ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56g10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/19 (94%), Positives = 18/19 (94%) Frame = -3 Query: 202 HKGAAAGFTAKGIPNSISI 146 HKGAAAG TAKGIPNSISI Sbjct: 844 HKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 34.3 bits (77), Expect = 0.091 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 196 GAAAGFTAKGIPNSISI 146 GAAAG TAKGIPNSISI Sbjct: 850 GAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 33.5 bits (75), Expect = 0.16 Identities = 15/19 (78%), Positives = 17/19 (89%) Frame = -3 Query: 202 HKGAAAGFTAKGIPNSISI 146 +KGAA G TA+GIPNSISI Sbjct: 845 NKGAAEGITARGIPNSISI 863
>DUS8_HUMAN (Q13202) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Dual specificity protein phosphatase hVH-5) Length = 625 Score = 31.6 bits (70), Expect = 0.59 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTASPSNLSHRQPWMNKGRSP 100 P+ APLP LPP S +A+ N + R+ ++ G P Sbjct: 323 PAAGAPLPRLPPPTSESAATGNAAAREGGLSAGGEP 358
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 31.2 bits (69), Expect = 0.77 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -3 Query: 199 KGAAAGFTAKGIPNSISI 146 KG AAG +A+GIPNSISI Sbjct: 853 KGDAAGLSARGIPNSISI 870
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTASP-SNLSHRQPWMNKGRSP 100 P +AP P PP SP SP S H+QP +G P Sbjct: 12 PPPQAPSPMAPPSQSPAPSPHSPYPHQQPGPLQGPPP 48
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 28.9 bits (63), Expect = 3.8 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = -3 Query: 205 VHKGAAAGFTAKGIPNSISI 146 +H+ + G T KGIPNSISI Sbjct: 845 LHRSSEEGLTFKGIPNSISI 864
>DTX1_MOUSE (Q61010) Protein deltex-1 (Deltex-1) (Deltex1) (mDTX1) (FXI-T1)| Length = 627 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = -1 Query: 207 PSTRAPLPGLPPRA------SPTASPSNLSHRQPWMNKGRSPRTKL 88 P+ AP PG+PPR+ +PT +NLS P + S R + Sbjct: 273 PTEPAPPPGVPPRSPSAPNGAPTPGQNNLSRPGPQRSTSVSARASI 318
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTASPSNLSHRQPWMNKGRSP 100 P AP P PP S + P N S+ N +SP Sbjct: 109 PQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
>CAP2_DICDI (P34122) CABP1-related protein p31/p34| Length = 287 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -1 Query: 204 STRAPLPGLPPRASPTASPS 145 +T+AP PG PP A P ++P+ Sbjct: 43 NTQAPRPGFPPSAPPPSAPA 62
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTASP------SNLSHRQPWMNKGRS 103 P+T PL P A+P ++P S R PWMN G S Sbjct: 335 PAT-TPLASAPRPAAPASNPPPPSLMSTTQSRPPWMNSGPS 374
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTAS-PSNLSHRQPWMNKGRS 103 P AP P P P S S R PWMN G S Sbjct: 339 PLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPS 374
>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)| (Hedgehog acyltransferase) (Skinny hedgehog protein) Length = 499 Score = 27.7 bits (60), Expect = 8.6 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -1 Query: 177 PPRASPTASPSNLSHRQPWM 118 PP A PT S SH PW+ Sbjct: 191 PPSAQPTPSAQGASHSYPWL 210
>IL6RA_HUMAN (P08887) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (Membrane glycoprotein 80) (gp80) (CD126 antigen) Length = 468 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 6/42 (14%) Frame = -1 Query: 207 PSTRAPLPGLPPRASPTASPSNL------SHRQPWMNKGRSP 100 P P P L P SP SPS+L SH +P RSP Sbjct: 415 PERPRPTPVLVPLISPPVSPSSLGSDNTSSHNRPDARDPRSP 456 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,095,277 Number of Sequences: 219361 Number of extensions: 500887 Number of successful extensions: 2307 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1953 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2297 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
