Clone Information

BLAST Search Result

Clone Name	rbart56g12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	BAP31_MOUSE (Q61335) B-cell receptor-associated protein 31 (BCR-...	47	2e-05
2	BAP31_PONPY (Q5R8H3) B-cell receptor-associated protein 31 (BCR-...	43	4e-04
3	BAP31_HUMAN (P51572) B-cell receptor-associated protein 31 (BCR-...	43	4e-04
4	BAP29_PONPY (Q5R9U7) B-cell receptor-associated protein 29 (BCR-...	40	0.004
5	BAP29_HUMAN (Q9UHQ4) B-cell receptor-associated protein 29 (BCR-...	40	0.004
6	OPTN_XENLA (Q5M7B7) Optineurin	39	0.010
7	TPR_HUMAN (P12270) Nucleoprotein TPR	38	0.017
8	AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A...	37	0.030
9	MEDB_GIALA (Q08014) Median body protein	37	0.039
10	BAP29_MOUSE (Q61334) B-cell receptor-associated protein 29 (BCR-...	37	0.039
11	RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad...	35	0.11
12	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	33	0.33
13	SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like...	33	0.33
14	NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS prot...	33	0.33
15	MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II ...	33	0.43
16	OPTN_MACMU (Q861Q8) Optineurin	33	0.56
17	OPTN_MACFA (Q95KA2) Optineurin	33	0.56
18	PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal prot...	32	0.73
19	LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatas...	32	0.73
20	LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatas...	32	0.73
21	RAD50_DROME (Q9W252) DNA repair protein RAD50 (EC 3.6.-.-)	32	0.73
22	MYS_PODCA (Q05000) Myosin heavy chain (Fragment)	32	0.95
23	OPTN_PIG (Q7YS99) Optineurin	32	0.95
24	HC127_MOUSE (Q68FG0) Hepatocellular carcinoma-associated antigen...	32	0.95
25	HC127_HUMAN (Q9NQZ6) Hepatocellular carcinoma-associated antigen...	32	0.95
26	RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)	32	1.2
27	GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing prote...	32	1.2
28	YAYE_SCHPO (Q10221) Hypothetical protein C4H3.14c in chromosome I	32	1.2
29	MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)	31	1.6
30	STXB4_HUMAN (Q6ZWJ1) Syntaxin-binding protein 4 (Syntaxin 4-inte...	31	1.6
31	CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere prot...	31	2.1
32	ITB6_MOUSE (Q9Z0T9) Integrin beta-6 precursor	30	2.8
33	Y1605_HAEIN (P44272) Hypothetical protein HI1605 precursor	30	2.8
34	NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA p...	30	2.8
35	YDKA_SCHPO (P87117) Hypothetical protein C20G8.10c in chromosome I	30	3.6
36	MSPD2_MOUSE (Q9CWP6) Motile sperm domain-containing protein 2	30	3.6
37	LIPA_CAEEL (Q21049) Liprin-alpha (LAR-interacting protein alpha)...	30	3.6
38	LIPA1_HUMAN (Q13136) Liprin-alpha-1 (Protein tyrosine phosphatas...	30	4.7
39	SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like...	30	4.7
40	MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscl...	30	4.7
41	MYH11_RAT (Q63862) Myosin-11 (Myosin heavy chain, smooth muscle ...	30	4.7
42	ANT1_ONCVO (P21249) Major antigen (Myosin-like antigen)	30	4.7
43	MFP1_LYCES (P93203) MAR binding filament-like protein 1	29	6.2
44	OPTN_MOUSE (Q8K3K8) Optineurin	29	6.2
45	PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)	29	6.2
46	PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediat...	29	8.1
47	SMC_METJA (Q59037) Chromosome partition protein smc homolog	29	8.1
48	OPTN_HUMAN (Q96CV9) Optineurin (Optic neuropathy-inducing protei...	29	8.1
49	GBRA6_RAT (P30191) Gamma-aminobutyric-acid receptor alpha-6 subu...	29	8.1
50	GBRA6_MOUSE (P16305) Gamma-aminobutyric-acid receptor alpha-6 su...	29	8.1

>BAP31_MOUSE (Q61335) B-cell receptor-associated protein 31 (BCR-associated|
           protein Bap31) (p28 Bap31)
          Length = 244

