ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
2gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 42 1.4
3gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, co... 42 1.4
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
5dbj|AK098699.1| Homo sapiens cDNA FLJ25833 fis, clone TST08193 42 1.4
6gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2,... 42 1.4
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
8gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, co... 40 5.3
9emb|CR388052.29| Zebrafish DNA sequence from clone CH211-178J18 ... 40 5.3
10emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12... 40 5.3
11ref|XM_687626.1| PREDICTED: Danio rerio Mcph1 protein (Mcph1), mRNA 40 5.3
12gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, com... 40 5.3
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
14dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
15gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, co... 40 5.3
16emb|CR848051.16| Zebrafish DNA sequence from clone DKEY-67K15 in... 40 5.3
17emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in... 40 5.3

>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C16, complete sequence
          Length = 137872

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 233   gggcaagaacacatcaatcaaaata 257
             ||||||||||||||||||| |||||
Sbjct: 67495 gggcaagaacacatcaatctaaata 67471



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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   aacccagccagccaaccaaca 289
             |||||||||||||||||||||
Sbjct: 80204 aacccagccagccaaccaaca 80224



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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 268    caacccagccagccaaccaac 288
              |||||||||||||||||||||
Sbjct: 128872 caacccagccagccaaccaac 128852



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 233     gggcaagaacacatcaatcaaaata 257
               ||||||||||||||||||| |||||
Sbjct: 6396101 gggcaagaacacatcaatctaaata 6396077



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>dbj|AK098699.1| Homo sapiens cDNA FLJ25833 fis, clone TST08193
          Length = 1406

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 16  acatgattcattcattcaaag 36
           |||||||||||||||||||||
Sbjct: 703 acatgattcattcattcaaag 723



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>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence
          Length = 180221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    acatgattcattcattcaaag 36
             |||||||||||||||||||||
Sbjct: 57985 acatgattcattcattcaaag 58005



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 233     gggcaagaacacatcaatcaaaata 257
               ||||||||||||||||||| |||||
Sbjct: 6462568 gggcaagaacacatcaatctaaata 6462544



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>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence
          Length = 165774

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    aacccagccagccaaccaac 288
              ||||||||||||||||||||
Sbjct: 119896 aacccagccagccaaccaac 119915



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>emb|CR388052.29| Zebrafish DNA sequence from clone CH211-178J18 in linkage group 8,
             complete sequence
          Length = 162276

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    acaccacatgattcattcattcaa 34
             |||||| |||||||||||||||||
Sbjct: 75886 acaccatatgattcattcattcaa 75863



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>emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12 on chromosome 1q24-25 Contains
             a glutamic-oxaloacetic transaminase 2, mitochondrial
             (aspartate aminotransferase 2)(GOT2) pseudogene, a novel
             gene and the TNFSF4 gene for tumor necrosis factor
             (ligand) superfamily, member 4 (tax-transcriptionally
             activated glycoprotein 1, 34kDa), complete sequence
          Length = 147724

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tcccttccctcaggctcagg 160
             ||||||||||||||||||||
Sbjct: 53007 tcccttccctcaggctcagg 53026



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>ref|XM_687626.1| PREDICTED: Danio rerio Mcph1 protein (Mcph1), mRNA
          Length = 1266

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 6    ccaaaacaccacatgattcattca 29
            ||||||||||||||||| ||||||
Sbjct: 1244 ccaaaacaccacatgatccattca 1221



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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    aacccagccagccaaccaac 288
              ||||||||||||||||||||
Sbjct: 219039 aacccagccagccaaccaac 219058



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 236      caagaacacatcaatcaaaa 255
                ||||||||||||||||||||
Sbjct: 38831836 caagaacacatcaatcaaaa 38831855



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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    caagaacacatcaatcaaaa 255
              ||||||||||||||||||||
Sbjct: 104718 caagaacacatcaatcaaaa 104737



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>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence
          Length = 176340

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   acatagataatagataggta 199
             ||||||||||||||||||||
Sbjct: 35152 acatagataatagataggta 35133



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>emb|CR848051.16| Zebrafish DNA sequence from clone DKEY-67K15 in linkage group 3, complete
              sequence
          Length = 131370

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ccacatgattcattcattca 33
              ||||||||||||||||||||
Sbjct: 100336 ccacatgattcattcattca 100317



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>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10,
              complete sequence
          Length = 148044

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    tcaacccagccagccaacca 286
              ||||||||||||||||||||
Sbjct: 140787 tcaacccagccagccaacca 140768


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,345,774
Number of Sequences: 3902068
Number of extensions: 3345774
Number of successful extensions: 98323
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98221
Number of HSP's gapped (non-prelim): 102
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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