ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56e07 |
|---|---|
| Clone Library Name | barley_pub |
>NAC48_ORYSA (Q7F2L3) NAC domain-containing protein 48 (ONAC048)| Length = 303 Score = 85.5 bits (210), Expect = 6e-17 Identities = 50/82 (60%), Positives = 56/82 (68%), Gaps = 16/82 (19%) Frame = -2 Query: 470 RAHADSSCSEHVLTA--SCERPEVQSQPKISDWERTFASTAPGVNPAAGL--PAG----- 318 R HADSSCSE VL+ +CE VQSQPKIS+WERTFA+ P +NPAA + PAG Sbjct: 226 RLHADSSCSEQVLSPEFACE---VQSQPKISEWERTFATVGP-INPAASILDPAGSGGLG 281 Query: 317 -------DPLLQDILMYWGKPF 273 DPLLQDILMYWGKPF Sbjct: 282 GLGGGGSDPLLQDILMYWGKPF 303
>Y741_CHLMU (Q9PJT6) Hypothetical protein TC0741 precursor| Length = 1007 Score = 35.8 bits (81), Expect = 0.057 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Frame = +3 Query: 177 IDSGGSPESPRLISSLSRAQTTRTAAESDGFSERLAPVHE---DVLEERVAGRQPRRRVD 347 + GG+P P +++++ + T E+ G +ER P ++ D++ + + V Sbjct: 746 VGDGGTPSGPDILAAVRKHLDTVYPGENGGSTERPLPANQNLGDIIHDVEQNGSAKETVV 805 Query: 348 A--RGGGGERSLPVG 386 + RGGGG S P+G Sbjct: 806 SPYRGGGGNTSSPIG 820
>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)| (Cut-like 2) Length = 1424 Score = 34.7 bits (78), Expect = 0.13 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 223 SAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGA-VEANVRSQSEILG 396 S P P +P T SQ G P ++ SG PA +P L+P A V++ +R +G Sbjct: 660 SVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSPAAFVQSIIRKVKSEIG 718
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)| Length = 1201 Score = 31.6 bits (70), Expect = 1.1 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Frame = +1 Query: 73 PSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPG*FPLSAAPKPHVQP 252 P P P A S + HPTA+++ P PSHP LS P Sbjct: 977 PPRENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMG-----LP 1031 Query: 253 PSRTDSQKGLPQYMRMSWRSGSPA--GSPAAGLTPGAV 360 PSRT S S S SP+ GS A+G + ++ Sbjct: 1032 PSRTPSHPTATVLSTGSPPSESPSRTGSAASGSSDSSI 1069
>NAC2_ARATH (Q39013) NAC domain-containing protein 2 (ANAC002)| Length = 289 Score = 31.2 bits (69), Expect = 1.4 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 14/76 (18%) Frame = -2 Query: 458 DSSCSEHVLTASCERPEVQSQPKISDWERTFAST------------APGVNPAAGLPAGD 315 DSSCSE V++ EVQS+PK DW A N G + + Sbjct: 215 DSSCSEQVVSPEFTS-EVQSEPKWKDWSAVSNDNNNTLDFGFNYIDATVDNAFGGGGSSN 273 Query: 314 PL--LQDILMYWGKPF 273 + LQD+ MY KP+ Sbjct: 274 QMFPLQDMFMYMQKPY 289
>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC| 2.7.11.25) (NF-kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK) Length = 942 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = +1 Query: 37 HIHHDQVQYSLRPSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPG*F 216 H+ + LRP P L +LI+ ++ + HP AT P P+HP F Sbjct: 207 HLCFKKQDEGLRPVLPRPELHKLISPLQCLNHVWKLHHPQATG------PRPHPTHP--F 258 Query: 217 PLSAAPKP 240 P S P P Sbjct: 259 PYSGMPHP 266
>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing| protein 16) (Transcription factor MEL1) Length = 1276 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +1 Query: 184 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGL 345 PA P PG FP S P+P + PP+ P + SP G+PA L Sbjct: 508 PALTPGFPGIFPPSLYPRPPLLPPTPLLKS---PLNHTQDAKLPSPLGNPALPL 558
