ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56f04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC124725.3| Mus musculus BAC clone RP23-459F16 from chromosome 2, complete sequence Length = 168983 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 aaactaacaaataaacaaagcag 55 ||||||||||||||||||||||| Sbjct: 77392 aaactaacaaataaacaaagcag 77370
>emb|BX294446.6| Mouse DNA sequence from clone RP23-459F16 on chromosome 2, complete sequence Length = 73907 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 aaactaacaaataaacaaagcag 55 ||||||||||||||||||||||| Sbjct: 20845 aaactaacaaataaacaaagcag 20867
>gb|AC125168.4| Mus musculus BAC clone RP24-449N2 from chromosome 3, complete sequence Length = 166604 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 29 aaataaactaacaaataaacaaagca 54 |||||||| ||||||||||||||||| Sbjct: 78394 aaataaacaaacaaataaacaaagca 78369
>gb|AC099414.4| Mus musculus BAC clone RP23-122C18 from 3, complete sequence Length = 203057 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 29 aaataaactaacaaataaacaaagca 54 |||||||| ||||||||||||||||| Sbjct: 11127 aaataaacaaacaaataaacaaagca 11152
>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8, complete sequence Length = 112751 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 26 cgcaaataaactaacaaataaacaaa 51 ||||||||||| |||||||||||||| Sbjct: 92533 cgcaaataaacaaacaaataaacaaa 92558
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 gcaaataaactaacaaataaac 48 |||||||||||||||||||||| Sbjct: 2705852 gcaaataaactaacaaataaac 2705873 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaa 47 |||||||||||||||||||| Sbjct: 2705865 caaataaactaacaaataaa 2705884
>gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, complete sequence Length = 202863 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 30 aataaactaacaaataaacaaa 51 |||||||||||||||||||||| Sbjct: 60092 aataaactaacaaataaacaaa 60113
>gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 map 7, complete sequence Length = 199260 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 30 aataaactaacaaataaacaaa 51 |||||||||||||||||||||| Sbjct: 152024 aataaactaacaaataaacaaa 152003
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 345 gttcttccacctcgtcgacctcgttctcgc 374 ||||||| ||||||||||||| |||||||| Sbjct: 2760563 gttcttcgacctcgtcgaccttgttctcgc 2760592
>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence Length = 184523 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gcaaataaactaacaaataaa 47 ||||||||||||||||||||| Sbjct: 3769 gcaaataaactaacaaataaa 3789
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 catgcgcgtggtggtggtgga 398 ||||||||||||||||||||| Sbjct: 2074901 catgcgcgtggtggtggtgga 2074921
>gb|AC146610.4| Mus musculus BAC clone RP23-68E7 from chromosome 7, complete sequence Length = 218291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 ggttcaggaggcccttgaacc 248 ||||||||||||||||||||| Sbjct: 52487 ggttcaggaggcccttgaacc 52467
>ref|XM_718121.1| Candida albicans SC5314 sugar transporter-like protein (CaO19_6005), mRNA Length = 2235 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaac 48 ||||||||||||||||||||| Sbjct: 616 caaataaactaacaaataaac 596
>ref|XM_717974.1| Candida albicans SC5314 sugar transporter-like protein (CaO19_13426), mRNA Length = 2235 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaac 48 ||||||||||||||||||||| Sbjct: 616 caaataaactaacaaataaac 596
>gb|AC122523.5| Mus musculus BAC clone RP24-492N18 from chromosome 7, complete sequence Length = 163841 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 ggttcaggaggcccttgaacc 248 ||||||||||||||||||||| Sbjct: 131891 ggttcaggaggcccttgaacc 131871
>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence Length = 179947 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gcaaataaactaacaaataaa 47 ||||||||||||||||||||| Sbjct: 151546 gcaaataaactaacaaataaa 151566
>emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chromosome X Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene and a chaperonin containing TCP1, subunit 4 (delta) (CCT4) pseudogene, complete sequence Length = 157946 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 taaactaacaaataaacaaag 52 ||||||||||||||||||||| Sbjct: 13984 taaactaacaaataaacaaag 13964
>emb|CR847858.15| Zebrafish DNA sequence from clone DKEY-78H3 in linkage group 5, complete sequence Length = 255113 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 aataaactaacaaataaacaa 50 ||||||||||||||||||||| Sbjct: 61248 aataaactaacaaataaacaa 61228
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 catgcgcgtggtggtggtgga 398 ||||||||||||||||||||| Sbjct: 346419 catgcgcgtggtggtggtgga 346439
