ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467840.1| Oryza sativa (japonica cultivar-group), mRNA Length = 940 Score = 293 bits (148), Expect = 3e-76 Identities = 259/296 (87%) Strand = Plus / Minus Query: 212 tgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgattgccctctc 271 ||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 750 tgttgccgcagggccatctcagtttcactcttccacgaagcgtgtgatgattgccccctc 691 Query: 272 atcctcttcactttctccttgtccttgacagcagaacccttcttcttctcgggttctttt 331 ||||| || | ||||||||||| ||||| | || || |||||||| || || ||| || Sbjct: 690 atccttttgatcttctccttgtctttgacggtcgatcctttcttcttttctggctctctt 631 Query: 332 gcctgcactggtctatcgttgcaaacagggcataccattcctcgggcgtgtgaataggtc 391 |||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| Sbjct: 630 gcctgctctggtctatcgttgcaaacaggacacaccatacctcgtgcgtgtgaataggtc 571 Query: 392 tttggtataccacattggaggcacattcttagaagctcggcagcatcttctggaccagga 451 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 570 tttggtataccacattggaggcacattcttagaagatcagcagcatcttctggaccagga 511 Query: 452 tttgcagcgcctattttcctctttccatcaacagaacctggagggttgccaccatt 507 ||||| || |||||| | |||||||| ||| |||| ||||||||||| ||||||| Sbjct: 510 tttgccgcacctattattctctttccttcagtagaaactggagggttggcaccatt 455
>dbj|AK067176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097D23, full insert sequence Length = 939 Score = 285 bits (144), Expect = 7e-74 Identities = 258/296 (87%) Strand = Plus / Minus Query: 212 tgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgattgccctctc 271 ||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 749 tgttgccgcagggccatctcagtttcactcttccacgaagcgtgtgatgattgccccctc 690 Query: 272 atcctcttcactttctccttgtccttgacagcagaacccttcttcttctcgggttctttt 331 ||||| || | ||||||||||| ||||| | || || |||||||| || || ||| || Sbjct: 689 atccttttgatcttctccttgtctttgacggtcgatcctttcttcttttctggctctctt 630 Query: 332 gcctgcactggtctatcgttgcaaacagggcataccattcctcgggcgtgtgaataggtc 391 |||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| Sbjct: 629 gcctgctctggtctatcgttgcaaacaggacacaccatacctcgtgcgtgtgaataggtc 570 Query: 392 tttggtataccacattggaggcacattcttagaagctcggcagcatcttctggaccagga 451 |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 569 tttggtatactacattggaggcacattcttagaagatcagcagcatcttctggaccagga 510 Query: 452 tttgcagcgcctattttcctctttccatcaacagaacctggagggttgccaccatt 507 ||||| || |||||| | |||||||| ||| |||| ||||||||||| ||||||| Sbjct: 509 tttgccgcacctattattctctttccttcagtagaaactggagggttggcaccatt 454
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 208 bits (105), Expect = 1e-50 Identities = 183/209 (87%) Strand = Plus / Minus Query: 212 tgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgattgccctctc 271 ||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 31693531 tgttgccgcagggccatctcagtttcactcttccacgaagcgtgtgatgattgccccctc 31693472 Query: 272 atcctcttcactttctccttgtccttgacagcagaacccttcttcttctcgggttctttt 331 ||||| || | ||||||||||| ||||| | || || |||||||| || || ||| || Sbjct: 31693471 atccttttgatcttctccttgtctttgacggtcgatcctttcttcttttctggctctctt 31693412 Query: 332 gcctgcactggtctatcgttgcaaacagggcataccattcctcgggcgtgtgaataggtc 391 |||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| Sbjct: 31693411 gcctgctctggtctatcgttgcaaacaggacacaccatacctcgtgcgtgtgaataggtc 31693352 Query: 392 tttggtataccacattggaggcacattct 420 ||||||||||||||||||||||||||||| Sbjct: 31693351 tttggtataccacattggaggcacattct 31693323 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 419 cttagaagctcggcagcatcttctggaccaggatttgcagcgcctattttcctctttcca 478 |||||||| || |||||||||||||||||||||||||| || |||||| | |||||||| Sbjct: 31693210 cttagaagatcagcagcatcttctggaccaggatttgccgcacctattattctctttcct 31693151 Query: 479 tcaacagaacctggagggttgccaccatt 507 ||| |||| ||||||||||| ||||||| Sbjct: 31693150 tcagtagaaactggagggttggcaccatt 31693122