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 39/56 (69%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           +L  +++KLK ++    K++  A+++ LA+QKQSE L  EYDRLLE++  L+  ++
Sbjct: 181 SLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVR 236

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>BAP31_PONPY (Q5R8H3) B-cell receptor-associated protein 31 (BCR-associated|
           protein Bap31)
          Length = 245

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 37/52 (71%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLR 341
           +L  +++KLK ++    +++  A+++ LA++KQSE L  EYDRLLE++  L+
Sbjct: 182 SLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQ 233

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>BAP31_HUMAN (P51572) B-cell receptor-associated protein 31 (BCR-associated|
           protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG
           tumor-associated antigen) (DXS1357E)
          Length = 245

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 37/52 (71%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLR 341
           +L  +++KLK ++    +++  A+++ LA++KQSE L  EYDRLLE++  L+
Sbjct: 182 SLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQ 233

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>BAP29_PONPY (Q5R9U7) B-cell receptor-associated protein 29 (BCR-associated|
           protein Bap29)
          Length = 241

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 18/55 (32%), Positives = 38/55 (69%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           L E+ +KLK ++++ +  +  AQ+  + ++ QSE L  EYD+LL+++  L+++L+
Sbjct: 180 LVEDQQKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQDRLE 234

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>BAP29_HUMAN (Q9UHQ4) B-cell receptor-associated protein 29 (BCR-associated|
           protein Bap29)
          Length = 241

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 18/55 (32%), Positives = 38/55 (69%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           L E+ +KLK ++++ +  +  AQ+  + ++ QSE L  EYD+LL+++  L+++L+
Sbjct: 180 LVEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQDRLE 234

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>OPTN_XENLA (Q5M7B7) Optineurin|
          Length = 532

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLR 341
           +L   +KKL+LQV+ +  E+ + Q+KT A + Q   L + YD+L  + Q LR
Sbjct: 315 SLRYSIKKLELQVESQESEIKLEQNKTEAEKNQLGILQVSYDKLNSEYQELR 366

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>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 37.7 bits (86), Expect = 0.017
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQ---EKTKEVHVAQDKTLAIQKQ----SESLLLEYDRLLEDNQHLRE 338
           +L  E++KL  Q++   EK KE+ +AQD+ +AIQ Q     E L  E   L+  N+ L +
Sbjct: 77  SLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ 136

Query: 337 QLQSID---LRLSNPS*EKNVLK 278
           +L+ +     RL+    E N  K
Sbjct: 137 ELEYLTEDVKRLNEKLKESNTTK 159

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>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring|
            protein 9) (PRKA9) (A-kinase anchor protein 450 kDa)
            (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350)
            (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein)
            (Yotiao protei
          Length = 3911

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = -2

Query: 487  EEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESL--LLEYDRLLEDNQHLREQLQSIDLR 314
            +E++  +L+V++KT EVH+  D   + QK+S  L   LE ++        R++ +  DL+
Sbjct: 3191 KELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLK 3250

Query: 313  LSNPS*EKNVLK*NIIL 263
             S  S ++  L+ N++L
Sbjct: 3251 FSLESQKQRNLQLNLLL 3267

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>MEDB_GIALA (Q08014) Median body protein|
          Length = 857

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEVH----VAQDKTLAIQ--KQSESLLLEYDRLLEDNQHLREQ 335
           TL EE ++L++++ E   +V+    +A DK    +  K+    L+E++ +++DN+ L+ Q
Sbjct: 703 TLVEEKQRLEMRLAELKIKVNNYDQLADDKARLQEQLKEMSDKLIEFEMIMDDNRRLKLQ 762

Query: 334 LQSIDLRLSN 305
           ++ +DL+ +N
Sbjct: 763 VKELDLKTAN 772



 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
 Frame = -2

Query: 490 NEEMKKLKLQVQEKTKEVHVAQDKTL----------AIQKQSESLLLEYDRLLEDNQHLR 341
           NE++ KL  + ++  +E++  ++KT+          A++ + +     +D+LLE  Q +R
Sbjct: 440 NEDIDKLTFEKRQLVEELNDLREKTIKYDQLAREKAALETELKENSYNFDQLLEQKQQMR 499