>EPHAA_HUMAN (Q5JZY3) Ephrin type-A receptor 10 precursor (EC 2.7.10.1)| Length = 1008 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 283 PQYMRMSWRSGSPAGSPAAGLTPGAVEANVRSQSE 387 PQ + +SWR PAG+P A T + + QSE Sbjct: 467 PQSVSLSWREPIPAGAPGANDTEYEIRYYEKGQSE 501
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 30.0 bits (66), Expect = 3.1 Identities = 26/84 (30%), Positives = 33/84 (39%) Frame = +1 Query: 217 PLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVEANVRSQSEILG 396 P AP P PP T S P + G P+ PAAG+ P A A + LG Sbjct: 259 PFGTAPMPPGPPPPGTVSPPLPPSAPAVG--VGGPS-VPAAGMPPAAAAATAPLSPQSLG 315 Query: 397 WLCTSGRSHDAVSTCSEQLESACA 468 T+G + + Q SA A Sbjct: 316 QSFTTGMTTGTPAAAGAQALSAGA 339
>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I| Length = 962 Score = 29.6 bits (65), Expect = 4.1 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 19/105 (18%) Frame = +1 Query: 214 FPLSAAPK---PHVQPPSR---------TDSQKGLPQYMRMSWRSG-------SPAGSPA 336 FPL P+ P +Q PS TDS G P Y + R GSP Sbjct: 598 FPLEPPPESPGPSLQIPSNNPVYTNLTDTDSMMGAPDYFSIPARQNRNRKPHTEVVGSPT 657 Query: 337 AGLTPGAVEANVRSQSEILGWLCTSGRSHDAVSTCSEQLESACAR 471 T + V + +G L GRS + S ++ ++++ R Sbjct: 658 VVRTKEIIPPKVTREGSFMGRLKKLGRSKSSKSLQTDFMKASVER 702
>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin| inhibitor) (CAIN) Length = 2182 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +2 Query: 32 KSIYTMTKYSTLCVPPRTHRGSRVSSPPSVTPCTLLIPFIQRLRVSAV 175 +S+ M + T C PPR G R+ P LL P I VS V Sbjct: 275 ESLLAMYNHLTTCEPPRPSLGKRIDLSDYQDPSQLLAPSIVVTPVSVV 322
>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 956 Score = 29.6 bits (65), Expect = 4.1 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%) Frame = +1 Query: 73 PSSNTPGLPRLIAAVRDSLYTIDT-----------FHPTATSICCR*IPAARPSHPG*FP 219 P++ +P I R +LYT +T P S C A+ SHP Sbjct: 665 PNNGQISVPPAIMNPRTALYTANTKVAFSAVSSVPVGPLQGSFCANSNTASPSSHPSTSF 724 Query: 220 LSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVEAN 369 S A P PS + + +P+ S+ SG AGS + G P + +++ Sbjct: 725 ASMASLPSCPAPSSSPALSSVPE---SSFYSGG-AGSSSPGNIPASSQSH 770
>CBPA_DICDI (P35085) Calcium-binding protein| Length = 467 Score = 29.6 bits (65), Expect = 4.1 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = +1 Query: 184 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 354 P +P PG +P +P PP Q+G+ + + G P P G PG Sbjct: 167 PPQQPGQPGAYPPQQPGQPGAYPP-----QQGVQNTLAKTGAPGQPGVPPPQGAYPG 218
>S39A6_MOUSE (Q8C145) Zinc transporter SLC39A6 precursor (Solute carrier family| 39 member 6) (Endoplamic reticulum membrane-linked protein) (Ermelin) Length = 765 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = +2 Query: 74 PPRTHRGSRVSSPPSVTPCTLLIPFIQRLRVSAVDRFRRLARVTPVDFLSQPRPNHTYSR 253 P R + S+PPS+T S V R RLAR + +S+PR + YSR Sbjct: 217 PGRRTKDVNPSTPPSIT------------EKSRVGRLSRLARKKSNESVSEPRKSFMYSR 264 Query: 254 RVGRILRKACPST 292 +++ +T Sbjct: 265 NTNDNIQECFNTT 277
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +1 Query: 187 AARPSHPG*F--PLSAAPKPHVQ-PPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 354 AA PS P F P + P PPS DS Y+ S SGS +GS + L PG Sbjct: 420 AAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 478
>RNFC_HAEDU (Q7VNT4) Electron transport complex protein rnfC| Length = 702 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +3 Query: 195 PESPRLISSLSRAQTTRTAAESDGFSERLAPVHEDVLEERVAGRQPRRRVDAR 353 P + ++L+RA+ +TA ++DG + +AP +E + A R AR Sbjct: 566 PRKAAVAAALARAKAKKTAQQADGLAAEVAPENEIADPRKAAVAAALARAKAR 618
