGVLCPFCYQKVLKETELMQSKIQE 128

Query: 309 --GSAVKDKEKVKRMRGQSSHAS 247
             G    DKE +    G+ +  S
Sbjct: 129 TLGLDPVDKEVIVLYEGEKAEQS 151



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>ORA_PLAFN (P16405) Octapeptide-repeat antigen (ORA) (Fragment)|
          Length = 701

 Score = 33.5 bits (75), Expect = 0.37
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 263 NRHMHRGRARLRWLCGNSSTNWCQQDCWCTQSVTVH*VEYNLFA 132
           N   + G+ RL  L GN+STNW   DC C  S     V ++ F+
Sbjct: 24  NEEKNNGKFRLLGLYGNNSTNWLITDCACMISGVTTLVMHSKFS 67



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>INAD_DROME (Q24008) Inactivation-no-after-potential D protein|
          Length = 674

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 11  DFAGNILTNTAYKTDPSTAGNCKYKEQ 91
           D  G I T   Y+ D ++AGNCK  +Q
Sbjct: 192 DMTGRIRTEAGYEIDRASAGNCKLNKQ 218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,472,423
Number of Sequences: 219361
Number of extensions: 1465648
Number of successful extensions: 5457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5455
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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