Clone Name | rbart56e04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 gggcaagaacacatcaatcaaaata 257 ||||||||||||||||||| ||||| Sbjct: 67495 gggcaagaacacatcaatctaaata 67471
>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence Length = 212061 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 aacccagccagccaaccaaca 289 ||||||||||||||||||||| Sbjct: 80204 aacccagccagccaaccaaca 80224
>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence Length = 204108 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 caacccagccagccaaccaac 288 ||||||||||||||||||||| Sbjct: 128872 caacccagccagccaaccaac 128852
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 gggcaagaacacatcaatcaaaata 257 ||||||||||||||||||| ||||| Sbjct: 6396101 gggcaagaacacatcaatctaaata 6396077
>dbj|AK098699.1| Homo sapiens cDNA FLJ25833 fis, clone TST08193 Length = 1406 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 acatgattcattcattcaaag 36 ||||||||||||||||||||| Sbjct: 703 acatgattcattcattcaaag 723
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence Length = 180221 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 acatgattcattcattcaaag 36 ||||||||||||||||||||| Sbjct: 57985 acatgattcattcattcaaag 58005
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 gggcaagaacacatcaatcaaaata 257 ||||||||||||||||||| ||||| Sbjct: 6462568 gggcaagaacacatcaatctaaata 6462544
>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence Length = 165774 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 aacccagccagccaaccaac 288 |||||||||||||||||||| Sbjct: 119896 aacccagccagccaaccaac 119915
>emb|CR388052.29| Zebrafish DNA sequence from clone CH211-178J18 in linkage group 8, complete sequence Length = 162276 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 acaccacatgattcattcattcaa 34 |||||| ||||||||||||||||| Sbjct: 75886 acaccatatgattcattcattcaa 75863
>emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12 on chromosome 1q24-25 Contains a glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)(GOT2) pseudogene, a novel gene and the TNFSF4 gene for tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa), complete sequence Length = 147724 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcccttccctcaggctcagg 160 |||||||||||||||||||| Sbjct: 53007 tcccttccctcaggctcagg 53026
>ref|XM_687626.1| PREDICTED: Danio rerio Mcph1 protein (Mcph1), mRNA Length = 1266 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 ccaaaacaccacatgattcattca 29 ||||||||||||||||| |||||| Sbjct: 1244 ccaaaacaccacatgatccattca 1221
>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence Length = 228458 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 aacccagccagccaaccaac 288 |||||||||||||||||||| Sbjct: 219039 aacccagccagccaaccaac 219058
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 caagaacacatcaatcaaaa 255 |||||||||||||||||||| Sbjct: 38831836 caagaacacatcaatcaaaa 38831855
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 caagaacacatcaatcaaaa 255 |||||||||||||||||||| Sbjct: 104718 caagaacacatcaatcaaaa 104737
>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence Length = 176340 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 acatagataatagataggta 199 |||||||||||||||||||| Sbjct: 35152 acatagataatagataggta 35133
>emb|CR848051.16| Zebrafish DNA sequence from clone DKEY-67K15 in linkage group 3, complete sequence Length = 131370 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ccacatgattcattcattca 33 |||||||||||||||||||| Sbjct: 100336 ccacatgattcattcattca 100317
>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10, complete sequence Length = 148044 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tcaacccagccagccaacca 286 |||||||||||||||||||| Sbjct: 140787 tcaacccagccagccaacca 140768 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,345,774 Number of Sequences: 3902068 Number of extensions: 3345774 Number of successful extensions: 98323 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98221 Number of HSP's gapped (non-prelim): 102 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)