ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 454 e-124
2gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, com... 103 4e-19
3ref|XM_468463.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
5dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
7dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3... 54 3e-04
8dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds 54 3e-04
9gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Canc... 44 0.33
10gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 1.3
11gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
12emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA 42 1.3
13emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA 42 1.3
14emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA 42 1.3
15emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA 42 1.3
16emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA 42 1.3
17emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA 42 1.3
18emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA 42 1.3
19emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA 42 1.3
20emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA 42 1.3
21emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA 42 1.3
22emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA 42 1.3
23emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA 42 1.3
24emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA 42 1.3
25emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA 42 1.3
26emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA 42 1.3
27emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA 42 1.3
28emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA 42 1.3
29emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 i... 42 1.3
30gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, comple... 42 1.3
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
32emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 42 1.3
33gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.3
34emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in... 42 1.3
35ref|XM_476112.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
36ref|NM_053924.1| Rattus norvegicus ATP-binding cassette, sub-fam... 40 5.2
37gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
38gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Can... 40 5.2
39gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosom... 40 5.2
40gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 40 5.2
41gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome ... 40 5.2
42gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosom... 40 5.2
43emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complet... 40 5.2
44emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in... 40 5.2
45gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 40 5.2
46emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 i... 40 5.2
47gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, r... 40 5.2
48gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Canc... 40 5.2
49gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 5.2
50dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
52emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, ... 40 5.2
53dbj|AK110599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
54dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
55dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
56dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
57emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 5.2
58dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
59gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55... 40 5.2
60gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 40 5.2
61emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on ch... 40 5.2
62gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.2
63emb|BX005187.9| Mouse DNA sequence from clone RP23-187O10 on chr... 40 5.2
64gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, ... 40 5.2
65gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, compl... 40 5.2
66gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosom... 40 5.2
67dbj|AB020209.1| Rattus norvegicus mRNA for multidrug resistance ... 40 5.2
68dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for ... 40 5.2 
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
          Length = 1285

 Score =  454 bits (229), Expect = e-124
 Identities = 246/249 (98%), Gaps = 2/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 23   aattcgatcgtcgtcccttctt-aataataatttacatacatatgcacgctggattaaat 81
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1285 aattcgatcgtcgtcccttctttaataataatttacatacatatgcacgctggattaaat 1226

                                                                        
Query: 82   ggcgtgcgtggtactggtacaatgcaaaaggtagggaaagtagtacagcaggtactatac 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ggcgtgcgtggtactggtacaatgcaaaaggtagggaaagtagtacagcaggtactatac 1166

                                                                        
Query: 142  tgactgaaactcgcagacttgaacaggcgacgctgccggcaggcacacacaccgaggaga 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 tgactgaaactcgcagacttgaacaggcgacgctgccggcaggcacacacaccgaggaga 1106

                                                                        
Query: 202  gacggcagatttgagaactattacagcgtgcgcggccgagacacgattcacg-tacgcgc 260
            ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1105 gacggcagatttgagaactattacagcgtgcgcggccgagacacgatccacgttacgcgc 1046

                     
Query: 261  gcaccagca 269
            |||||||||
Sbjct: 1045 gcaccagca 1037



 Score =  208 bits (105), Expect = 1e-50
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                        
Query: 287  atgatcggtcgacgatgaacagcgataagattccatccatggccgcccagactgattggt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 atgatcggtcgacgatgaacagcgataagattccatccatggccgcccagactgattggt 960

                                                         
Query: 347  ccactagccgcggctcttgaaggggatcgccctgatcaccaccac 391
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  ccactagccgcggctcttgaaggggatcgccctgatcaccaccac 915
to top
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds
          Length = 1248

 Score =  103 bits (52), Expect = 4e-19
 Identities = 96/109 (88%), Gaps = 5/109 (4%)
 Strand = Plus / Minus

                                                                        
Query: 287  atgatcggtcgacgatgaacagcgataagattcca----tccatggccgcccagactgat 342
            ||||||| |||||||||||||||||||||||||||    ||||||| || | ||||||||
Sbjct: 1007 atgatcgatcgacgatgaacagcgataagattccacccgtccatggtcggc-agactgat 949

