ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX677665.17| Zebrafish DNA sequence from clone DKEY-25M3 in ... 42 0.59
2gb|AC093871.3| Homo sapiens BAC clone RP11-608B3 from 4, complet... 40 2.3
3gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, comp... 38 9.2
4gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, co... 38 9.2
5gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 9.2
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.2
7gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.2
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
9gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 38 9.2

>emb|BX677665.17| Zebrafish DNA sequence from clone DKEY-25M3 in linkage group 12, complete
              sequence
          Length = 136144

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 12     gctgaatcatacaaattgctggttt 36
              ||||||||||||| |||||||||||
Sbjct: 133793 gctgaatcatacacattgctggttt 133817



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>gb|AC093871.3| Homo sapiens BAC clone RP11-608B3 from 4, complete sequence
          Length = 167818

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     gaaccaagctgaatcatacaaatt 28
             |||||||||||||||| |||||||
Sbjct: 24827 gaaccaagctgaatcaaacaaatt 24804



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>gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, complete sequence
          Length = 210441

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 152   atgcattatgatgctataacaag 174
             ||||||||||||||| |||||||
Sbjct: 32694 atgcattatgatgctgtaacaag 32716



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>gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, complete sequence
          Length = 192916

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 152   atgcattatgatgctataacaag 174
             ||||||||||||||| |||||||
Sbjct: 52851 atgcattatgatgctgtaacaag 52829



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 24      aaattgctggtttagtacc 42
               |||||||||||||||||||
Sbjct: 1862748 aaattgctggtttagtacc 1862730



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 51      ctacctacctagatagcttagct 73
               |||||||||||| ||||||||||
Sbjct: 3166734 ctacctacctagctagcttagct 3166756



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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 51    ctacctacctagatagcttagct 73
             |||||||||||| ||||||||||
Sbjct: 89747 ctacctacctagctagcttagct 89769



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 51      ctacctacctagatagcttagct 73
               |||||||||||| ||||||||||
Sbjct: 3166845 ctacctacctagctagcttagct 3166867



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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   cattatgatgctataacaa 173
             |||||||||||||||||||
Sbjct: 63181 cattatgatgctataacaa 63199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,512,602
Number of Sequences: 3902068
Number of extensions: 1512602
Number of successful extensions: 95792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95682
Number of HSP's gapped (non-prelim): 110
length of query: 186
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 164
effective length of database: 17,147,199,772
effective search space: 2812140762608
effective search space used: 2812140762608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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