Clone Name | rbart56d11 |
---|---|
Clone Library Name | barley_pub |
>TOP2_SCHPO (P08096) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1485 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 398 LPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQS 282 +P S T S T + PP P+R RPT RA T ++ Sbjct: 1411 IPGSSSTPKASSTNAEPPEDSDSPIRKRPTRRAAATVKT 1449
>MARE2_CHICK (Q5ZKK1) Microtubule-associated protein RP/EB family member 2| Length = 338 Score = 32.3 bits (72), Expect = 0.54 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -1 Query: 432 RQSNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYT 295 RQ D P P P +++ NL P + TAG A +PA PG T Sbjct: 173 RQGQDALPPPDPGEQIFNL-PKKSHHANSPTAGAAKSSPASKPGST 217
>MARE2_MOUSE (Q8R001) Microtubule-associated protein RP/EB family member 2| (APC-binding protein EB2) (End-binding protein 2) (EB2) Length = 326 Score = 32.3 bits (72), Expect = 0.54 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -1 Query: 432 RQSNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYT 295 RQ D P P P +++ NL P + TAG A +PA PG T Sbjct: 172 RQGQDAIPPPDPGEQIFNL-PKKSHHANSPTAGAAKSSPASKPGST 216
>YJ85_YEAST (P47152) Hypothetical 19.0 kDa protein in NNF1-STE24 intergenic| region Length = 169 Score = 32.0 bits (71), Expect = 0.70 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -2 Query: 377 SPQSWTTSRPPAQQVLPVRTRPTHRATLTTQSTRRAHWTRCCLTGHRHR 231 SP S TS PP + P T P + S R+ ++C LT H HR Sbjct: 59 SPTSLATSHPPLSSMSPYMTIPQQYLYI---SKIRSKLSQCALTRHHHR 104
>SPG7_DICDI (P22698) Spore germination protein 270-11| Length = 532 Score = 32.0 bits (71), Expect = 0.70 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = -1 Query: 426 SNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDSLLFD 247 S+ P+P P + + PT + +E P +TP T+ P PSS S + Sbjct: 333 SDSSSPTPTPTETPTETPT---ETPTETPTETPTETPTETPTETETPTPTPSSSSSDVDS 389 Query: 246 GPSAPL 229 G S+ + Sbjct: 390 GSSSEI 395
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 437 GPGKATMSIRHRCLPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQST 279 GP ++T+ LP E PTSP TT + + T PT AT+ T++T Sbjct: 558 GPSESTVPT----LPMEQPTSPTKATT------VTIEIPTTPTEEATIPTETT 600
>MARE2_HUMAN (Q15555) Microtubule-associated protein RP/EB family member 2| (APC-binding protein EB2) (End-binding protein 2) (EB2) Length = 327 Score = 31.6 bits (70), Expect = 0.91 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -1 Query: 432 RQSNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYT 295 RQ D P P P +++ NL P + TAG A +PA PG T Sbjct: 173 RQGQDAIPPPDPGEQIFNL-PKKSHHANSPTAGAAKSSPAAKPGST 217
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 31.6 bits (70), Expect = 0.91 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = -2 Query: 395 PTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQSTRRAHWTRCCLT 246 PT TS + TT PP T+PT ++T TT +T RA T C T Sbjct: 71 PTCKSTSTTTTTTRAPP--------TKPTCKSTSTTTTTTRAPPTTTCKT 112
>TIMD1_RAT (O54947) Hepatitis A virus cellular receptor 1 homolog precursor| (HAVcr-1) (T cell immunoglobulin and mucin domain-containing protein 1) (TIMD-1) (Kidney injury molecule 1) (KIM-1) Length = 307 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 Query: 398 LPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQST 279 +PT PT P TT+RP + + TR TH T T ST Sbjct: 131 IPTSPPTRP---TTTRPTTTRPTTISTRSTHVPTSTRVST 167