Query: 340 EQLQSI 323
             L ++
Sbjct: 500 SDLNAL 505

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>BAP29_MOUSE (Q61334) B-cell receptor-associated protein 29 (BCR-associated|
           protein Bap29)
          Length = 240

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 18/55 (32%), Positives = 35/55 (63%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           L E  + LK ++++ +  +  AQ+  + ++ QSE L  EYDRLL+++  L+ +L+
Sbjct: 179 LIESKENLKTELKKASDALLKAQNDVMTMKIQSERLSKEYDRLLKEHSELQNRLE 233

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>RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad50 ATPase|
          Length = 978

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
 Frame = -2

Query: 496 TLNEEMKKLKLQVQEKTKEV------HVAQDKTLAIQKQS-ESLLLEYDRLLEDNQHLRE 338
           +L EEM+KL+ +V+E  KE+       + + + L I+K+  E  L +Y + LED Q  +E
Sbjct: 536 SLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIEKEKLEHKLNKYRKALEDRQKQKE 595

Query: 337 QLQS 326
           + Q+
Sbjct: 596 EAQA 599

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>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQH-LREQLQSIDL 317
            L  E+K L+ +  E  K  + A++    IQK+  +LL E  +++++N+H L++   SI L
Sbjct: 958  LTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQEL-KVIQENEHALQKDALSIKL 1016

Query: 316  RL 311
            +L
Sbjct: 1017 KL 1018

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>SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
            (Fragment)
          Length = 1243

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQH-LREQLQSIDL 317
            L  E+K ++ + +E  K+ + A++    IQK+  +LL E  +++++N+H L++   SI L
Sbjct: 913  LKAELKAIEDKAEEVIKKTNAAEESLPEIQKEHRNLLQEL-KVIQENEHALQKDALSIKL 971

Query: 316  RL 311
            +L
Sbjct: 972  KL 973

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>NGAP_HUMAN (Q9UJF2) Ras GTPase-activating protein nGAP (RAS protein|
            activator-like 1)
          Length = 1139

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = -2

Query: 487  EEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDN-QHLREQLQSIDLRL 311
            +E+ KLK +++  ++ +   + + L  ++Q + LLLEY   LED+ + LR Q +  D ++
Sbjct: 991  QEITKLKERLRVSSRRLEEYERRLLVQEQQMQKLLLEYKARLEDSEERLRRQQEEKDSQM 1050

Query: 310  SN 305
             +
Sbjct: 1051 KS 1052

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>MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 1509

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 16/60 (26%), Positives = 35/60 (58%)
 Frame = -2

Query: 484  EMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSN 305
            E+++LK +V ++T +   AQD+    Q+++ESL  + D +   N+    Q++ +  +L +
Sbjct: 1344 EIEELKKRVAKETSDKQKAQDQKANYQRENESLKADRDSIERRNRDAERQVRDLRAQLDD 1403

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>OPTN_MACMU (Q861Q8) Optineurin|
          Length = 571

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 19/67 (28%), Positives = 38/67 (56%)
 Frame = -2

Query: 478 KKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSNPS 299
           KKL+LQV+    E+ + Q KT   + +   L L +++LL+++ H  + ++ +  R  +  
Sbjct: 353 KKLELQVESMLSEIKMEQAKTEDEKSKLAMLQLTHNKLLQEHNHALKTIEEL-TRKESEK 411

Query: 298 *EKNVLK 278
            ++ VLK
Sbjct: 412 VDRAVLK 418

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>OPTN_MACFA (Q95KA2) Optineurin|
          Length = 571

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 19/67 (28%), Positives = 38/67 (56%)
 Frame = -2

Query: 478 KKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSNPS 299
           KKL+LQV+    E+ + Q KT   + +   L L +++LL+++ H  + ++ +  R  +  
Sbjct: 353 KKLELQVESMLSEIKMEQAKTEDEKSKLAMLQLTHNKLLQEHNHALKTIEEL-TRKESEK 411

Query: 298 *EKNVLK 278
            ++ VLK
Sbjct: 412 VDRAVLK 418

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>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDR------LLEDNQHLREQL 332
            + +E ++L   ++E  +  H A++     +KQ E   LE  R      L E+NQ LREQL
Sbjct: 2678 MEQERQRLVASMEEARRRQHEAEEGVR--RKQEELQQLEQQRRQQEELLAEENQRLREQL 2735