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 catgcgcgtggtggtggtgga 398 ||||||||||||||||||||| Sbjct: 154028 catgcgcgtggtggtggtgga 154048
>emb|BX465863.11| Zebrafish DNA sequence from clone RP71-5C20 in linkage group 5, complete sequence Length = 117261 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 aataaactaacaaataaacaa 50 ||||||||||||||||||||| Sbjct: 110668 aataaactaacaaataaacaa 110688
>emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 in linkage group 3, complete sequence Length = 173019 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaac 48 ||||||||||||||||||||| Sbjct: 94789 caaataaactaacaaataaac 94809
>emb|CR388080.12| Zebrafish DNA sequence from clone CH211-174H4 in linkage group 19, complete sequence Length = 153236 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 gcaaataaactaacaaataaacaaa 51 ||||||||||||||||| ||||||| Sbjct: 40280 gcaaataaactaacaaacaaacaaa 40256
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 157 gattaaccaaagtaattaaac 177 ||||||||||||||||||||| Sbjct: 320411 gattaaccaaagtaattaaac 320391
>gb|AC154815.2| Mus musculus BAC clone RP24-534C22 from chromosome 9, complete sequence Length = 173315 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 43613 caaataaacaaacaaataaacaaa 43590
>gb|AC165353.4| Mus musculus BAC clone RP23-167C2 from chromosome 3, complete sequence Length = 198393 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 161259 caaataaacaaacaaataaacaaa 161282
>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA Length = 1754 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagtacagggaacagattaa 162 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AC120159.9| Mus musculus chromosome 19, clone RP24-408B13, complete sequence Length = 178918 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 31560 caaataaacaaacaaataaacaaa 31537
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0004D06, complete sequence Length = 157547 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 29333 ggcggcggccgccatggctg 29314
>ref|NM_028735.1| Mus musculus tetratricopeptide repeat domain 21A (ttc21a), mRNA Length = 4187 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, complete sequence Length = 235471 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 36685 ggaacagcttcatcttcagg 36704
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gcgccggccggcggtacgta 212 |||||||||||||||||||| Sbjct: 472526 gcgccggccggcggtacgta 472507
>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete sequence Length = 224982 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 181150 caaataaacaaacaaataaacaaa 181127
>gb|AC135963.3| Mus musculus BAC clone RP23-346N11 from chromosome 7, complete sequence Length = 202404 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 97119 caaataaacaaacaaataaacaaa 97142
>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence Length = 189032 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||||||||||||||| ||||||| Sbjct: 48271 caaataaactaacaaacaaacaaa 48248
>gb|AC125135.5| Mus musculus BAC clone RP24-321M1 from chromosome 17, complete sequence Length = 182503 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||||||||||||||| ||||||| Sbjct: 99810 caaataaactaacaaacaaacaaa 99787
>gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome 13, complete sequence Length = 184155 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaagcag 55 ||||||||| |||||| ||||||||||| Sbjct: 113622 caaataaacaaacaaacaaacaaagcag 113649
>emb|CR450787.6| Zebrafish DNA sequence from clone CH211-222O17 in linkage group 12, complete sequence Length = 212974 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 180725 caaataaacaaacaaataaacaaa 180748
>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence Length = 194221 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 89138 caaataaacaaacaaataaacaaa 89161
>gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, complete sequence Length = 177775 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 153438 ggaacagcttcatcttcagg 153457
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 129150 ggcggcggccgccatggctg 129131
>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3, complete sequence Length = 111124 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 agcttcatcttcaggccttc 429 |||||||||||||||||||| Sbjct: 42077 agcttcatcttcaggccttc 42058
