>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = +2

Query: 110 QTVSTVQQRNGKPAPAPVCRTQEGADRHNIMPK*NLRFPFGIPGTNATNT*APVSAVSGT 289
           Q   TV   N  PAPAP   T                 P   P T AT T AP ++ +GT
Sbjct: 7   QENGTVNGANAAPAPAPAQTT-----------------PTPAPATAATPTTAPAASANGT 49

Query: 290 TGLVQSGDIKASST 331
                  +  ++S+
Sbjct: 50  AANAMKPEASSNSS 63

>KDPD_CLOAB (P94608) Sensor protein kdpD (EC 2.7.13.3)|
          Length = 900

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 79 FFGYSVAVGICYALLRASSF 20
          FFGY+  VG  YA+LRA+ +
Sbjct: 32 FFGYAAGVGKTYAMLRAAHY 51

>ADH1_NAJNA (P80512) Alcohol dehydrogenase 1 (EC 1.1.1.1)|
          Length = 375

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 275 RTPVPMCL*HSYPGSRRETEDSIWALYCADQPLPVFYIQ-GRVRVCRS 135
           R P+PM L H   G      + +  +   D+ +P+F  Q G+ R C+S
Sbjct: 58  RMPLPMVLGHEAAGVVESVGEGVTCVKPGDKVIPLFAPQCGKCRACQS 105

>CRN6_CAEEL (P34508) Cell death-related nuclease 6 precursor (EC 3.1.-.-)|
          Length = 378

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 208 IESSVSLRDPGYECYKHIGTGVRCFWHYRLSSVWRH 315
           I S + + +  Y+C  + G+ V  F  Y+L  +W H
Sbjct: 8   IVSLIGISNAAYQCKDNNGSNVDWFVFYKLPHLWNH 43

>ADH1B_HUMAN (P00325) Alcohol dehydrogenase 1B (EC 1.1.1.1) (Alcohol|
           dehydrogenase beta subunit)
          Length = 374

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 272 TPVPMCL*HSYPGSRRETEDSIWALYCADQPLPVFYIQ-GRVRVCRS 135
           TP+P+ L H   G      + +  +   D+ +P+F  Q G+ RVC++
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKN 105

>SYK_STRCO (Q9X895) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 580

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 248 HSYPGSRRETEDSIWALYCADQPLPVFY----IQGRVRVCRSSVELSTPFVNLLVICWCV 81
           HS PGS  +    I  ++  +QP+   Y    I G  ++  S   + TP   L ++   +
Sbjct: 288 HSSPGSSFQVGGQIVGIFGGEQPIGPMYAFVGISGMAKMSSSKGGVPTPADALKIMEPQL 347

Query: 80  LFWIFSSSR 54
           L W+++  R
Sbjct: 348 LRWLYARRR 356

>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 104  G*QTVSTVQQRNGKPAPAPVCRTQEGADRHNIMPK 208
            G  TV+TVQ ++  P PAPV +    A +    PK
Sbjct: 3445 GKATVTTVQVQSAPPKPAPVAKQPAPAPKPKPKPK 3479

>YL100_MIMIV (Q5UPH0) Putative ankyrin repeat protein L100|
          Length = 602

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 40  ARNKSLLLLNIQKSTHQQITSRLTNGVDSSTEERQTRTRPC 162
           AR+   L++  +K  H  +T  ++NG D +    +   R C
Sbjct: 504 ARDNEALIIACEKCNHTIVTILVSNGADITARNNEALIRAC 544

>YWBM_BACSU (P39596) Hypothetical protein ywbM|
          Length = 385

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 269 VSAVSGTTGLVQSGDIKASSTFYCGA 346
           V A    TG V+SGDI+ S T Y  A
Sbjct: 166 VKATEAFTGAVKSGDIEKSKTLYAKA 191

>ADH1G_HUMAN (P00326) Alcohol dehydrogenase 1C (EC 1.1.1.1) (Alcohol|
           dehydrogenase gamma subunit)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 272 TPVPMCL*HSYPGSRRETEDSIWALYCADQPLPVFYIQ-GRVRVCRS 135
           TP+P+ L H   G      + +  +   D+ +P+F  Q G+ R+C++
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKN 105

>ILVD_SYNPX (Q7U763) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 263 APVSAVSGTTGLVQSGD 313
           AP +AV GT GLVQ GD
Sbjct: 482 APEAAVGGTIGLVQGGD 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,456,875
Number of Sequences: 219361
Number of extensions: 1233407
Number of successful extensions: 2586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2586
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)