>DREB_HUMAN (Q16643) Drebrin (Developmentally-regulated brain protein)| Length = 648 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = -1 Query: 411 PSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSS-LDSLLFDGPSA 235 P P PA SPILD T + A A P + P P P S + L+F Sbjct: 368 PPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAEDLMF----- 422 Query: 234 PLIVESEDFVIS*PMKDNSAE 172 + +E V++ P++ +A+ Sbjct: 423 --MESAEQAVLAAPVEPATAD 441
>FIBH_BOMMO (P05790) Fibroin heavy chain precursor (Fib-H) (H-fibroin)| Length = 5263 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/72 (33%), Positives = 29/72 (40%) Frame = +2 Query: 206 TKSSLSTMSGADGPSNSSESSELGALIGLSV*PGVSAGFSLARPAVLVVGRSSRIGERLA 385 ++S T SGA S + S GA G V G AG+ A G S G + Sbjct: 4550 SESDFGTGSGAGAGSGAGAGSGAGAGYGAGVGAGYGAGYGAGAGAGYGAGAGSGAG---S 4606 Query: 386 TLSAGSGDGCSS 421 AGSG G S Sbjct: 4607 GAGAGSGAGAGS 4618 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/72 (31%), Positives = 28/72 (38%) Frame = +2 Query: 206 TKSSLSTMSGADGPSNSSESSELGALIGLSV*PGVSAGFSLARPAVLVVGRSSRIGERLA 385 ++S T SGA S + S GA G V G AG+ A G S + Sbjct: 4203 SESDFGTGSGAGAGSGAGAGSGAGAGYGAGVGAGYGAGYGAGAGAGYGAGAGSGAA---S 4259 Query: 386 TLSAGSGDGCSS 421 AGSG G S Sbjct: 4260 GAGAGSGAGAGS 4271 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/72 (31%), Positives = 28/72 (38%) Frame = +2 Query: 206 TKSSLSTMSGADGPSNSSESSELGALIGLSV*PGVSAGFSLARPAVLVVGRSSRIGERLA 385 ++S T SGA S + S GA G G AG+ A G S G + Sbjct: 3273 SESDFGTGSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGVGAGYGAGAGSGAG---S 3329 Query: 386 TLSAGSGDGCSS 421 AGSG G S Sbjct: 3330 GAGAGSGAGAGS 3341
>DHR11_MOUSE (Q3U0B3) Dehydrogenase/reductase SDR family member 11 precursor (EC| 1.-.-.-) Length = 260 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -2 Query: 434 PGKATMSIRH-RCLPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRAT 297 PG+A + H +CL E + S PP QV ++ RPT + T Sbjct: 214 PGEAAATYEHIKCLRPEDVAEAVIYVLSTPPHVQVGDIQMRPTEQVT 260
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = -2 Query: 395 PTESPTSPQSWTTSRPPAQQVLPV 324 PT SPT+P SWT P VLPV Sbjct: 2222 PTISPTAPTSWTLPPGPLLGVLPV 2245
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Frame = -1 Query: 411 PSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINA--------PSSLDSL 256 P P PA A +P + TS A E PA P P N+ PSSL S Sbjct: 1401 PLPSPASATATAAPAAPEDAATSAAAAPGEGPA-APSSAPPPSNSSSSSAPRRPSSLQS- 1458 Query: 255 LFDGPSAPLIVESED 211 LF P A +S D Sbjct: 1459 LFGLPEAAGARDSRD 1473
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 8/54 (14%) Frame = -1 Query: 372 PILDDLPTTSTAGLASENP--------ADTPGYTDNPINAPSSLDSLLFDGPSA 235 P+ DLP T T L E+P ++TPGY P SL S F P A Sbjct: 254 PVRPDLPET-TKSLVPEHPPSSGSHLTSETPGYATAPSAVTDSLSSPAFTFPEA 306
>ZAN_HUMAN (Q9Y493) Zonadhesin precursor| Length = 2812 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 440 IGPGKATMSIRHRCLPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQ 285 I P K T+ +PTE PT P T +P P T PT T++T+ Sbjct: 768 ISPEKLTIPTEKPTIPTEKPTIP----TEKPTISTEEP--TTPTEETTISTE 813 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = -2 Query: 440 IGPGKATMSIRHRCLPTESPTSPQSWTTSRP-----PAQQ--VLPVR-TRPTHRATLTTQ 285 I P K T+S +PTE PT P TT P ++ + P + T PT + T++T+ Sbjct: 908 ISPEKPTISTEKPTIPTEKPTIPTEETTISTEKLTIPTEKPTISPEKLTIPTEKPTISTE 967