>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a kinesin heavy chain member 2 (KIF2) pseudogene and a Huntingtin interacting protein K (HYPK) pseudogene, complete sequence Length = 174045 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aaactaacaaataaacaaag 52 |||||||||||||||||||| Sbjct: 7207 aaactaacaaataaacaaag 7188
>emb|CR381602.30| Zebrafish DNA sequence from clone DKEY-183M22 in linkage group 6, complete sequence Length = 192136 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 89428 caaataaacgaacaaataaacaaa 89405
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 192022 caaataaacaaacaaataaacaaa 192045
>emb|AL136525.17| Human DNA sequence from clone RP11-147H23 on chromosome 13 Contains the 3' end of gene for a novel protein similar to phosphoinositide-binding protein and the 3' end of a novel gene for a novel protein similar to oxidoreductase, complete sequence Length = 145340 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 36259 caaataaacaaacaaataaacaaa 36236
>gb|AC157785.2| Mus musculus chromosome 19, clone RP24-272L14, complete sequence Length = 159030 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 18574 caaataaacaaacaaataaacaaa 18597
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||| ||||||||||||||||||| Sbjct: 189016 caaacaaactaacaaataaacaaa 188993
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 92328 ggcggcggccgccatggctg 92309
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 357385 caaataaacaaacaaataaacaaa 357408
>emb|AL662841.10| Mouse DNA sequence from clone RP23-31O3 on chromosome 11 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 109589 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gcaaataaactaacaaataa 46 |||||||||||||||||||| Sbjct: 8408 gcaaataaactaacaaataa 8389
>emb|CR854930.5| Zebrafish DNA sequence from clone CH211-268F11 in linkage group 13, complete sequence Length = 92936 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 |||||||| ||||||||||||||| Sbjct: 19611 caaataaattaacaaataaacaaa 19634
>emb|BX465856.14| Zebrafish DNA sequence from clone DKEY-88D24 in linkage group 17, complete sequence Length = 156899 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 88682 caaataaacaaacaaataaacaaa 88659
>emb|BX293994.28| Zebrafish DNA sequence from clone DKEY-256K14 in linkage group 10, complete sequence Length = 210640 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 144927 caaataaacaaacaaataaacaaa 144904
>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22, complete sequence Length = 195552 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 18217 caaataaacaaacaaataaacaaa 18240
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 57919 caaataaacaaacaaataaacaaa 57942
>gb|AC091938.2| Homo sapiens chromosome 5 clone RP11-329N11, complete sequence Length = 70122 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gcaaataaactaacaaataa 46 |||||||||||||||||||| Sbjct: 34301 gcaaataaactaacaaataa 34320
>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205209 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 58584 caaataaacaaacaaataaacaaa 58607
>dbj|AK133304.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932431P04 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 4042 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 763 ggaacagcttcatcttcagg 744
>dbj|AK156752.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830047N21 product:unclassifiable, full insert sequence Length = 2735 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 162 caaataaacaaacaaataaacaaa 185
>dbj|AK163163.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730057N22 product:Hypothetical tetratricopeptide repeat homolog [Mus musculus], full insert sequence Length = 3328 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 644 ggaacagcttcatcttcagg 625
>ref|XM_683108.1| PREDICTED: Danio rerio similar to high-mobility group protein 2-like 1 isoform a (LOC559742), mRNA Length = 1887 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 agcttcatcttcaggccttc 429 |||||||||||||||||||| Sbjct: 662 agcttcatcttcaggccttc 643
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence Length = 247769 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 |||||||||||||||| ||||||| Sbjct: 9305 caaataaactaacaaacaaacaaa 9328
>dbj|AK015017.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921538N17 product:hypothetical TPR repeat containing protein, full insert sequence Length = 4126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 751 ggaacagcttcatcttcagg 732
>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213412 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 153108 caaataaacaaacaaataaacaaa 153131
