Clone Name | rbart56f01 |
---|---|
Clone Library Name | barley_pub |
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 313 PLVRTSSESTVSCSGKAPEGAIPGPSP 393 P V S+E + C G +PE PGP+P Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484
>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase| type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase 9) (xlAC) Length = 1305 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1 Query: 466 PRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSMKQSTQNWY 323 P R + SSCS GESG + G G+ ++L ++ST NW+ Sbjct: 38 PSRRCKYSISSSCSSGESGVKKTG-GSGGARRQKKLPQLFERSTSNWW 84
>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)| Length = 2804 Score = 30.0 bits (66), Expect = 3.2 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = +2 Query: 146 MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 325 + R+LA++R PF +++ + T R LG N IA RT AM C + V S Sbjct: 1756 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1805 Query: 326 PVLSRLFHARG 358 +L+RL RG Sbjct: 1806 -ILARLDMQRG 1815
>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)| Length = 2798 Score = 30.0 bits (66), Expect = 3.2 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = +2 Query: 146 MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 325 + R+LA++R PF +++ + T R LG N IA RT AM C + V S Sbjct: 1750 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1799 Query: 326 PVLSRLFHARG 358 +L+RL RG Sbjct: 1800 -ILARLDMQRG 1809
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +3 Query: 351 LGESSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRD 473 + +S +R VPRPAR P++P + E+S+ ++ R RD Sbjct: 310 VSQSLQRPPKPKVPRPAR--PVTPAAKTEKSSEKKQSRHRD 348
>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) (HFH-1l) Length = 400 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/41 (39%), Positives = 19/41 (46%) Frame = +1 Query: 322 RTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXXNP 444 R S +TVS SG PE A PGP+ AA +P Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPAGTPQAAPAARSSPIARSP 251
>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low| density lipoprotein receptor defect B-complementing protein) Length = 980 Score = 28.9 bits (63), Expect = 7.2 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 102 SLSTIQRNHSQGNGLGGISGERRPC 28 +L T+ R H G G+G + GE + C Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,557,211 Number of Sequences: 219361 Number of extensions: 1460762 Number of successful extensions: 4284 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4276 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)