ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HBT1_YEAST (Q07653) Protein HBT1 (HUB1 target protein 1) 30 1.1
2DHGL_DROME (P18173) Glucose dehydrogenase [acceptor] precursor (... 30 1.9
3NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer... 29 2.5
4LACI_KLEPN (P06220) Lactose operon repressor (Fragment) 29 2.5
5RM02_CANGA (Q6FS31) 60S ribosomal protein L2, mitochondrial prec... 29 3.3
6SP60_DICDI (P15270) Spore coat protein SP60 precursor 28 4.3
7GP120_MOUSE (Q7TMA4) G-protein coupled receptor 120 (G-protein c... 28 4.3
8LEU2_LACLA (Q02142) 3-isopropylmalate dehydratase large subunit ... 28 5.6
9CD2L7_CAEEL (P46551) Putative cell division cycle 2-related prot... 28 5.6
10QUEF_AQUAE (O67073) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-) 28 5.6
11NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer... 28 7.3
12SYQ_NEIMB (P56927) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 28 7.3
13RF3_PSEPK (Q88PH8) Peptide chain release factor 3 (RF-3) 27 9.5
14LCR76_ARATH (P82785) Putative low-molecular-weight cysteine-rich... 27 9.5
15MDHP_PEA (P21528) Malate dehydrogenase [NADP], chloroplast precu... 27 9.5

>HBT1_YEAST (Q07653) Protein HBT1 (HUB1 target protein 1)|
          Length = 1046

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
 Frame = +1

Query: 64  TGTHTLSRGSASPDGTHTQHAHISIVWSYTKLAALKDRACQALPQYQRGTPLH*YTKPQS 243
           T TH  S+ +  P  T T H HI++    T   +         P+       H  TK   
Sbjct: 220 TNTHEHSKANTGPSATATTHGHINV--KTTHPVSHGHSGSSTGPKSTAAAQDHSSTKTNP 277

Query: 244 TVL--------RSSYTRTYAHENANTDR 303
           +V          SS T+ Y++ ++N+DR
Sbjct: 278 SVTHGHTSVKDNSSATKGYSNTDSNSDR 305



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>DHGL_DROME (P18173) Glucose dehydrogenase [acceptor] precursor (EC 1.1.99.10)|
           [Contains: Glucose dehydrogenase [acceptor] short
           protein]
          Length = 625

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 12  KHNYHLTLDT*SIPIPEHGHTHTLSGKRISRRYTHTARTHLYRLVVHKASSSQGPR---L 182
           ++N H+ L+T +  I  H HT  + G  +S ++  T +  + + VV  A +   P    L
Sbjct: 272 RNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLL 331

Query: 183 SGI 191
           SG+
Sbjct: 332 SGV 334



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>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 23/96 (23%), Positives = 43/96 (44%)
 Frame = +1

Query: 46   PSRFPNTGTHTLSRGSASPDGTHTQHAHISIVWSYTKLAALKDRACQALPQYQRGTPLH* 225
            PSR  ++ + + SR S S   T ++H   S+ +S+++  +    +      Y R      
Sbjct: 1303 PSRDDDSQSRSPSR-SRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGW 1361

Query: 226  YTKPQSTVLRSSYTRTYAHENANTDRHHSSYSVPPS 333
            Y++ ++    SSY    +H  ++  R  SS   P S
Sbjct: 1362 YSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHS 1397



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>LACI_KLEPN (P06220) Lactose operon repressor (Fragment)|
          Length = 354

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
 Frame = -3

Query: 153 CVRPNDRDVCVLCVCTVWR--------CASPRECVCARVRESGW 46
           CVR + RD C  CV  +W          A P   V AR+R + W
Sbjct: 160 CVRFDHRDGCGACVRHLWEMGHREFGLLAGPESSVSARLRLASW 203



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>RM02_CANGA (Q6FS31) 60S ribosomal protein L2, mitochondrial precursor|
          Length = 368

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 ALKDRACQAL-PQYQRGTPLH*YTKPQSTVLRSSYTRTYAHENANTDRHHSSYSVPP 330
           ++KD A + L P+   G  +    KP   ++R   T+ Y  EN    R H+ Y+V P
Sbjct: 31  SMKDSAGRRLGPKKYEGQDV----KPGEIIMRQRGTKFYPGENVKIGRDHTIYAVEP 83