                                                             
Query: 343  tggtccactagccgcggctcttgaaggggatcgccctgatcaccaccac 391
            |||   ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 948  tggctgactagtcgcggctcttgaaggggatggccctgatcaccaccac 900



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   aattaattcgatcgtcgtcccttcttaat-aataatttacatacatatgcacgctggatt 77
            |||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||   ||
Sbjct: 1248 aattaactcgatcgacgttccttcttaattaataatttacatacatatgcacgctccgtt 1189

                        
Query: 78   aaatggcgtgcg 89
            |||| |||||||
Sbjct: 1188 aaatcgcgtgcg 1177



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 170  gacgctgccggcaggcacacacaccgaggagag 202
            ||||||| |||||||||||||||||||||||||
Sbjct: 1111 gacgctgtcggcaggcacacacaccgaggagag 1079



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  aactcgcagacttgaacagg 168
            ||||||||||||||||||||
Sbjct: 1142 aactcgcagacttgaacagg 1123
to top
>ref|XM_468463.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1319

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 357  cggctcttgaaggggatcgccctgatcaccaccac 391
            ||||||||||||||||| || ||||||||||||||
Sbjct: 1012 cggctcttgaaggggattgctctgatcaccaccac 978
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 357      cggctcttgaaggggatcgccctgatcaccaccac 391
                ||||||||||||||||| || ||||||||||||||
Sbjct: 35369407 cggctcttgaaggggattgctctgatcaccaccac 35369373



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 359      gctcttgaaggggatcgccctgat 382
                ||||||||| ||||||||||||||
Sbjct: 27065642 gctcttgaatgggatcgccctgat 27065619
to top
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1136_C04
          Length = 103194

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 357   cggctcttgaaggggatcgccctgatcaccaccac 391
             ||||||||||||||||| || ||||||||||||||
Sbjct: 29955 cggctcttgaaggggattgctctgatcaccaccac 29921
to top
>dbj|AK102174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086K14, full
            insert sequence
          Length = 1318

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 357  cggctcttgaaggggatcgccctgatcaccaccac 391
            ||||||||||||||||| || ||||||||||||||
Sbjct: 1011 cggctcttgaaggggattgctctgatcaccaccac 977
to top
>dbj|AB029325.1| Oryza sativa gene for water channel protein RWC3, promoter region and
            complete cds
          Length = 5325

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 357  cggctcttgaaggggatcgccctgatcaccaccac 391
            ||||||||||||||||| || ||||||||||||||
Sbjct: 4910 cggctcttgaaggggattgctctgatcaccaccac 4876
to top
>dbj|AB016623.1| Oryza sativa gene for RWC-3, complete cds
          Length = 1403

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 357 cggctcttgaaggggatcgccctgatcaccaccac 391
           ||||||||||||||||| || ||||||||||||||
Sbjct: 989 cggctcttgaaggggattgctctgatcaccaccac 955
to top
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 174309

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 44    taataataatttacatacatat 65
             ||||||||||||||||||||||
Sbjct: 29491 taataataatttacatacatat 29512
to top
>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 49    ataatttacatacatatgcac 69
             |||||||||||||||||||||
Sbjct: 95031 ataatttacatacatatgcac 95011
to top
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05,
             complete sequence
          Length = 119573

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 44    taataataatttacatacatatgca 68
             ||||||||| |||||||||||||||
Sbjct: 27479 taataataacttacatacatatgca 27503
to top
>emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA
          Length = 970

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 30  gggaaagtagtacagcaggta 10
to top
>emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA
          Length = 965

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 56  gggaaagtagtacagcaggta 36
to top
>emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 62  gggaaagtagtacagcaggta 42
to top
>emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 63  gggaaagtagtacagcaggta 43
to top
>emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 63  gggaaagtagtacagcaggta 43
to top
>emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 50  gggaaagtagtacagcaggta 30
to top
>emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 62  gggaaagtagtacagcaggta 42
to top
>emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA
          Length = 935