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 208 bits (105), Expect = 1e-50 Identities = 183/209 (87%) Strand = Plus / Minus Query: 212 tgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgattgccctctc 271 ||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct: 73318 tgttgccgcagggccatctcagtttcactcttccacgaagcgtgtgatgattgccccctc 73259 Query: 272 atcctcttcactttctccttgtccttgacagcagaacccttcttcttctcgggttctttt 331 ||||| || | ||||||||||| ||||| | || || |||||||| || || ||| || Sbjct: 73258 atccttttgatcttctccttgtctttgacggtcgatcctttcttcttttctggctctctt 73199 Query: 332 gcctgcactggtctatcgttgcaaacagggcataccattcctcgggcgtgtgaataggtc 391 |||||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| Sbjct: 73198 gcctgctctggtctatcgttgcaaacaggacacaccatacctcgtgcgtgtgaataggtc 73139 Query: 392 tttggtataccacattggaggcacattct 420 ||||||||||||||||||||||||||||| Sbjct: 73138 tttggtataccacattggaggcacattct 73110 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 419 cttagaagctcggcagcatcttctggaccaggatttgcagcgcctattttcctctttcca 478 |||||||| || |||||||||||||||||||||||||| || |||||| | |||||||| Sbjct: 72997 cttagaagatcagcagcatcttctggaccaggatttgccgcacctattattctctttcct 72938 Query: 479 tcaacagaacctggagggttgccaccatt 507 ||| |||| ||||||||||| ||||||| Sbjct: 72937 tcagtagaaactggagggttggcaccatt 72909
>gb|AY111222.1| Zea mays CL30969_1 mRNA sequence Length = 953 Score = 95.6 bits (48), Expect = 1e-16 Identities = 85/99 (85%) Strand = Plus / Plus Query: 204 agtcgaactgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgatt 263 ||||||| |||||||| ||||||||||| || || |||||||| |||||||||||||||| Sbjct: 215 agtcgaattgttgccgaagagccatctcggtttcactcttccatgatgcatgtgacgatt 274 Query: 264 gccctctcatcctcttcactttctccttgtccttgacag 302 | |||||||||| || ||||||||||| ||||||| Sbjct: 275 gnnnnntcatcctcttgaccttctccttgtctttgacag 313 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 380 tgtgaataggtctttggtataccacattggaggcacattcttagaagctcggcagcatct 439 ||||||||||||||||||| ||||||||| || ||||| |||||||| || || || ||| Sbjct: 391 tgtgaataggtctttggtacaccacattgtagacacatccttagaagatcagctgcgtct 450 Query: 440 tctggaccaggatttgcagcgcctatt 466 ||||| |||||||||||||| |||||| Sbjct: 451 tctggcccaggatttgcagcacctatt 477
>gb|AY110363.1| Zea mays CL13131_1 mRNA sequence Length = 621 Score = 93.7 bits (47), Expect = 6e-16 Identities = 93/110 (84%) Strand = Plus / Plus Query: 380 tgtgaataggtctttggtataccacattggaggcacattcttagaagctcggcagcatct 439 ||||| ||||||||||||| |||||||||||| ||||| || ||||| || || |||||| Sbjct: 418 tgtgagtaggtctttggtacaccacattggagacacatcctcagaagatcagctgcatct 477 Query: 440 tctggaccaggatttgcagcgcctattttcctctttccatcaacagaacc 489 ||||||||||||||||| || |||||| | | |||||||||||||| Sbjct: 478 tctggaccaggatttgcggcacctattattcnnnnnccatcaacagaacc 527 Score = 85.7 bits (43), Expect = 1e-13 Identities = 85/99 (85%) Strand = Plus / Plus Query: 204 agtcgaactgttgccgcagagccatctcagtctcgctcttccacgatgcatgtgacgatt 263 ||||||| ||||| || ||||||||||| || ||||||||||| || ||||| ||||||| Sbjct: 242 agtcgaaatgttgtcgaagagccatctcggtttcgctcttccaggacgcatgcgacgatt 301 Query: 264 gccctctcatcctcttcactttctccttgtccttgacag 302 | || ||||||||||| | ||||||||||| ||||||| Sbjct: 302 ggcccctcatcctcttgatcttctccttgtctttgacag 340
>emb|AJ635177.1| Mangifera indica microsatellite DNA, locus mMiCIR015 Length = 490 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 356 acagggcataccattcctcgggcgtgtgaataggtctttggtataccacattg 408 ||||| || |||||||||||||| | ||| |||||||||||||| |||||||| Sbjct: 213 acaggacacaccattcctcgggcatttgagtaggtctttggtattccacattg 161
>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete sequence Length = 122492 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 461 cctattttcctctttccatcaacagaac 488 ||||||||||||||| |||||||||||| Sbjct: 76415 cctattttcctctttgcatcaacagaac 76388
>gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9f22, complete sequence Length = 120423 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 461 cctattttcctctttccatcaacagaac 488 ||||||||||||||| |||||||||||| Sbjct: 13619 cctattttcctctttgcatcaacagaac 13646
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 462 ctattttcctctttccatcaacagaac 488 |||||||||||||| |||||||||||| Sbjct: 126937 ctattttcctctttgcatcaacagaac 126911
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 462 ctattttcctctttccatcaacagaac 488 |||||||||||||| |||||||||||| Sbjct: 81096 ctattttcctctttgcatcaacagaac 81070
>gb|AC157375.2| Medicago truncatula chromosome 2 BAC clone mth2-55b12, complete sequence Length = 125311 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 462 ctattttcctctttccatcaacagaac 488 |||||||||||||| |||||||||||| Sbjct: 69052 ctattttcctctttgcatcaacagaac 69078
