>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 68.2 bits (165), Expect = 5e-12
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
 Frame = -2

Query: 382 FDEQIANYPGANILASFTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHS--RNQ 209
           F+ Q +NYPG  +L SF+T  +    P +    AC  L++QGKL+GIFVW+AD S   N 
Sbjct: 202 FEMQRSNYPGGKVLVSFSTDNSGGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSND 261

Query: 208 GFKYETQSQALL 173
            FKYE Q+Q+LL
Sbjct: 262 VFKYEMQAQSLL 273

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = -2

Query: 382 FDEQIANYPGANILASFTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHS--RNQ 209
           F+EQ +NY G  +L SF+T ++    P +    AC  L++QGKL+GIFVW+AD S   N 
Sbjct: 228 FEEQSSNYHGGKVLVSFSTDSSGGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNN 287

Query: 208 GFKYETQSQALLTDATA 158
            F+YE Q+Q++L    +
Sbjct: 288 VFRYEMQAQSMLASVNS 304

>VL2_HPV2A (P25487) Minor capsid protein L2|
          Length = 524

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 233 PDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           PD D +++  L +   +++RG  R   +GRR   R  +G+ +G+RV
Sbjct: 330 PDPDFLDIVALHRPALTSRRGTVRFSRLGRRATLRTRSGKQIGARV 375

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa|
            1-like protein 1)
          Length = 1859

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +2

Query: 155  VSGGISQQGLRLCLVLESLVPGMVCSPDKDAVELA------LLLQSPASTKRGVDRHRGI 316
            VSG   ++   L  +L+S   G   S +++A+E+A      +L Q    T +G D  +G+
Sbjct: 1552 VSGAPVRKAFDLQQILQSKKGG---SSNREAMEVAPQRTGRMLSQEDLGTVQGADEKQGL 1608

Query: 317  GRRRGEAGQ 343
            G   GE G+
Sbjct: 1609 GVAEGEEGE 1617

>GYRB_BUCAI (P57126) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 803

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 24  YALLLRKNRAR*TIRPTIKI--YAHFIPYDFTHKSIYS 131
           Y++ +++N  +    PTIKI  YAH+  YDF  + + S
Sbjct: 646 YSIEIKENLDKNIFEPTIKISRYAHYTKYDFKEEFLKS 683

>CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic and hepatic|
           tumor over-expressed protein) (Ch-TOG protein)
          Length = 2032

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 269 QSPASTKRGVDRHRGIGRRRGEAGQ--DVGSRVVGDLL 376
           QSP +  RG+ +H   G   GE G   D GS  V DLL
Sbjct: 815 QSPPAPTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLL 852

>VL2_HPV27 (P36755) Minor capsid protein L2|
          Length = 464

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 233 PDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           PD D +++  L +   ++++G  R   +GRR   R  +G+ +G+RV
Sbjct: 273 PDPDFLDIVALHRPALTSRQGTVRFSRLGRRATLRTRSGKQIGARV 318

>VL2_HPV58 (P26538) Minor capsid protein L2|
          Length = 472

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +2

Query: 230 SPDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           +PD D +++  L +   +++RG  R+  +G++   R  +G+ +G++V
Sbjct: 276 APDPDFLDIVALHRPALTSRRGTVRYSRVGQKATLRTRSGKQIGAKV 322

>B4GT2_CRIGR (Q80WN9) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 2) [Includes: L
          Length = 369

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 264 SRASSTASLSGLQTIPGTKDSSTRHSRRPC*LMPP 160
           SR ++TAS SGL  +P  +   T     PC  +PP
Sbjct: 65  SRPNATASSSGLPEVPSARPGPTAPVIPPCPDVPP 99

>MAGAB_HUMAN (P43364) Melanoma-associated antigen 11 (MAGE-11 antigen)|
          Length = 429

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 3   HDKIKALYALLLRKNRAR*TIR------PTIKIYAHFIPYDFTHKSIYSNLETGIN**AV 164
           HDKI  L  LLLRK R +  I         IK Y  + P  F   S+   L  GI+   V
Sbjct: 223 HDKIIDLVHLLLRKYRVKGLITKAEMLGSVIKNYEDYFPEIFREASVCMQLLFGIDVKEV 282