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 30  gggaaagtagtacagcaggta 10
to top
>emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA
          Length = 960

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 55  gggaaagtagtacagcaggta 35
to top
>emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 55  gggaaagtagtacagcaggta 35
to top
>emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 64  gggaaagtagtacagcaggta 44
to top
>emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA
          Length = 975

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 gggaaagtagtacagcaggta 135
           |||||||||||||||||||||
Sbjct: 68  gggaaagtagtacagcaggta 48
to top
>emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 in linkage group 10,
             complete sequence
          Length = 167226

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    taataataatttacatacata 64
             |||||||||||||||||||||
Sbjct: 60087 taataataatttacatacata 60107
to top
>gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, complete sequence
          Length = 125133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ataatttacatacatatgcac 69
             |||||||||||||||||||||
Sbjct: 18615 ataatttacatacatatgcac 18635
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 44       taataataatttacatacatatgca 68
                ||||||||| |||||||||||||||
Sbjct: 15861488 taataataacttacatacatatgca 15861464



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 353     gccgcggctcttgaagggga 372
               ||||||||||||||||||||
Sbjct: 6211026 gccgcggctcttgaagggga 6211045
to top
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    aataataatttacatacatat 65
             |||||||||||||||||||||
Sbjct: 30255 aataataatttacatacatat 30275
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 167     ggcgacgctgccggcaggcac 187
               |||||||||||||||||||||
Sbjct: 2595820 ggcgacgctgccggcaggcac 2595840
to top
>emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in linkage group 10,
             complete sequence
          Length = 160621

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    taataataatttacatacata 64
             |||||||||||||||||||||
Sbjct: 47614 taataataatttacatacata 47634
to top
>ref|XM_476112.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 gccgcggctcttgaagggga 372
           ||||||||||||||||||||
Sbjct: 354 gccgcggctcttgaagggga 335
to top
>ref|NM_053924.1| Rattus norvegicus ATP-binding cassette, sub-family C (CFTR/MRP),
            member 5 (Abcc5), mRNA
          Length = 5744

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  atcgccctgatcaccaccac 391
            ||||||||||||||||||||
Sbjct: 3461 atcgccctgatcaccaccac 3480
to top
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
             complete sequence
          Length = 172647

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   gccgcggctcttgaagggga 372
             ||||||||||||||||||||
Sbjct: 41381 gccgcggctcttgaagggga 41400
to top
>gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216676

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   cagatttgagaactattaca 226
             ||||||||||||||||||||
Sbjct: 46344 cagatttgagaactattaca 46325
to top
>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete
             sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tgcgtggtactggtacaatg 105
             ||||||||||||||||||||
Sbjct: 64904 tgcgtggtactggtacaatg 64885
to top
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
            complete sequence
          Length = 183648

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 44   taataataatttacatacat 63
            ||||||||||||||||||||
Sbjct: 3763 taataataatttacatacat 3744
to top
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence
          Length = 233904

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     ttaataataatttacatacatatg 66
              ||||||||||| ||||||||||||
Sbjct: 205619 ttaataataatatacatacatatg 205596
to top
>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete sequence
          Length = 209835

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     tgcgtggtactggtacaatg 105
              ||||||||||||||||||||
Sbjct: 199385 tgcgtggtactggtacaatg 199366
to top
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS
          Length = 1139

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 885 gctcttgaatgggatcgccctgat 862
to top
>emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in linkage group 5,
             complete sequence
          Length = 72481

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ttcttaataataatttacat 59
             ||||||||||||||||||||
Sbjct: 25089 ttcttaataataatttacat 25108
to top
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     taataataatttacatacat 63
              ||||||||||||||||||||
Sbjct: 100924 taataataatttacatacat 100943
to top
>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3,
             complete sequence
          Length = 190220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    taataataatttacatacat 63
             ||||||||||||||||||||
Sbjct: 69241 taataataatttacatacat 69260
to top
>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone
              BACR48C05, complete sequence
          Length = 164450

