ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b) 32 0.36
2HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3) 28 4.0
3MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-pro... 28 6.9
4ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1 27 9.0

>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)|
          Length = 303

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -3

Query: 397 VACKSCTKTFNSEVAL 350
           V CKSC+KTFNSE+AL
Sbjct: 277 VPCKSCSKTFNSEMAL 292



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>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 391 CKSCTKTFNSEVALAS 344
           CKSCT+TF SE+ L S
Sbjct: 269 CKSCTRTFTSEMGLQS 284



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>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1734

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 277  QPTNIP-LSSPLLFTWPRAWPWRAKLEQ 357
            QP ++P L+ PLL    + WPW ++ EQ
Sbjct: 1641 QPPSVPGLTHPLLEVPSQNWPWESECEQ 1668



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>ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1|
          Length = 422

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 262 LTQPSQPTNIPLSSPLLFT--WPRAWPWRAKLEQ 357
           L +P+ P      +  L T  W RAWPW+  L++
Sbjct: 160 LPRPAGPARRQFQAASLLTRGWGRAWPWKQILKE 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,774,232
Number of Sequences: 219361
Number of extensions: 931080
Number of successful extensions: 1860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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