Query: 165 ASVNRACDCVSYLN 206
              + +   V+ LN
Sbjct: 283 DPTSHSYVLVTSLN 296

>DXR_NOCFA (Q5YS72) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 394

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 358 PGANILASFTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHSRNQ 209
           PGA     F+TA+T T  PVDT +     L  Q    G  V A  ++ N+
Sbjct: 288 PGAAAACDFSTASTWTFEPVDTEVFPAVELARQAGQAGGSVTAVYNAANE 337

>GRIP1_RAT (P97879) Glutamate receptor-interacting protein 1 (GRIP1 protein)|
           (AMPA receptor-interacting protein GRIP1)
          Length = 1112

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 197 VLESLVPGM----VCSPDKDAVELALLLQSPASTKRGVDRHRGIGRRRGEAGQDVGSRVV 364
           V ES++P      V  P K +VEL + + SP+S K G D       ++G      G+  +
Sbjct: 560 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLEL 618

Query: 365 GDLLV 379
           GD L+
Sbjct: 619 GDKLL 623

>VL2_HPV61 (Q80953) Minor capsid protein L2|
          Length = 459

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 215 PGMVCSPDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           P +   PD D +++  L +   ++++G  R   +G+R   R  +G+ +G+RV
Sbjct: 264 PSIYTPPDPDFLDIVSLHRPALTSRQGTVRFSRLGQRATLRTRSGRRIGARV 315

>VL2_HPV62 (Q676U7) Minor capsid protein L2|
          Length = 475

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 215 PGMVCSPDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           P +   PD D +++  L +   ++++G  R   +G+R   R  +G+ +G+RV
Sbjct: 270 PSIYTPPDPDFLDIVTLHRPALTSRQGTVRLSRVGQRASLRTRSGKRIGARV 321

>ATG2_MAGGR (Q51ZN8) Autophagy-related protein 2|
          Length = 2077

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 276 GLCRSRASSTASLSGLQTIPGTKDS--STRHSRRPC*LMPP 160
           GL  S+ASST    GL+T PG   S  S +    P  ++PP
Sbjct: 512 GLEDSQASSTIGFQGLKTSPGLDASTISEQSDSSPAPIIPP 552

>GRIP1_MOUSE (Q925T6) Glutamate receptor-interacting protein 1 (GRIP1 protein)|
          Length = 1127

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 197 VLESLVPGM----VCSPDKDAVELALLLQSPASTKRGVDRHRGIGRRRGEAGQDVGSRVV 364
           V ES++P      V  P K +VEL + + SP+S K G D       ++G      G+  +
Sbjct: 560 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLEL 618

Query: 365 GDLLV 379
           GD L+
Sbjct: 619 GDKLL 623

>VL2_HPV03 (P36744) Minor capsid protein L2|
          Length = 473

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +2

Query: 233 PDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           PD D +++  L +   +++RG  R+  +G++   R  +G+ +G+RV
Sbjct: 276 PDSDFLDILRLHRPALTSRRGTVRYSRVGQKLSMRTRSGKGLGARV 321

>VL2_HPV51 (P26539) Minor capsid protein L2|
          Length = 468

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 230 SPDKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 361
           +PD D +++  L +   +++RG  R   +G++   R  +G+ +G+RV
Sbjct: 273 APDPDFLDIITLHRPALTSRRGTVRFSRLGQKATMRTRSGKQIGARV 319

>B4GT2_HUMAN (O60909) Beta-1,4-galactosyltransferase 2 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 2) [Includes: L
          Length = 372

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 264 SRASSTASLSGLQTIPGTKDSSTRHSRRPC*LMPP 160
           SR ++TAS SGL  +P      T  +  PC   PP
Sbjct: 68  SRPNATASSSGLPEVPSALPGPTAPTLPPCPDSPP 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,880,970
Number of Sequences: 219361
Number of extensions: 979938
Number of successful extensions: 2435
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)