ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EFG1_TREPA (O83748) Elongation factor G 1 (EF-G 1) 30 3.3
2ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5 28 9.7
3PALI_EMENI (O93956) pH-response regulator protein palI/RIM9 28 9.7
4ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing prote... 28 9.7

>EFG1_TREPA (O83748) Elongation factor G 1 (EF-G 1)|
          Length = 695

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +2

Query: 89  TESYNGVSESNPTANPSFFSPEYIAPINQCSGDLHLSQQMEREQRQWRGD*PSG 250
           +++ N  ++ +PT   SF  PE    I Q  G+LHL   +ER +R+++ +  +G
Sbjct: 421 SKALNRFTKEDPTFR-SFVDPESNQTIIQGMGELHLDVYIERMRREYKCEVETG 473



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>ANKR5_MOUSE (Q9D2J7) Ankyrin repeat domain-containing protein 5|
          Length = 775

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 126 VGLDSETPL*LSVLMGF--CCKYV 61
           +G+D  TPL  + + GF  CCKY+
Sbjct: 247 IGMDGNTPLHFAAMGGFADCCKYI 270



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>PALI_EMENI (O93956) pH-response regulator protein palI/RIM9|
          Length = 549

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 321 TPGSPTWPPAT*RVRQRH-HARQPPPLG*SPR 229
           TPG P  PP   RVR ++   R+ PP G +PR
Sbjct: 303 TPGPPGPPPPDSRVRDQYSDPRRGPPTGFAPR 334



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>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34|
          Length = 500

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 86  NTESYNGVSESNPTANPSFFSPEYIAPINQ--CSGDLHL 196
           N ES NGV +S+  ANP   SP Y +   Q   S DL +
Sbjct: 144 NPESRNGVKDSSFFANPVEISPPYCSQGRQPTASSDLRM 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,955,289
Number of Sequences: 219361
Number of extensions: 878058
Number of successful extensions: 2190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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