>dbj|AK029952.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932410I19 product:hypothetical Tetratricopeptide repeat (TPR) structure containing protein, full insert sequence Length = 4187 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggaacagcttcatcttcagg 424 |||||||||||||||||||| Sbjct: 795 ggaacagcttcatcttcagg 776
>gb|AF119909.1|AF119909 Homo sapiens PRO2958 mRNA, complete cds Length = 1857 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaa 47 |||||||||||||||||||| Sbjct: 226 caaataaactaacaaataaa 245
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 34786769 ggcggcggccgccatggctg 34786750
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 26327501 ggcggcggccgccatggctg 26327482
>gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete genome Length = 10855 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 catgcgcgtggtggtggtgg 397 |||||||||||||||||||| Sbjct: 1125 catgcgcgtggtggtggtgg 1106
>gb|AC007738.2|AC007738 Homo sapiens BAC clone RP11-32P22 from 2, complete sequence Length = 183438 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaa 47 |||||||||||||||||||| Sbjct: 138855 caaataaactaacaaataaa 138874
>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence Length = 250707 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 77999 caaataaacaaacaaataaacaaa 77976 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 77987 caaataaacaaacaaataaacaaa 77964 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 77975 caaataaacaaacaaataaacaaa 77952 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 77963 caaataaacaaacaaataaacaaa 77940
>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence Length = 173058 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 83397 caaataaacaaacaaataaacaaa 83374
>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 83934 caaataaacaaacaaataaacaaa 83957
>emb|BX664611.6| Mouse DNA sequence from clone RP24-201C13 on chromosome X, complete sequence Length = 59966 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 ctcgcaaataaactaacaaataaacaaa 51 ||||||||||||| |||||| ||||||| Sbjct: 41348 ctcgcaaataaacaaacaaacaaacaaa 41375
>dbj|AK120361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067O03, full insert sequence Length = 3399 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 135 ggcggcggccgccatggctg 116
>ref|XM_313005.2| Anopheles gambiae str. PEST ENSANGP00000020427 (ENSANGG00000017938), partial mRNA Length = 573 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 gaacagcttcatcttcaggc 425 |||||||||||||||||||| Sbjct: 78 gaacagcttcatcttcaggc 59
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 85268 caaataaacaaacaaataaacaaa 85245
>dbj|AK107890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E06, full insert sequence Length = 833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 126 ggcggcggccgccatggctg 107
>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence Length = 2386 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 2100 ggcggcggccgccatggctg 2119
>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 57 ggcggcggccgccatggctg 38
>emb|CT033816.7| Zebrafish DNA sequence from clone CH211-109N19 in linkage group 1, complete sequence Length = 166556 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 27 gcaaataaactaacaaataaacaaagca 54 ||||| |||| ||||||||||||||||| Sbjct: 117179 gcaaacaaacaaacaaataaacaaagca 117206
>emb|CR925717.8| Zebrafish DNA sequence from clone CH211-30B16 in linkage group 19, complete sequence Length = 103832 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaa 47 |||||||||||||||||||| Sbjct: 64157 caaataaactaacaaataaa 64138
>gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, complete sequence Length = 168119 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 110351 caaataaacaaacaaataaacaaa 110328
>emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7, complete sequence Length = 192578 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 125037 caaataaacaaacaaataaacaaa 125014
>emb|BX088709.6| Zebrafish DNA sequence from clone CH211-15J21 in linkage group 15, complete sequence Length = 156236 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 96984 caaataaacaaacaaataaacaaa 96961
>emb|BX323056.5| Zebrafish DNA sequence from clone DKEY-97O5 in linkage group 20, complete sequence Length = 134072 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaa 47 |||||||||||||||||||| Sbjct: 109314 caaataaactaacaaataaa 109295
>emb|BX005071.4| Zebrafish DNA sequence from clone CH211-139O14 in linkage group 7, complete sequence Length = 174225 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 115865 caaataaacaaacaaataaacaaa 115888