Query: 331  QSID 320
            Q ++
Sbjct: 2736 QLLE 2739

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>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-2)
           (PTPRF-interacting protein alpha-2)
          Length = 1257

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQ-----HLREQLQ 329
           + E M+ L+ Q++EK +E+  A+ +    ++ ++ L    DRLL ++      HL+E++ 
Sbjct: 430 IEERMRHLEGQLEEKNQELQRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMA 489

Query: 328 SIDLRLSNPS*EKNVL 281
           +++        EKNVL
Sbjct: 490 ALE--------EKNVL 497

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>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-2)
           (PTPRF-interacting protein alpha-2)
          Length = 1257

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQ-----HLREQLQ 329
           + E M+ L+ Q++EK +E+  A+ +    ++ ++ L    DRLL ++      HL+E++ 
Sbjct: 430 IEERMRHLEGQLEEKNQELQRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMA 489

Query: 328 SIDLRLSNPS*EKNVL 281
           +++        EKNVL
Sbjct: 490 ALE--------EKNVL 497

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>RAD50_DROME (Q9W252) DNA repair protein RAD50 (EC 3.6.-.-)|
          Length = 1318

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESL--LLEYDRLLEDNQ-HLREQLQSI 323
            L  E  K+  +++ + KE+  AQ+   A+Q+Q ++L  L E    L+D Q HLRE LQS+
Sbjct: 835  LQAEKSKVSKELETERKELESAQN---AVQQQMDALNRLREKKNSLKDRQIHLREGLQSL 891

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>MYS_PODCA (Q05000) Myosin heavy chain (Fragment)|
          Length = 692

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
 Frame = -2

Query: 499 ATLNEEMKKLKLQVQE---KTKEVHVAQDKT-----------LAIQKQSESLLLEYDRLL 362
           + L ++ KK+  Q+ E   K  E+    DK            L ++  SE  + +YD L 
Sbjct: 179 SNLEKKQKKVDQQINEWKLKCDEIQADLDKAQRDARGYSTELLKVRTASEDTIEKYDALK 238

Query: 361 EDNQHLREQLQSIDLRLSN 305
           ++N+ L  +LQS+  +LS+
Sbjct: 239 KENRALSAELQSVTEQLSD 257

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>OPTN_PIG (Q7YS99) Optineurin|
          Length = 574

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = -2

Query: 478 KKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLS 308
           KKL+LQV+    E+ + Q KT   + +  +L L ++RLL++  +  + ++ +  R S
Sbjct: 353 KKLELQVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRES 409

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>HC127_MOUSE (Q68FG0) Hepatocellular carcinoma-associated antigen 127 homolog|
          Length = 224

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 463 QVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRL 311
           ++  K + +   ++KTL ++K    L  E++ L  + +HL+E  Q +DL L
Sbjct: 6   EIMCKLESIKEIRNKTLQMEKIKARLKAEFEALESEERHLKEYKQEMDLLL 56

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>HC127_HUMAN (Q9NQZ6) Hepatocellular carcinoma-associated antigen 127|
          Length = 224

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 463 QVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRL 311
           ++  K + +   ++KTL ++K    L  E++ L  + +HL+E  Q +DL L
Sbjct: 6   EIMCKLESIKEIRNKTLQMEKIKARLKAEFEALESEERHLKEYKQEMDLLL 56

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>RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)|
          Length = 1583

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
 Frame = -2

Query: 499 ATLNEEMKKLKLQVQEKT----KEVHVAQDKTLAIQKQSESLLLEYD-------RLLEDN 353
           A +NEE   L  Q  EK     KE+   Q++++   ++ +SLL +Y+       + LE+ 
Sbjct: 690 AKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEI 749

Query: 352 QHLREQLQSIDLRLSNPS*EKNVLK*NIIL 263
           Q  +E LQS  L + N + +  +   N+++
Sbjct: 750 QSEKEALQSDLLEMKNANEKTRLENQNLLI 779

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>GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing protein 2 (Golgi|
           coiled coil protein GCC185) (CTCL tumor antigen se1-1)
           (CLL-associated antigen KW-11) (NY-REN-53 antigen)
          Length = 1583

