ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
3dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
4dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 6e-08
5gb|AY106317.1| Zea mays PCO101473 mRNA sequence 60 4e-06
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
7dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
8dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
9ref|XM_477966.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
10emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phos... 54 2e-04
11emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putati... 54 2e-04
12gb|AC118201.8| Mus musculus chromosome 7, clone RP23-339M11, com... 40 3.7
13gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, com... 40 3.7
14gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cance... 40 3.7
15gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 3.7
16emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 i... 40 3.7 
>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01,
             complete sequence
          Length = 135184

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                               
Query: 231   ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgaggatgt 280
             |||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 80231 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatgt 80280



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                          
Query: 212    cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgc 271
              |||| |||||||| ||||||||||| ||||||||||||| |||||| ||||| || |  |
Sbjct: 104198 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 104257

                       
Query: 272    cgaggatgt 280
              |||||||||
Sbjct: 104258 cgaggatgt 104266
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                 
Query: 231     ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgaggatgt 280
               |||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 5547022 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatgt 5547071



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                           
Query: 212     cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgc 271
               |||| |||||||| ||||||||||| ||||||||||||| |||||| ||||| || |  |
Sbjct: 5570989 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 5571048

                        
Query: 272     cgaggatgt 280
               |||||||||
Sbjct: 5571049 cgaggatgt 5571057
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>dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full
           insert sequence
          Length = 1076

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 231 ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgaggatgt 280
           |||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct: 892 ggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatgt 843
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>dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full
           insert sequence
          Length = 1131

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 212 cctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgc 271
           |||| |||||||| ||||||||||| ||||||||||||| |||||| ||||| || |  |
Sbjct: 885 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 826

                    
Query: 272 cgaggatgt 280
           |||||||||
Sbjct: 825 cgaggatgt 817
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>gb|AY106317.1| Zea mays PCO101473 mRNA sequence
          Length = 827

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 231 ggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgaggatgt 280
           |||||| ||||||||||||| ||| || ||||| ||||||||||||||||
Sbjct: 524 ggggtcaggcagcttgaaggtgcgcgcgccctccggcgcgccgaggatgt 475
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 207      ggcggcctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
                |||| |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 16055858 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 16055802
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>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F09
          Length = 166568

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 207   ggcggcctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
             |||| |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 26191 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 26135
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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0040K22
          Length = 155832

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 207    ggcggcctaaccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
              |||| |||| |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 137260 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 137204
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>ref|XM_477966.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 217 ccgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctc 263
           |||||||| ||||||||||| ||||||||||||| ||| || |||||
Sbjct: 407 ccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctc 361
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>emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phosphatase
          Length = 2748

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 218  cgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgagga 277
            ||||||| ||||||||||| ||| |  |||||| ||| || ||||| |||||||||||||
Sbjct: 2612 cgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgccgagga 2553

               
Query: 278  tgt 280
            |||
Sbjct: 2552 tgt 2550
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>emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putative acid phosphatase (bci-3
            gene)
          Length = 1152

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 218  cgatgtaatacatggggtcgggcagcttgaaggggcgggcaccctctggcgcgccgagga 277
            ||||||| ||||||||||| ||| |  |||||| ||| || ||||| |||||||||||||
Sbjct: 1016 cgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgccgagga 957

               
Query: 278  tgt 280
            |||
Sbjct: 956  tgt 954
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>gb|AC118201.8| Mus musculus chromosome 7, clone RP23-339M11, complete sequence
          Length = 194241

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     caagctctcaacaatggaaa 100
              ||||||||||||||||||||
Sbjct: 189390 caagctctcaacaatggaaa 189371
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>gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, complete sequence
          Length = 175873

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    caagctctcaacaatggaaa 100
             ||||||||||||||||||||
Sbjct: 27587 caagctctcaacaatggaaa 27568
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>gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 174576

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    agctctcaacaatggaaatg 102
             ||||||||||||||||||||
Sbjct: 45528 agctctcaacaatggaaatg 45547
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 235     tcgggcagcttgaaggggcgggcaccct 262
               |||||||||||||||| |||||| ||||
Sbjct: 1551158 tcgggcagcttgaaggcgcgggcgccct 1551185
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>emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 in linkage group 20,
            complete sequence
          Length = 84525

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   attaagcagcatgcaacatc 43
            ||||||||||||||||||||
Sbjct: 6109 attaagcagcatgcaacatc 6090


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,126,535
Number of Sequences: 3902068
Number of extensions: 2126535
Number of successful extensions: 35489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35431
Number of HSP's gapped (non-prelim): 58
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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