Clone Name | rbart56f08 |
---|---|
Clone Library Name | barley_pub |
>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein| 1.2) (OsTIP1.2) Length = 252 Score = 35.4 bits (80), Expect = 0.033 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -1 Query: 388 ICFIGQRPHEQLPTAEY 338 I FIGQRPH+QLPTA+Y Sbjct: 236 IIFIGQRPHDQLPTADY 252
>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 955 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Frame = +2 Query: 110 INLDHGIEAFITEDVHQDKRLFLTDSHTV-----YPEF---LKDKRVTMKLNWL 247 + L H I FITE + Q +L S +PE+ L DK++ +++NW+ Sbjct: 747 LKLAHPIMPFITETIWQRIKLIQNISEKTIMLQDFPEYNHKLFDKKILVQMNWM 800
>PRP28_DEBHA (Q6BLU9) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC| 3.6.1.-) Length = 580 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +2 Query: 23 YVVTGQKPEHVHKIGKTSNC*DRQQICTNINLDHGIEAFITEDVHQDKRLFLTDSHTVYP 202 Y +T + E++H+IG+T ++ CT I+ D E F+ D + FL P Sbjct: 512 YQMTKKFDEYIHRIGRTGRAGNKGTSCTFID-DGDSEVFL------DLKKFLNKGKKKCP 564 Query: 203 EFL 211 E+L Sbjct: 565 EWL 567
>DUOX_DROME (Q9VQH2) Dual oxidase (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1475 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 120 SRLMFVQICCLS*QFDVLPILCTCSGFCPV 31 S LMF+ +C +PILC +G+C V Sbjct: 563 SELMFIYVCVF---LGFVPILCAGAGYCVV 589
>DPO4_METAC (Q8TIW3) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 366 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 33 QDKSQSMYTRLARHQIARTDSRFVQTLILTME*KHS*LRTYTKTR 167 Q+ S+ +LA I + DSR + ++T+ +S RTYTK+R Sbjct: 269 QELILSLLEKLAGDVIEKLDSRELSFRVVTVTVINSNFRTYTKSR 313
>E4PD_SHIFL (P0A9B9) D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.-) (E4PDH)| Length = 338 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 264 HLLDFSISHGDDAWMIRRDSD 326 HLL + SHG AW +R++ D Sbjct: 45 HLLKYDTSHGRFAWEVRQERD 65
>E4PD_ECOLI (P0A9B6) D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.-) (E4PDH)| Length = 338 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 264 HLLDFSISHGDDAWMIRRDSD 326 HLL + SHG AW +R++ D Sbjct: 45 HLLKYDTSHGRFAWEVRQERD 65
>E4PD_ECOL6 (P0A9B7) D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.-) (E4PDH)| Length = 338 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 264 HLLDFSISHGDDAWMIRRDSD 326 HLL + SHG AW +R++ D Sbjct: 45 HLLKYDTSHGRFAWEVRQERD 65
>E4PD_ECO57 (P0A9B8) D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.-) (E4PDH)| Length = 338 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 264 HLLDFSISHGDDAWMIRRDSD 326 HLL + SHG AW +R++ D Sbjct: 45 HLLKYDTSHGRFAWEVRQERD 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,186,737 Number of Sequences: 219361 Number of extensions: 807441 Number of successful extensions: 1608 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1608 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)