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
 Frame = -2

Query: 499 ATLNEEMKKLKLQVQEKT----KEVHVAQDKTLAIQKQSESLLLEYD-------RLLEDN 353
           A +NEE   L  Q  EK     KE+   Q++++   ++ +SLL +Y+       + LE+ 
Sbjct: 690 AKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEI 749

Query: 352 QHLREQLQSIDLRLSNPS*EKNVLK*NIIL 263
           Q  +E LQS  L + N + +  +   N+++
Sbjct: 750 QSEKEALQSDLLEMKNANEKTRLENQNLLI 779

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>YAYE_SCHPO (Q10221) Hypothetical protein C4H3.14c in chromosome I|
          Length = 345

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRL 365
           L EE ++LKL+++    E   A  +T   +KQ E+L  EY+ L
Sbjct: 151 LLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEEL 193

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>MYO5C_HUMAN (Q9NQX4) Myosin-5C (Myosin Vc)|
          Length = 1742

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQD------KTLAIQ-----KQSESLLLEYDRLLEDNQH 347
            LNE+ +K+K +++E + ++H +Q+      K L  Q     K+ E L+ +   + E + H
Sbjct: 1232 LNEQAEKMKGKLEELSNQLHRSQEEEGTQRKALEAQNEIHTKEKEKLIDKIQEMQEASDH 1291

Query: 346  LREQLQS 326
            L++Q ++
Sbjct: 1292 LKKQFET 1298

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>STXB4_HUMAN (Q6ZWJ1) Syntaxin-binding protein 4 (Syntaxin 4-interacting|
           protein) (Synip)
          Length = 553

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/59 (25%), Positives = 34/59 (57%)
 Frame = -2

Query: 487 EEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRL 311
           +EM++LK +  +  KEV+  ++K L   KQ + L  E   + ++ + + E+ +++  R+
Sbjct: 295 DEMERLKCERDDALKEVNTLKEKLLESDKQRKQLTEELQNVKQEAKAVVEETRALRSRI 353

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>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKE-VHVAQDKTLAIQKQSE---SLLLEYDRLLEDNQHLREQLQS 326
            L+E+MK+   +++    E +H  Q     +++++E   +L  +   LL+D  HL+E+LQS
Sbjct: 2076 LSEKMKEKTQELESHQSECLHCIQVAEAEVKEKTELLQTLSSDVSELLKDKTHLQEKLQS 2135

Query: 325  ID 320
            ++
Sbjct: 2136 LE 2137

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>ITB6_MOUSE (Q9Z0T9) Integrin beta-6 precursor|
          Length = 787

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 497 HSE*GDEETEAASTREDQGGPCCSGQDTCY 408
           H E G++     S +E  G P CSG+  CY
Sbjct: 489 HCECGEDMVSTDSCKESPGHPSCSGRGDCY 518

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>Y1605_HAEIN (P44272) Hypothetical protein HI1605 precursor|
          Length = 203

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -2

Query: 487 EEMKKLKLQVQEKTKEVHVA----QDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           EE  KLK QVQE T ++       Q +T+ +Q++++    +   LLE N  L+ +L+
Sbjct: 91  EENPKLKAQVQELTLKLSRLDGDWQQRTVEMQRRTKQAEQQSAVLLEQNSQLKRELE 147

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>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H|
            antigen)
          Length = 2115

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 487  EEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSID 320
            +E ++L+ Q+ E   ++   +      + Q E     YD   + NQ L+EQL+S++
Sbjct: 1584 QEAQRLQAQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQELQEQLRSLE 1639

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>YDKA_SCHPO (P87117) Hypothetical protein C20G8.10c in chromosome I|
          Length = 499

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -2

Query: 499 ATLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSID 320
           A L+ E+ +L  Q+ EK +++    D+T  +QK    L  E +++  + Q     L    
Sbjct: 186 AALDSEIDELMKQINEKEEKIEEISDETDKLQKLLRELDEEKEKVYAEEQEFYNNLNQFQ 245

Query: 319 LR 314
           ++
Sbjct: 246 IK 247

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>MSPD2_MOUSE (Q9CWP6) Motile sperm domain-containing protein 2|
          Length = 518