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 265 ccctctcatcctcttcactttctcct 290 |||||||||||||||| ||||||||| Sbjct: 187541 ccctctcatcctcttctctttctcct 187516
>gb|AC024068.16| Mus musculus strain 129S6/SvEvTac clone rp22-86n23 map 1, complete sequence Length = 157066 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 tcctcttcactttctccttgtc 294 |||||||||||||||||||||| Sbjct: 143959 tcctcttcactttctccttgtc 143938
>gb|AC158577.5| Mus musculus chromosome 1, clone RP24-187D4, complete sequence Length = 155742 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 273 tcctcttcactttctccttgtc 294 |||||||||||||||||||||| Sbjct: 103287 tcctcttcactttctccttgtc 103308
>ref|NM_001014337.1| Danio rerio zgc:113176 (zgc:113176), mRNA Length = 2019 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 ccctctcatcctcttcactttc 286 |||||||||||||||||||||| Sbjct: 1645 ccctctcatcctcttcactttc 1666
>gb|BC091830.1| Danio rerio zgc:113176, mRNA (cDNA clone MGC:113176 IMAGE:7148213), complete cds Length = 2019 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 ccctctcatcctcttcactttc 286 |||||||||||||||||||||| Sbjct: 1645 ccctctcatcctcttcactttc 1666
>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence Length = 185242 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 265 ccctctcatcctcttcactttctcct 290 |||||||||||||||| ||||||||| Sbjct: 49657 ccctctcatcctcttctctttctcct 49632
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence Length = 159182 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 agggaactgcaaatacaaggaacaa 91 |||||| |||||||||||||||||| Sbjct: 107162 agggaaatgcaaatacaaggaacaa 107186
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 agggaactgcaaatacaaggaacaa 91 |||||| |||||||||||||||||| Sbjct: 123332 agggaaatgcaaatacaaggaacaa 123308
>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence Length = 175123 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 aaagagattgtattctacctagtgt 159 ||||||||||||||||| ||||||| Sbjct: 51352 aaagagattgtattctatctagtgt 51328
>gb|AC068867.9| Homo sapiens chromosome 15, clone RP11-702M1, complete sequence Length = 179455 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 aaagagattgtattctacctagtgt 159 ||||||||||||||||| ||||||| Sbjct: 114573 aaagagattgtattctatctagtgt 114549
>gb|AC090815.3| Homo sapiens chromosome 15, clone RP11-1078O1, complete sequence Length = 180352 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 aaagagattgtattctacctagtgt 159 ||||||||||||||||| ||||||| Sbjct: 51104 aaagagattgtattctatctagtgt 51128
>gb|AC008545.3|AC008545 Homo sapiens chromosome 5 clone CTC-500L4, complete sequence Length = 90493 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 cttataaaacagacccaagta 62 ||||||||||||||||||||| Sbjct: 44673 cttataaaacagacccaagta 44653
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4 Length = 79046 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 ccttcttcttctcgggttctt 329 ||||||||||||||||||||| Sbjct: 60398 ccttcttcttctcgggttctt 60378
>gb|AC164095.4| Mus musculus BAC clone RP23-355A22 from chromosome 7, complete sequence Length = 184356 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 agcatcttctggaccaggatttgc 456 ||||||||||||||||| |||||| Sbjct: 122532 agcatcttctggaccagtatttgc 122555
>ref|XM_958921.1| Neurospora crassa OR74A hypothetical protein (NCU02058.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acttgaacctgactttgctg 20 |||||||||||||||||||| Sbjct: 509 acttgaacctgactttgctg 490
>ref|XM_329247.1| Neurospora crassa OR74A hypothetical protein (NCU02058.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acttgaacctgactttgctg 20 |||||||||||||||||||| Sbjct: 509 acttgaacctgactttgctg 490
>ref|XM_712021.1| Candida albicans SC5314 hypothetical protein (CaO19_5311), mRNA Length = 2529 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tctcatcctcttcactttct 287 |||||||||||||||||||| Sbjct: 142 tctcatcctcttcactttct 123
>ref|XM_712020.1| Candida albicans SC5314 hypothetical protein (CaO19_5310), mRNA Length = 396 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tctcatcctcttcactttct 287 |||||||||||||||||||| Sbjct: 233 tctcatcctcttcactttct 252
