ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56e02 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 132 bits (333), Expect = 4e-31 Identities = 60/72 (83%), Positives = 70/72 (97%) Frame = -2 Query: 495 LTALMDVERRHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSD 316 LT+LMDVERRHGKFKPVIKKAMVEL+ APFKKFAS+R+EWA+KNRY+SPGPIQF GPGSD Sbjct: 479 LTSLMDVERRHGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRYVSPGPIQFMGPGSD 538 Query: 315 ASNHTLMLELGA 280 A++HTL+LELG+ Sbjct: 539 AASHTLLLELGS 550
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 122 bits (306), Expect = 5e-28 Identities = 57/73 (78%), Positives = 65/73 (89%) Frame = -2 Query: 495 LTALMDVERRHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSD 316 LTALMDVERRHGKFKPVIKKAMVEL+ APFKKFAS R+EWA+ NRYI+PGPIQF GP ++ Sbjct: 479 LTALMDVERRHGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVAN 538 Query: 315 ASNHTLMLELGAE 277 NHTL+LELG + Sbjct: 539 KVNHTLLLELGVD 551
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = -2 Query: 453 KPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 289 KP I A V+L ++ ++ + + Y +PGP+QF GPG+DA TL +E Sbjct: 504 KPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVE 558
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = -2 Query: 450 PVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 289 P + A V+L ++ + ++ + + Y +PGP+QF GPG+DA +L++E Sbjct: 505 PALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558
>Y2348_MYCLE (Q49929) Hypothetical glycosyl transferase ML2348 (EC 2.-.-.-)| Length = 421 Score = 37.4 bits (85), Expect = 0.022 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Frame = +1 Query: 193 WEVCSPLSKLQGTRRKFQRDALYIRSLYLGAELQHQGVV-RGVASRAAELDGTGADVSVL 369 W++ P+ LQ R+ + A ++SL GA+L GVV +GV + AE G V Sbjct: 73 WKILPPIKALQQLRQAWADMATDLKSLADGADLVMTGVVYQGVVANVAEYYGIPFGVL-- 130 Query: 370 DGPFIPHR--GKLLKWRSIKLNHSLL-----DHWLELAMPPLNIHQR 489 F+P R GK++ LN ++L HWL LA P + +R Sbjct: 131 --HFVPARVNGKIIPSLPSPLNRAILATVWRAHWL-LAKKPEDAQRR 174
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 33.1 bits (74), Expect = 0.41 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +2 Query: 233 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 400 +E K ST+ALYI AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTTALYIIAPTLALTIALLLWTPLPMPNPLINLNLGLL--FILATSSLTVYS 115 Query: 401 FL-NGAASSSTIAFL 442 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_PANTR (Q9T9W3) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +2 Query: 233 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 400 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 401 FL-NGAASSSTIAFL 442 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_HUMAN (P03886) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +2 Query: 233 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 400 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 401 FL-NGAASSSTIAFL 442 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +2 Query: 233 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 400 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 401 FL-NGAASSSTIAFL 442 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_LEMCA (O78696) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +2 Query: 233 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 400 +E + + S+S+LY AP+ + + W LP PL M GL+ F++A SS + Sbjct: 58 KEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLINMNMGLL--FILATSSLAVYS 115 Query: 401 FL-NGAASSSTIAFL 442 L +G AS+S A + Sbjct: 116 ILWSGWASNSKYALI 130
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 6.0 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +1 Query: 358 VSVLDGPFIPHRGKLLKWRSI 420 V +LD PF+ ++GK+++WR + Sbjct: 3328 VWILDNPFMQNKGKVMEWRDV 3348 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,139,161 Number of Sequences: 219361 Number of extensions: 1438379 Number of successful extensions: 4613 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4613 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