>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19, complete sequence Length = 147275 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||||||||| ||||||||||||| Sbjct: 77477 caaataaacttacaaataaacaaa 77454
>gb|AY105026.1| Zea mays PCO062519 mRNA sequence Length = 1503 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 219 tctagaatcggttcaggaggcccttgaaccag 250 ||||||| ||||||| ||||||||||| |||| Sbjct: 1086 tctagaaccggttcatgaggcccttgatccag 1055
>gb|AC124979.8| Mus musculus chromosome 3, clone RP24-117N14, complete sequence Length = 187567 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 60838 caaataaacaaacaaataaacaaa 60861
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 31971 ggcggcggccgccatggctg 31952
>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 Length = 1754 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 cagtacagggaacagattaa 162 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, complete sequence Length = 199667 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 172142 caaataaacaaacaaataaacaaa 172165
>emb|AL732517.20| Mouse DNA sequence from clone RP23-134K17 on chromosome 4, complete sequence Length = 139314 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 115179 caaataaacaaacaaataaacaaa 115156
>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence Length = 195034 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 93798 caaataaacaaacaaataaacaaa 93821
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 gtggtggtggtggaaacgtcggaa 408 ||||||||||||||||| |||||| Sbjct: 490189 gtggtggtggtggaaacttcggaa 490166
>emb|BX294380.7| Zebrafish DNA sequence from clone DKEY-58N10 in linkage group 3, complete sequence Length = 212685 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||||||||||||||| ||||||| Sbjct: 194008 caaataaactaacaaacaaacaaa 193985
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggcggcggccgccatggctg 304 |||||||||||||||||||| Sbjct: 26641759 ggcggcggccgccatggctg 26641740
>emb|BX000479.11| Mouse DNA sequence from clone RP23-139I16 on chromosome X, complete sequence Length = 145084 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aaactaacaaataaacaaag 52 |||||||||||||||||||| Sbjct: 88779 aaactaacaaataaacaaag 88760
>gb|AC140457.3| Mus musculus BAC clone RP23-15F7 from 12, complete sequence Length = 215722 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 88627 caaataaacaaacaaataaacaaa 88604
>gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complete sequence Length = 196413 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 158515 caaataaacaaacaaataaacaaa 158492
>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence Length = 195449 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 74400 caaataaacaaacaaataaacaaa 74377
>emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, complete sequence Length = 201929 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 100499 caaataaacgaacaaataaacaaa 100476
>emb|CR933002.7| Zebrafish DNA sequence from clone DKEY-246A18 in linkage group 1, complete sequence Length = 31933 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 13856 caaataaacaaacaaataaacaaa 13833
>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete sequence Length = 190475 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cctcgccaagcttcctagcc 343 |||||||||||||||||||| Sbjct: 20391 cctcgccaagcttcctagcc 20372
>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence Length = 212206 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 49997 caaataaacaaacaaataaacaaa 49974
>emb|AL603836.13| Mouse DNA sequence from clone RP23-56A14 on chromosome 7, complete sequence Length = 215366 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 21514 caaataaacaaacaaataaacaaa 21537
>emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chromosome 2, complete sequence Length = 154433 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 caaataaactaacaaataaacaaa 51 |||| ||||||||||||||||||| Sbjct: 137907 caaacaaactaacaaataaacaaa 137884
>emb|AL626786.11| Mouse DNA sequence from clone RP23-269L6 on chromosome X, complete sequence Length = 156879 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 caaataaactaacaaataaacaaa 51 ||||||||| |||||||||||||| Sbjct: 142251 caaataaacaaacaaataaacaaa 142274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,841,583 Number of Sequences: 3902068 Number of extensions: 3841583 Number of successful extensions: 101795 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101187 Number of HSP's gapped (non-prelim): 608 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