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 403 KQSESLLLEYDRLLEDNQHLREQLQ 329
           K SE L L+ +RLLE N+ L +QLQ
Sbjct: 465 KTSEDLYLQLNRLLESNRKLEDQLQ 489

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>LIPA_CAEEL (Q21049) Liprin-alpha (LAR-interacting protein alpha) (Synapse|
           defective protein 2)
          Length = 1139

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = -2

Query: 487 EEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQ-----HLREQLQSI 323
           E +++L   +QE + E+  A  +    ++ S+ L    D+LL ++      HL+E++Q++
Sbjct: 404 ERIQRLDRNIQELSAELERAVQRERMNEEHSQRLSSTVDKLLSESNDRLQLHLKERMQAL 463

Query: 322 D 320
           D
Sbjct: 464 D 464

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>LIPA1_HUMAN (Q13136) Liprin-alpha-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein alpha-1)
           (PTPRF-interacting protein alpha-1) (LAR-interacting
           protein 1) (LIP.1)
          Length = 1202

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/63 (20%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQ-----HLREQLQ 329
           + E +++++ Q++EK +E+  A+ +    ++ ++ L    D+LL ++      HL+E++ 
Sbjct: 412 IEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLHLKERMA 471

Query: 328 SID 320
           +++
Sbjct: 472 ALE 474

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>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQH-LREQLQSIDL 317
            L  E+K ++ + +E       A+     IQK+  +LL E  +++++N+H L++   SI L
Sbjct: 956  LKTELKNIEDKAEEVINNTKTAETSLPEIQKEHRNLLQEL-KVIQENEHALQKDALSIKL 1014

Query: 316  RL 311
            +L
Sbjct: 1015 KL 1016

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>MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscle isoform)|
            (SMMHC)
          Length = 1972

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -2

Query: 499  ATLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLE-------YDRLLEDNQHLR 341
            +TLN ++   K ++Q+    + V ++    +QK+ E L  +       YD+L +    L+
Sbjct: 1367 STLNIQLSDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKTKNRLQ 1426

Query: 340  EQLQSIDLRLSN 305
            ++L  + + L N
Sbjct: 1427 QELDDLVVDLDN 1438

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>MYH11_RAT (Q63862) Myosin-11 (Myosin heavy chain, smooth muscle isoform)|
           (SMMHC) (Fragments)
          Length = 1327

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -2

Query: 499 ATLNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESL-------LLEYDRLLEDNQHLR 341
           +TLN ++   K ++Q+    + V ++    +QK+ E L          YD+L +    L+
Sbjct: 722 STLNIQLSDSKKKLQDLASTIEVMEEGKKRLQKEMEGLGQQYEEKAAAYDKLEKTKNRLQ 781

Query: 340 EQLQSIDLRLSN 305
           ++L  + + L N
Sbjct: 782 QELDDLVVDLDN 793

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>ANT1_ONCVO (P21249) Major antigen (Myosin-like antigen)|
          Length = 2022

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
 Frame = -2

Query: 496  TLNEEMKKLKLQVQE-KTKEVHVAQD---------KTLAIQKQSESLLLEYDRLLEDNQH 347
            +LNE+++ L  ++Q+ ++K   + +D         K    + +    + +  R++ DNQ 
Sbjct: 1552 SLNEKVRDLASRLQQTESKNADMKEDNDRLKKDLIKASTNEAELRRTIDQNSRVVSDNQI 1611

Query: 346  LREQLQSIDLRLSNPS*EKNVLK*NIIL 263
            L++QL+S    LSN +  K  L+  +++
Sbjct: 1612 LKDQLESAQNDLSNANNRKQQLENELLV 1639

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>MFP1_LYCES (P93203) MAR binding filament-like protein 1|
          Length = 697

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -2

Query: 493 LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQ 329
           L  E+   K  +++  +E+H   D+ +A+ +  +SL  E   + +  +H R +L+
Sbjct: 486 LAAELTTTKELLKKTNEEMHTMSDELVAVSENRDSLQTELVNVYKKREHTRNELK 540

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>OPTN_MOUSE (Q8K3K8) Optineurin|
          Length = 584