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>SP60_DICDI (P15270) Spore coat protein SP60 precursor|
          Length = 424

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 153 CVRPNDRDVCVLCVCTVWRCASPRECVC 70
           CV   DR +CV   C   RC     C+C
Sbjct: 255 CVATKDRIICVKPTCDNTRCPPNYHCIC 282



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>GP120_MOUSE (Q7TMA4) G-protein coupled receptor 120 (G-protein coupled receptor|
           GT01)
          Length = 361

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 79  LSRGSASPDGTHTQHAHISIVWSYTKLAAL 168
           L RG + P G  TQ A ++ +W Y+ LAAL
Sbjct: 143 LRRGLSGP-GRRTQAALLAFIWGYSALAAL 171



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>LEU2_LACLA (Q02142) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 460

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 54  IPEHGHTHTLSGKRISRRYTHTARTHLYRLVVHKASSSQG 173
           IPE+ H  + S +    R  H ARTHL    +  A++  G
Sbjct: 410 IPEYVHCASTSNRNFEGRQGHNARTHLCSPAMAAAAAIAG 449



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>CD2L7_CAEEL (P46551) Putative cell division cycle 2-related protein kinase 7|
           (EC 2.7.11.22)
          Length = 730

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 229 TKPQSTVLRSSYTRTYAHENANTDRHHSSYSVPPSAG 339
           T+P +T  +S+ +  + H + ++  HH + S+PPS G
Sbjct: 662 TQPSTTTTKSNGSSNHHHHHHHS--HHHASSLPPSGG 696



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>QUEF_AQUAE (O67073) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 129

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 109 YRLEMRFPERVCVCPCSG 56
           Y +E+ FPE  C+CP SG
Sbjct: 30  YMIEITFPEFTCLCPRSG 47



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>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/90 (22%), Positives = 41/90 (45%)
 Frame = +1

Query: 46   PSRFPNTGTHTLSRGSASPDGTHTQHAHISIVWSYTKLAALKDRACQALPQYQRGTPLH* 225
            PSR  ++ + +  R S S   T ++H   S+ +S+++  +    +      Y R      
Sbjct: 1294 PSRDGDSQSRSPHR-SRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRDW 1352

Query: 226  YTKPQSTVLRSSYTRTYAHENANTDRHHSS 315
            Y++ ++    SSY   ++H  ++  R  SS
Sbjct: 1353 YSRGRTRSRSSSYGSFHSHRTSSRSRSRSS 1382



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>SYQ_NEIMB (P56927) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 562

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 21  YHLTLDT*SIPIPEHGHTHTLSGKRISRRYTHTARTHLYRLVVHK-ASSSQGPRLSGITT 197
           Y   LD  +IP P           R+   YT T++  L +LVV K  S    PR+  I+ 
Sbjct: 242 YDCVLD--NIPAPHATRPRQYEFSRLELLYTITSKRKLNQLVVEKHVSGWDDPRMPTISG 299

Query: 198 VPARYSTP 221
           +  R  TP
Sbjct: 300 MRRRGYTP 307



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>RF3_PSEPK (Q88PH8) Peptide chain release factor 3 (RF-3)|
          Length = 527

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  YHLTLDT*SIPIPEHGHTHTLSGKRISRRYTHTARTHL 134
           YHLT D   +  P HGH  T   K I +  +  AR HL
Sbjct: 181 YHLTGDYIVVYTPGHGHERT-EAKIIQKLDSDEARAHL 217



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>LCR76_ARATH (P82785) Putative low-molecular-weight cysteine-rich protein LCR76|
           precursor
          Length = 86

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 331 KAVHYMTSGVCQCWRSRARTCVCTSY-EGRCFG 236
           K+++Y   G+C  WRS  R C+   + +GRC G
Sbjct: 37  KSLNYR--GLCLKWRSCKRVCISEGFPDGRCKG 67



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>MDHP_PEA (P21528) Malate dehydrogenase [NADP], chloroplast precursor (EC|
           1.1.1.82) (NADP-MDH)
          Length = 441

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +2

Query: 164 LSRT---ALVRHYHSTSAVLHST 223
           LSRT    L RHYHST A LH T
Sbjct: 24  LSRTRTRTLPRHYHSTFAPLHRT 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,266,344
Number of Sequences: 219361
Number of extensions: 1087695
Number of successful extensions: 2913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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