ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrins... 54 1e-05
2gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome... 36 2.9
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 2.9
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.9
5dbj|AK101571.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 2.9

>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA,
            complete cds
          Length = 1283

 Score = 54.0 bits (27), Expect = 1e-05
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 3    tacgcatatgcagctgccgacacataa 29
            |||||||||||||||||||||||||||
Sbjct: 1106 tacgcatatgcagctgccgacacataa 1080



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>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015G17, complete sequence
          Length = 158173

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     tacgcatatgcagctgcc 20
             ||||||||||||||||||
Sbjct: 97300 tacgcatatgcagctgcc 97283



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 3        tacgcatatgcagctgcc 20
                ||||||||||||||||||
Sbjct: 22251518 tacgcatatgcagctgcc 22251535



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 3        tacgcatatgcagctgcc 20
                ||||||||||||||||||
Sbjct: 22244547 tacgcatatgcagctgcc 22244564



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>dbj|AK101571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050I23, full
           insert sequence
          Length = 1706

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 3   tacgcatatgcagctgcc 20
           ||||||||||||||||||
Sbjct: 336 tacgcatatgcagctgcc 353


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 305,737
Number of Sequences: 3902068
Number of extensions: 305737
Number of successful extensions: 54818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54781
Number of HSP's gapped (non-prelim): 37
length of query: 33
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 13
effective length of database: 17,155,003,908
effective search space: 223015050804
effective search space used: 223015050804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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