Clone Name | rbart56e04 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b) | 32 | 0.36 | 2 | HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3) | 28 | 4.0 | 3 | MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... | 28 | 6.9 | 4 | ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1 | 27 | 9.0 |
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>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)| Length = 303 Score = 32.0 bits (71), Expect = 0.36 Identities = 13/16 (81%), Positives = 15/16 (93%) Frame = -3 Query: 397 VACKSCTKTFNSEVAL 350 V CKSC+KTFNSE+AL Sbjct: 277 VPCKSCSKTFNSEMAL 292
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -3 Query: 391 CKSCTKTFNSEVALAS 344 CKSCT+TF SE+ L S Sbjct: 269 CKSCTRTFTSEMGLQS 284
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1734 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 277 QPTNIP-LSSPLLFTWPRAWPWRAKLEQ 357 QP ++P L+ PLL + WPW ++ EQ Sbjct: 1641 QPPSVPGLTHPLLEVPSQNWPWESECEQ 1668
>ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1| Length = 422 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +1 Query: 262 LTQPSQPTNIPLSSPLLFT--WPRAWPWRAKLEQ 357 L +P+ P + L T W RAWPW+ L++ Sbjct: 160 LPRPAGPARRQFQAASLLTRGWGRAWPWKQILKE 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,774,232 Number of Sequences: 219361 Number of extensions: 931080 Number of successful extensions: 1860 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1860 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)