>V33P_ADE05 (P24940) 33 kDa phosphoprotein| Length = 229 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/43 (46%), Positives = 21/43 (48%) Frame = -2 Query: 395 PTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQSTRRAH 267 P +S T TTS P A LPVR RP R T TR AH Sbjct: 68 PQKSATGSSMATTSAPQAPPALPVR-RPNRR--WDTTGTRAAH 107
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 398 LPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQST 279 LPT +P+ P S TT+ PP P T P+ T + T Sbjct: 1449 LPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPT 1488
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 29.3 bits (64), Expect = 4.5 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = -1 Query: 411 PSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDSLLFDGPSAP 232 PSP P+ + P P+ S + S +P+ +P + +PI +PS S P A Sbjct: 328 PSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPKPS---PSPVAV 384 Query: 231 LIVESEDFV 205 +V ++D + Sbjct: 385 KLVWADDAI 393
>TBX22_HUMAN (Q9Y458) T-box transcription factor TBX22 (T-box protein 22)| Length = 520 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Frame = -1 Query: 417 EHPSPLPA-DRVAN------LSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDS 259 + P LPA +R+A+ L+P++ ++P S+ G+ + + +D + AP+S + Sbjct: 383 QQPLVLPAPERLASSNSSQSLAPLMMEVPMLSSLGVTNSKSGSSEDSSDQYLQAPNSTNQ 442 Query: 258 LLF 250 +L+ Sbjct: 443 MLY 445
>ZAN_PIG (Q28983) Zonadhesin precursor| Length = 2476 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -2 Query: 431 GKATMSIRHRCLPTESPTSPQSWTTSRPPAQQVLPVRTR--PTHRATLTTQST 279 GK+T+ +PT+ T+P TT P + +P+ PT R T+ T+ T Sbjct: 439 GKSTIPTEKPMVPTKRTTTPTERTTI-PAEKPTVPIEKPMVPTERTTIPTERT 490
>RXRG_HUMAN (P48443) Retinoic acid receptor RXR-gamma (Retinoid X receptor| gamma) Length = 463 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Frame = -1 Query: 342 TAGLASENPADT-PGYTDNPINAPSSLDSL 256 +A L++ P D+ P YTD P++AP +L ++ Sbjct: 30 SAALSTGKPMDSHPSYTDTPVSAPRTLSAV 59
>PCD12_MOUSE (O55134) Protocadherin-12 precursor (Vascular cadherin-2) (Vascular| endothelial cadherin-2) (VE-cadherin-2) (VE-cad-2) Length = 1180 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -1 Query: 369 ILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDSLLFDGPSAP 232 IL L S A A NP + P P+ S L SLL G P Sbjct: 931 ILRSLVRLSVAAFAERNPVEEPAGDSPPVQQISQLLSLLHQGQFQP 976
>MYF5_XENLA (P24700) Myogenic factor 5 (Myf-5)| Length = 255 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 17 ENLPSCSSPKWLNTQNWFDHCWGLCSDLQ 103 + + CSSP+W + FD+ + CSDLQ Sbjct: 165 DGMSDCSSPQWSGRNSSFDNVY--CSDLQ 191
>DHR11_BOVIN (Q3ZBV9) Dehydrogenase/reductase SDR family member 11 precursor (EC| 1.-.-.-) Length = 255 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -2 Query: 434 PGKATMSIRH-RCLPTESPTSPQSWTTSRPPAQQVLPVRTRPTHRAT 297 P KA + H +CL E + S PP Q+ ++ RPT + T Sbjct: 209 PEKAAATYEHMKCLKPEDVAEAVIYVLSTPPHVQIGDIQMRPTEQVT 255
