>PACC_ASPOR (Q9HFB3) pH-response transcription factor pacC/RIM101|
          Length = 662

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 244 TNQHPPVLLPPGSHAFATTICFPVLTHDKKMSPSET 351
           T   PP  LPP SHA ATT   P++ +    SP+ T
Sbjct: 377 TTHSPPSQLPP-SHATATTSAGPIMANPATHSPTGT 411

>PACC_ASPGI (Q5XL24) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 244 TNQHPPVLLPPGSHAFATTICFPVLTHDKKMSPS 345
           T   PP  LPP SHA ATT    +++H    SPS
Sbjct: 388 TTHSPPSQLPP-SHATATTSAATMMSHPATHSPS 420

>PACC_ASPPA (Q96UW0) pH-response transcription factor pacC/RIM101|
          Length = 662

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 244 TNQHPPVLLPPGSHAFATTICFPVLTHDKKMSPSET 351
           T   PP  LPP SHA ATT   P++ +    SP+ T
Sbjct: 377 TTHSPPSQLPP-SHATATTSAGPMMANPATHSPTGT 411

>YL006_MIMIV (Q5UP81) Hypothetical protein L6|
          Length = 218

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 106 SSTPHCKKSLNYPYSNETNKIKYARRRLTNQPSLFLQGPVNFVTPWTNQ 252
           +S  HC + + Y  +   N IKY+R+++T +  L  + P+  +  +TN+
Sbjct: 56  NSDGHCDELVFYDENKHDNIIKYSRKKITTKHEL-EEYPIGSLISYTNK 103

>V120_VZVD (P09277) Capsid assembly protein 21|
          Length = 1038

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 211 LQGPVNFVTPWTNQHPPVLLPPGSHAFATTIC 306
           L   +  + P+T  HPPVLLP       + IC
Sbjct: 650 LSALITILEPFTRTHPPVLLPSHVSTIDSLIC 681

>YEL4_YEAST (P40017) Hypothetical 103.3 kDa protein in PRO3-GCD11 intergenic|
           region
          Length = 923

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 4   TKSNLFTIYAHVSGKRDGRQRQAFLLGSATSPKNSSTPHCKKSLNYPYSNETNKIKYA 177
           T + L TI+ H+     G ++    LGS TS    +  + +K L   Y NE ++I  A
Sbjct: 276 TAAELTTIFNHIIKDSSGIEKST-ALGSLTSHSFRNWKYARKRLQKRYPNELHRIDSA 332

>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1|
           (Adrenoleukodystrophy protein) (ALDP)
          Length = 736

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 273 RKENGWVLVCPWRDKIHGPLEEKARLVGQASAGVFY 166
           ++E GW  VC W+D + G   EK R+     A +FY
Sbjct: 590 QREGGWEAVCDWKDVLSG--GEKQRI---GMARMFY 620

>MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)|
           (Cdc25C-associated protein kinase 1) (cTAK1) (C-TAK1)
           (Serine/threonine protein kinase p78) (Ser/Thr protein
           kinase PAR-1) (Protein kinase STK10)
          Length = 776

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +1

Query: 76  LLGSATSPKNSSTPHCKKSLNYPYSN-------ETNKIKYARRRLTNQPSLFLQGPVNFV 234
           +LG+A++P  +  P  KKS   P SN         N    + R   ++ S+   G  N  
Sbjct: 494 MLGNASNPNKADIPERKKSSTVPSSNTASGGMTRRNTYVCSERTTADRHSVIQNGKENST 553

Query: 235 TPWTNQHPPV 264
            P  +Q  PV
Sbjct: 554 IP--DQRTPV 561

>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic|
           region
          Length = 492

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
 Frame = +1

Query: 85  SATSPKNSSTP-----HCKKSL---NYPYSNETNKIKYARRRLTNQPSLFLQGPVNF--V 234
           SATS +N S+P     H ++     NYP+  + N + Y       QP+ F   P  F   
Sbjct: 334 SATSNRNGSSPVPITQHHQQQFSANNYPFPQQPNGMPYPPYSPFPQPTNFQYPPPPFGQA 393

Query: 235 TP--WTNQHPPVLLPP 276
           TP  ++N  P   LPP
Sbjct: 394 TPAQFSNTVPYGSLPP 409

>ARGC_SYNEL (P59312) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 350

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 235 TPWTNQHPPVLLPPGSHAFATTICFPVLTHDKK 333
           +PW N  PP L P    A+ T  CF  +  D++
Sbjct: 274 SPWVNILPPGLYPQTKWAWGTNACFIGIEVDER 306

>LPH_RABIT (P09849) Lactase-phlorizin hydrolase precursor|
           (Lactase-glycosylceramidase) [Includes: Lactase (EC
           3.2.1.108); Phlorizin hydrolase (EC 3.2.1.62)]
          Length = 1926

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 173 YFILFVSFEYG*FKLFLQWGVLLFLGEVAEPRRNACLC 60
           YF    + E   +K+FL W  LL  G   +P  NA  C
Sbjct: 75  YFSSLRASEITHYKVFLSWAQLLPAGHSGDPDGNAVRC 112

>HEM6_SYNP6 (Q5N3S5) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 342

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 178 RRRLTNQPSLFLQGPVNFVTPWTNQHPPVLL 270
           R R+  + ++F QG VNF   W  + PP +L
Sbjct: 60  RSRVIREGNVFEQGGVNFSEVWGEKLPPSIL 90

>Y1275_ARATH (P61430) Hypothetical protein At1g22275|
          Length = 856

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 76  LLGSATSPKNSSTPHCKKSLNYPYSNETNKIKYARRRLTNQPSLF 210
           +L  AT+PK     H  K  +  Y  ETN  +  +RR T Q ++F
Sbjct: 762 ILKEATNPK-----HHSKVTHREYEVETNNGRIPKRRKTRQTTMF 801

>CLPP_CHLTE (Q8KC73) ATP-dependent Clp protease proteolytic subunit (EC|
           3.4.21.92) (Endopeptidase Clp)
          Length = 225

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 70  AFLLGSATSPKNSSTPHCKKSLNYP 144
           AFLL S TS K +S PH +  ++ P
Sbjct: 126 AFLLASGTSGKRASLPHSRIMIHQP 150

>NYX_MOUSE (P83503) Nyctalopin precursor|
          Length = 476

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 339 GHLFVMRKNRKADCSSEGMRSWRKENGWV 253
           G LF+ R   + DC  E +R W + +G V
Sbjct: 324 GRLFLFRNPWRCDCQLEWLRDWMEGSGRV 352

>CELR2_HUMAN (Q9HCU4) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
            (Epidermal growth factor-like 2) (Multiple epidermal
            growth factor-like domains 3) (Flamingo 1)
          Length = 2923

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 91   TSPKNSSTPHCKKSLNYPYSNETNKIKYARRRLTNQPSL--FLQGPVNFVTPWTNQHPPV 264
            TS  N  +P+    L  PY +    +    R   +QPS   FL    + + P   Q PP 
Sbjct: 2641 TSSYNCPSPYADGRLYQPYGDSAGSLHSTSRSGKSQPSYIPFLLREESALNP--GQGPPG 2698

Query: 265  LLPPGS 282
            L  PGS
Sbjct: 2699 LGDPGS 2704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,579,219
Number of Sequences: 219361
Number of extensions: 950447
Number of successful extensions: 2855
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2855
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)