>ref|XM_711942.1| Candida albicans SC5314 hypothetical protein (CaO19_12771), mRNA Length = 2529 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tctcatcctcttcactttct 287 |||||||||||||||||||| Sbjct: 142 tctcatcctcttcactttct 123
>ref|XM_711941.1| Candida albicans SC5314 hypothetical protein (CaO19_12770), mRNA Length = 396 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 tctcatcctcttcactttct 287 |||||||||||||||||||| Sbjct: 233 tctcatcctcttcactttct 252
>gb|AC161762.4| Mus musculus BAC clone RP23-371K18 from chromosome 7, complete sequence Length = 207870 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 agcatcttctggaccaggatttgc 456 ||||||||||||||||| |||||| Sbjct: 90371 agcatcttctggaccagtatttgc 90348
>emb|AL157384.8| Human DNA sequence from clone RP11-173G21 on chromosome 9q22.1-22.33 Contains the KIAA0431 pseudogene, the 5' end of the FANCC gene for fanconi anemia complementation group C protein and a CpG island, complete sequence Length = 158143 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 actttctccttgtccttgac 300 |||||||||||||||||||| Sbjct: 53633 actttctccttgtccttgac 53652
>emb|AL049650.8|HSJ734P14 Human DNA sequence from clone RP4-734P14 on chromosome 20 Contains the 3' end of the ZNF343 gene for zinc finger protein 343, the SNRPB gene for small nuclear ribonucleoprotein polypeptides B and B1 (B'), the 3' end of the TGM6 gene for transglutaminase 6 and a CpG island, complete sequence Length = 90220 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccctctcatcctcttcactt 284 |||||||||||||||||||| Sbjct: 35736 ccctctcatcctcttcactt 35717
>emb|BX119319.7| Zebrafish DNA sequence from clone CH211-195K14 in linkage group 5, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 tctttccatcaacagaacctggag 494 |||||||||||||||||| ||||| Sbjct: 44713 tctttccatcaacagaacttggag 44690
>gb|AF486251.1| Erpobdellid sp. IRT-2002 myosin heavy chain type II mRNA, partial cds Length = 607 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 agcagaacccttcttcttct 320 |||||||||||||||||||| Sbjct: 471 agcagaacccttcttcttct 452
>gb|AC102264.26| Mus musculus chromosome 7, clone RP24-230F10, complete sequence Length = 175968 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 agcatcttctggaccaggatttgc 456 ||||||||||||||||| |||||| Sbjct: 120844 agcatcttctggaccagtatttgc 120821
>gb|AC107979.7| Homo sapiens chromosome 15, clone CTD-3049M7, complete sequence Length = 148290 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 caaatacaaggaacaaatcttgaa 99 |||| ||||||||||||||||||| Sbjct: 79789 caaagacaaggaacaaatcttgaa 79766
>gb|AC103996.7| Homo sapiens chromosome 15, clone RP11-76E17, complete sequence Length = 165649 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 caaatacaaggaacaaatcttgaa 99 |||| ||||||||||||||||||| Sbjct: 3400 caaagacaaggaacaaatcttgaa 3377
>gb|AC090762.9| Homo sapiens chromosome 15, clone RP11-387E8, complete sequence Length = 192826 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 caaatacaaggaacaaatcttgaa 99 |||| ||||||||||||||||||| Sbjct: 186236 caaagacaaggaacaaatcttgaa 186213
>emb|AL114629.1|CNS01BSD Botrytis cinerea strain T4 cDNA library Length = 780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 acccttcttcttctcgggtt 326 |||||||||||||||||||| Sbjct: 244 acccttcttcttctcgggtt 225
>gb|AY220878.1| Homo sapiens Fanconi anemia, complementation group C (FANCC) gene, complete cds Length = 221989 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 actttctccttgtccttgac 300 |||||||||||||||||||| Sbjct: 41930 actttctccttgtccttgac 41949
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 tctttccatcaacagaacctggag 494 |||||||||||||||||| ||||| Sbjct: 167656 tctttccatcaacagaacttggag 167633
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 atttgcagcgcctattttcc 470 |||||||||||||||||||| Sbjct: 2373059 atttgcagcgcctattttcc 2373078 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,709,394 Number of Sequences: 3902068 Number of extensions: 5709394 Number of successful extensions: 89473 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89344 Number of HSP's gapped (non-prelim): 129 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