>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) Length = 1096 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = -1 Query: 435 TRQSNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDSL 256 T Q+ P+P PA A S T +TAG A PA P P A L Sbjct: 566 TAQAQAPAPAPAPAPAPATASASAGTTNTATTAGPAPGGPAQPP--PPQPSAADLQFSQL 623 Query: 255 LFD--GPSAP 232 L + GP+ P Sbjct: 624 LGNLLGPAGP 633
>COAT_CMVSI (Q00467) Coat protein (Capsid protein) (CP)| Length = 220 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = -3 Query: 415 ASVTAAC---RQSRQPLPN--PGRPPDHQHSRSCQ 326 A +TA C R+ R+P P+ P R P HQH R Q Sbjct: 169 APLTATCALDREVRRPCPSAYPERQPHHQHCRGHQ 203
>LCMT2_ASPFU (Q4WVD1) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)| Length = 1047 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = -1 Query: 432 RQSNDEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPI 283 R + E PS LPA+ A+ + DD L +EN +P P+ Sbjct: 819 RSISAELPSKLPANLAADFPGLKDDFKLPQALSLVTENAHSSPLRISGPV 868
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = -1 Query: 411 PSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDS 259 P+P P+ LSP PT S + +P TP T +P PS S Sbjct: 79 PTPTPSP---TLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPS 126 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/51 (35%), Positives = 22/51 (43%) Frame = -1 Query: 411 PSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDS 259 P+P PA LSP PT S + P+ TP T +P PS S Sbjct: 71 PTPTPA-----LSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPS 116
>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A (Transcription| termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) Length = 1850 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/70 (32%), Positives = 31/70 (44%) Frame = -1 Query: 420 DEHPSPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAPSSLDSLLFDGP 241 D P+P PA + +D PT S LAS P +TPG NP + + L G Sbjct: 1280 DAAPTPPPA--------VSEDQPTPSLQLLASSKPMNTPG-AANPCSPVQLSSTHLPGGT 1330 Query: 240 SAPLIVESED 211 L +SE+ Sbjct: 1331 PKRLSGDSEE 1340
>DIG1_CAEEL (Q09165) Mesocentin precursor| Length = 13100 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -1 Query: 408 SPLPADRVANLSPILDDLPTTSTAGLASENPADTPGYTDNPINAP 274 SPLP D N IL D +G+ + NP D GY PI P Sbjct: 11200 SPLPTDASGNY--ILPD------SGVTTANPTDENGYAIYPITKP 11236
>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID| domain-containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B) Length = 2236 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -1 Query: 417 EHPSPLPADRVANLSPILDDLPTTSTAGLAS----ENPADTPGYTDNPINAPSS 268 E PS LP +LS +DDLPT + A L+S + G NP +P S Sbjct: 660 ERPSSLP-----DLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFS 708
>YCF1_PINTH (P41647) Hypothetical 205.3 kDa protein ycf1 (ORF 1756)| Length = 1756 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -2 Query: 380 TSPQSWTTSRPPAQQVLPVRTRPTHRATLTTQSTRRAHWT 261 T P W T + + P R +P HR+ QS +R W+ Sbjct: 874 TFPDKWETQGMQIKLLFPFRLKPWHRS--KPQSAKRLRWS 911 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,697,530 Number of Sequences: 219361 Number of extensions: 1270470 Number of successful extensions: 4650 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4636 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)