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -2

Query: 478 KKLKLQVQEKTKEVHVAQDKT-------LAIQKQSESLLLEYDRLLEDNQHL-REQLQSI 323
           KKL+LQV+    E+ + Q KT         +Q     LL E+++ L+  + L ++Q + +
Sbjct: 362 KKLELQVESMRSEIKMEQAKTEEEKSRLATLQATHNKLLQEHNKALKTIEELTKQQAEKV 421

Query: 322 DLRLSNPS*EK 290
           D  L     EK
Sbjct: 422 DKMLLQELSEK 432

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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQ---------KQSESLLLEYDR------LLE 359
            L EE ++ + Q++++ +E+  + ++    Q         KQ E   LE  R      L E
Sbjct: 2670 LQEEQQRQQQQMEQEKQELVASMEEARRRQREAEEGVRRKQEELQRLEQQRQQQEKLLAE 2729

Query: 358  DNQHLREQLQSID 320
            +NQ LRE+LQ ++
Sbjct: 2730 ENQRLRERLQRLE 2742

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>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
 Frame = -2

Query: 493  LNEEMKKLKLQVQEKTKEVHVAQDKTLAIQ---------KQSESLLLEYDR------LLE 359
            L EE ++ + Q++++ +E+  + ++    Q         KQ E   LE  R      L E
Sbjct: 2456 LREEQQRQQRQMEQEKQELVASMEEARRRQCEAEEAVRRKQEELQHLELQRQQQEKLLAE 2515

Query: 358  DNQHLREQLQSID 320
            +NQ LRE+LQ ++
Sbjct: 2516 ENQRLRERLQRLE 2528

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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -2

Query: 484 EMKKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSN 305
           E+KK++++++ K KE+   Q K          ++   D ++E  Q ++E    I+ ++ N
Sbjct: 322 ELKKVEVEIENKKKEIKETQKK----------IIENRDSIIEKEQQIKE----IEEKIKN 367

Query: 304 PS*EKNVLK 278
            + EK  LK
Sbjct: 368 LNYEKERLK 376

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>OPTN_HUMAN (Q96CV9) Optineurin (Optic neuropathy-inducing protein)|
           (E3-14.7K-interacting protein) (FIP-2)
           (Huntingtin-interacting protein HYPL) (NEMO-related
           protein) (Transcription factor IIIA-interacting protein)
           (TFIIIA-IntP)
          Length = 577

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 17/67 (25%), Positives = 38/67 (56%)
 Frame = -2

Query: 478 KKLKLQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSNPS 299
           KKL+LQV+    E+ + Q KT   + +   L + +++LL+++ +  + ++ +  R  +  
Sbjct: 359 KKLELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEEL-TRKESEK 417

Query: 298 *EKNVLK 278
            ++ VLK
Sbjct: 418 VDRAVLK 424

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>GBRA6_RAT (P30191) Gamma-aminobutyric-acid receptor alpha-6 subunit precursor|
           (GABA(A) receptor)
          Length = 453

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -2

Query: 466 LQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSNPS*EKN 287
           LQ Q+  ++   A    +A  K +ESL  E     +   HL++++ S+ L +   S    
Sbjct: 330 LQSQKAERQAQTAAKPPVAKSKTTESLEAEIVVHSDSKYHLKKRISSLTLPIVPSSEASK 389

Query: 286 VLK*NIILSST 254
           VL    IL ST
Sbjct: 390 VLSRTPILPST 400

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>GBRA6_MOUSE (P16305) Gamma-aminobutyric-acid receptor alpha-6 subunit precursor|
           (GABA(A) receptor)
          Length = 453

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 466 LQVQEKTKEVHVAQDKTLAIQKQSESLLLEYDRLLEDNQHLREQLQSIDLRLSNPS*EKN 287
           LQ Q+  ++   A    +A  K SESL  E     +   HL++++ S+ L +   S    
Sbjct: 330 LQSQKAERQAQTAATPPVAKSKASESLEAEIVVHSDSKYHLKKRISSLTLPIVPSSEASK 389

Query: 286 VLK*NIILSST 254
            L    IL ST
Sbjct: 390 ALSRTPILKST 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,960,974
Number of Sequences: 219361
Number of extensions: 1098809
Number of successful extensions: 2865
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2860
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result