ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute... 33 0.26
2S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute c... 31 0.75
3S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute... 30 2.2
4PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase ... 29 2.8
5SYE_SULTO (Q971D0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 4.9
6POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein V... 28 4.9
7POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein V... 28 4.9
8SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 28 8.3

>S26A1_MOUSE (P58735) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 704

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 33  GQIHRFYTSKLTGSIVTGFTAPQTDGP 113
           GQ+H  + S++ G+I TGF APQ   P
Sbjct: 314 GQLHTRFDSRVAGNIPTGFVAPQVPDP 340



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>S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1) (Canalicular sulfate transporter)
           (Sulfate/carbonate antiporter)
          Length = 703

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 33  GQIHRFYTSKLTGSIVTGFTAPQTDGP 113
           GQ+H  + S + G+I TGF APQ   P
Sbjct: 313 GQLHTRFGSSVAGNIPTGFVAPQIPDP 339



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>S26A1_HUMAN (Q9H2B4) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1)
          Length = 701

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  GQIHRFYTSKLTGSIVTGFTAPQTDGP 113
           GQ+H+ + S + G I TGF  PQ   P
Sbjct: 309 GQLHKRFGSSVAGDIPTGFMPPQVPEP 335



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>PAFA2_HUMAN (Q99487) Platelet-activating factor acetylhydrolase 2, cytoplasmic|
           (EC 3.1.1.47) (Serine-dependent phospholipase A2)
           (HSD-PLA2)
          Length = 392

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 33  GQIHRFYT--SKLTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKLKRLMTGSKGKRD 194
           G +HR  T  + +TG+++  F + +T G +DP  G +  +++ L  L      K D
Sbjct: 311 GSVHRSQTDFAFVTGNLIGKFFSTETRGSLDPYEGQEVMVRAMLAFLQKHLDLKED 366



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>SYE_SULTO (Q971D0) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 566

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 60  KLTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKLKRLMTG 176
           K+ G  VT F AP  DGPI  GN   + I  K   +  G
Sbjct: 94  KVEGKFVTRF-APNPDGPIHLGNARAAIISYKYAEMYKG 131



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>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 224  PPPARPSVWSIAFPLASSHESFKFALN 144
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 224  PPPARPSVWSIAFPLASSHESFKFALN 144
            PPPA P+V     PL  ++E F FA N
Sbjct: 1180 PPPACPNVMQPQGPLREANEGFTFAKN 1206



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>SYE_SULAC (Q4J8P2) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 567

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 63  LTGSIVTGFTAPQTDGPIDPGNGMDSFIQSKLKRLMTG 176
           ++G +VT F AP  DGP+  GN   + I  +  R+  G
Sbjct: 96  VSGVLVTRF-APNPDGPLHLGNARAAIISHEYARIYNG 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,723,462
Number of Sequences: 219361
Number of extensions: 644809
Number of successful extensions: 1548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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