ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki... 30 2.5
2ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Aden... 30 3.2
3NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homo... 30 3.2
4NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SC... 30 3.2
5IF2_SYNEL (Q8DK04) Translation initiation factor IF-2 30 4.2
6FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear... 29 5.5
7COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component... 29 7.2

>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 313 PLVRTSSESTVSCSGKAPEGAIPGPSP 393
           P V  S+E  + C G +PE   PGP+P
Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484



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>ADCY9_XENLA (P98999) Adenylate cyclase type 9 (EC 4.6.1.1) (Adenylate cyclase|
           type IX) (ATP pyrophosphate-lyase 9) (Adenylyl cyclase
           9) (xlAC)
          Length = 1305

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 466 PRTRRLLADCSSCSRGESGSPRAGRGTDRESPLRELSPSMKQSTQNWY 323
           P  R   +  SSCS GESG  + G G+      ++L    ++ST NW+
Sbjct: 38  PSRRCKYSISSSCSSGESGVKKTG-GSGGARRQKKLPQLFERSTSNWW 84



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>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +2

Query: 146  MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 325
            + R+LA++R      PF +++  + T   R LG N IA    RT AM C +  V    S 
Sbjct: 1756 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1805

Query: 326  PVLSRLFHARG 358
             +L+RL   RG
Sbjct: 1806 -ILARLDMQRG 1815



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>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +2

Query: 146  MTRHLATLRES*LLPPFTRAWLNFFTLTFRALGRNHIASASARTIAMLCFN*TVGFPLSV 325
            + R+LA++R      PF +++  + T   R LG N IA    RT AM C +  V    S 
Sbjct: 1750 IVRYLASMR------PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS- 1799

Query: 326  PVLSRLFHARG 358
             +L+RL   RG
Sbjct: 1800 -ILARLDMQRG 1809



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>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2|
          Length = 957

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 351 LGESSRRGDSRSVPRPARGDPLSPREQLEQSANSRRVRGRD 473
           + +S +R     VPRPAR  P++P  + E+S+  ++ R RD
Sbjct: 310 VSQSLQRPPKPKVPRPAR--PVTPAAKTEKSSEKKQSRHRD 348



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>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1) (HFH-1l)
          Length = 400

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 322 RTSSESTVSCSGKAPEGAIPGPSPGRHAATXXXXXXXXXNP 444
           R S  +TVS SG  PE A PGP+    AA          +P
Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPAGTPQAAPAARSSPIARSP 251



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>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 102 SLSTIQRNHSQGNGLGGISGERRPC 28
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,557,211
Number of Sequences: 219361
Number of extensions: 1460762
Number of successful extensions: 4284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4276
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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