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tacatacatatgcacgctgg 74
              ||||||||||||||||||||
Sbjct: 141958 tacatacatatgcacgctgg 141939
to top
>gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 184696

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cagatttgagaactattaca 226
             ||||||||||||||||||||
Sbjct: 18168 cagatttgagaactattaca 18187
to top
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    ttaataataatttacatacatatg 66
             ||||||||||| ||||||||||||
Sbjct: 83579 ttaataataatatacatacatatg 83602
to top
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 359   gctcttgaaggggatcgccctgat 382
             ||||||||| ||||||||||||||
Sbjct: 37291 gctcttgaatgggatcgccctgat 37268
to top
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0461B08
          Length = 153743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 359    gctcttgaaggggatcgccctgat 382
              ||||||||| ||||||||||||||
Sbjct: 118844 gctcttgaatgggatcgccctgat 118821
to top
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttcttaataataatttacat 59
             ||||||||||||||||||||
Sbjct: 69809 ttcttaataataatttacat 69790
to top
>dbj|AK110599.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-G03, full
           insert sequence
          Length = 853

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 gccgcggctcttgaagggga 372
           ||||||||||||||||||||
Sbjct: 97  gccgcggctcttgaagggga 116
to top
>dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F12, full
           insert sequence
          Length = 1272

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 gccgcggctcttgaagggga 372
           ||||||||||||||||||||
Sbjct: 538 gccgcggctcttgaagggga 519
to top
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full
           insert sequence
          Length = 1128

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 918 gctcttgaatgggatcgccctgat 895
to top
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full
           insert sequence
          Length = 1205

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 973 gctcttgaatgggatcgccctgat 950
to top
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    taataataatttacatacat 63
             ||||||||||||||||||||
Sbjct: 76094 taataataatttacatacat 76075
to top
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full
           insert sequence
          Length = 1136

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 918 gctcttgaatgggatcgccctgat 895
to top
>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete
              sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tacatacatatgcacgctgg 74
              ||||||||||||||||||||
Sbjct: 123669 tacatacatatgcacgctgg 123650
to top
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    taataataatttacatacat 63
             ||||||||||||||||||||
Sbjct: 23638 taataataatttacatacat 23619
to top
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
              sequence
          Length = 203615

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     tgcgtggtactggtacaatg 105
              ||||||||||||||||||||
Sbjct: 196039 tgcgtggtactggtacaatg 196058
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 162     gaacaggcgacgctgccggc 181
               ||||||||||||||||||||
Sbjct: 1380459 gaacaggcgacgctgccggc 1380478
to top
>emb|BX005187.9| Mouse DNA sequence from clone RP23-187O10 on chromosome X, complete
             sequence
          Length = 98612

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tgcgtggtactggtacaatg 105
             ||||||||||||||||||||
Sbjct: 32191 tgcgtggtactggtacaatg 32172
to top
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 913 gctcttgaatgggatcgccctgat 890
to top
>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tgcgtggtactggtacaatg 105
             ||||||||||||||||||||
Sbjct: 50679 tgcgtggtactggtacaatg 50660
to top
>gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosome 3, complete sequence
          Length = 222889

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   acaatgcaaaaggtagggaa 119
             ||||||||||||||||||||
Sbjct: 94243 acaatgcaaaaggtagggaa 94262
to top
>dbj|AB020209.1| Rattus norvegicus mRNA for multidrug resistance protein (MRP5),
            complete cds
          Length = 5744

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  atcgccctgatcaccaccac 391
            ||||||||||||||||||||
Sbjct: 3461 atcgccctgatcaccaccac 3480
to top
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel
           protein, complete cds
          Length = 1116

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 359 gctcttgaaggggatcgccctgat 382
           ||||||||| ||||||||||||||
Sbjct: 916 gctcttgaatgggatcgccctgat 893


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,986,574
Number of Sequences: 3902068
Number of extensions: 2986574
Number of successful extensions: 61250
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61060
Number of HSP's gapped (non-prelim): 188
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top