>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1| precursor (Down syndrome cell adhesion molecule 2) Length = 2053 Score = 29.3 bits (64), Expect = 5.3 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Frame = +1 Query: 1 PNQSHIHSLVQIHIHHDQVQY-SLRPSSNTPGLPRLIAAVRDSLYTIDT---FHPTATSI 168 P ++ I +L + + H Q ++ +L P+S + GLP A S T+ P + Sbjct: 1925 PREASIRNLARTY--HTQARHLTLDPASKSLGLPHPGAPAAASTATLPQRTLAMPAPPAG 1982 Query: 169 CCR*IPAARPSHPG*FPLSAAPKPHVQPP 255 P P+ P P +A P P +PP Sbjct: 1983 TAPPAPGPTPAEPPTAPSAAPPAPSTEPP 2011
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Frame = +1 Query: 184 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAG-LTPGAV 360 P P PG P A P P PP+ Q P + + PAG P G +PG Sbjct: 399 PPPGPPPPGPAPPGARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPPGPPSPGPA 458 Query: 361 EANVR 375 R Sbjct: 459 PPGAR 463
>PERL_HUMAN (P22079) Lactoperoxidase precursor (EC 1.11.1.7) (LPO) (Salivary| peroxidase) (SPO) Length = 712 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = +3 Query: 216 SSLSRAQTTRTAAESDGFSERLAPVHEDVLEER 314 +S +RAQTTRT+A SD S+ V++ L+ R Sbjct: 21 ASTTRAQTTRTSAISDTVSQAKVQVNKAFLDSR 53
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 28.9 bits (63), Expect = 6.9 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = +1 Query: 184 PAARPSHPG*FPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWR--SGSPAGSPAAGLTPGA 357 P +P P S +PKP +P R GLP R R +G G+P G P A Sbjct: 164 PKPKPGAP-----SKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNNPFA 218
>KS6A4_MOUSE (Q9Z2B9) Ribosomal protein S6 kinase alpha-4 (EC 2.7.11.1) (Nuclear| mitogen-and stress-activated protein kinase 2) (90 kDa ribosomal protein S6 kinase 4) (RSK-like protein kinase) (RLSK) Length = 773 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = -2 Query: 416 RPEVQSQPKISDWERTFASTAPGVNPAAGLPAGDP 312 RP+++S+ + ++ F P +PA P GDP Sbjct: 319 RPQIRSELDVGNFAEEFTRLEPVYSPAGSPPPGDP 353
>DL_DROME (P10041) Neurogenic locus protein delta precursor| Length = 833 Score = 28.5 bits (62), Expect = 9.1 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Frame = +1 Query: 244 VQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLT---PGAVEA---NVRSQSEILGWLC 405 V P R SQK L + R GSPAGS A G + PGA E +V + Sbjct: 732 VAPLQRAKSQKQLNTDPTLMHR-GSPAGSSAKGASGGGPGAAEGKRISVLGEGSYCSQRW 790 Query: 406 TSGRSHDAVSTCSEQLESACA 468 S + CS QL +A + Sbjct: 791 PSLAAAGVAGACSSQLMAAAS 811
>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)| Length = 348 Score = 28.5 bits (62), Expect = 9.1 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Frame = +1 Query: 202 HPG*FPLSAAPKPHVQPPSRTDSQKGL-PQYMRMSWRSGSPAGSPAAGLTPGAVEANVRS 378 HPG F P P PP+ ++ G P + +G+P G AAG+ G A Sbjct: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGG-AAGMAAGFPYA---- 207 Query: 379 QSEILGWLCTSGRSHDAVSTCS 444 LG+ S ++ST S Sbjct: 208 LRAYLGYQAVPSGSSGSLSTSS 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,609,165 Number of Sequences: 219361 Number of extensions: 1492659 Number of successful extensions: 5865 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5492 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5856 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
