ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STO_ARATH (Q96288) Salt-tolerance protein 52 8e-07
2STH_ARATH (Q9SID1) Salt tolerance-like protein 49 8e-06
3HTXD_PSEST (O69063) Hypophosphite import ATP-binding protein htx... 31 1.8
4PYRK_THEMA (Q9X1X4) Probable dihydroorotate dehydrogenase electr... 30 4.0
5MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin... 28 8.9
6IF2_CAUCR (Q9AC25) Translation initiation factor IF-2 28 8.9

>STO_ARATH (Q96288) Salt-tolerance protein|
          Length = 248

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 42/107 (39%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
 Frame = -1

Query: 415 PQDWAVDELLQFSDY*SSDKLHKDSTLGFKELEWFTADMELFHDHAPKGGRAAMEVPEFF 236
           P  WAVD+   FSD  S+DK      LG  EL+WF +DM  F D        A EVPE  
Sbjct: 149 PLPWAVDDFFHFSDIESTDK-KGQLDLGAGELDWF-SDMGFFGDQINDKALPAAEVPELS 206

Query: 235 ASQAADDAAYY-RQSRVAATAGVRQSKKARVEIA---DDEDFFIVPD 107
            S      +Y   +S V+        KK R E     DDE+ FIVPD
Sbjct: 207 VSHLGHVHSYKPMKSNVS-------HKKPRFETRYDDDDEEHFIVPD 246



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>STH_ARATH (Q9SID1) Salt tolerance-like protein|
          Length = 238

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = -1

Query: 406 WAVDELLQFSDY*SSDKLHKDSTLGFKELEWFTADMELFHDHAPKGGRAAMEVPEFFASQ 227
           WA DE   +SD   S+K  +   LG  EL+W  A+M LF D   +      EVPE   S 
Sbjct: 143 WATDEFFSYSDLDCSNKEKEQLDLG--ELDWL-AEMGLFGDQPDQEALPVAEVPELSFSH 199

Query: 226 AADDAAYYRQSRVAATAGVRQSKKARVEIA--DDEDFFIVPD 107
            A   +Y R  +         +KK R+E    D+E+ F+VPD
Sbjct: 200 LAHAHSYNRPMKSNV-----PNKKQRLEYRYDDEEEHFLVPD 236



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>HTXD_PSEST (O69063) Hypophosphite import ATP-binding protein htxD (EC 3.6.3.-)|
          Length = 341

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 368 VQRQAAQGLDSRLQGAGVVHRRHGALPRPRAQGRQGGHGG 249
           +QRQ + G D          RRHGA+ R R   R G HGG
Sbjct: 299 LQRQTSAGAD----------RRHGAVVRDRTTHRNGPHGG 328



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>PYRK_THEMA (Q9X1X4) Probable dihydroorotate dehydrogenase electron transfer|
           subunit
          Length = 282

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
 Frame = +2

Query: 260 RPAALGRVVVEELHVGGEPLQLLEAESRV---LVQLVAGLVVRELQEL-----------V 397
           + A  G+ VV  LH  GE + L  A+++    L ++V  +V +   EL           V
Sbjct: 31  KEARPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMVVKVVGKTTHELSLKKEGDTILDV 90

Query: 398 HGPVLR-QELRRRGNLLSAGGGLG 466
            GP+    E+   GN+L  GGG+G
Sbjct: 91  VGPLGNPSEIENYGNVLLVGGGVG 114



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>MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin-associated|
           protein)
          Length = 389

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 356 AAQGLDSRLQGAGVVHRRHGALPRPRAQ----GRQGGHGG 249
           AA G+++R +     HR H   PRP AQ       GG GG
Sbjct: 32  AAAGVEARARDPPPAHRAHPRHPRPAAQPSARRMDGGSGG 71



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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 308 RRHGALPRPRAQGRQGGHGGT 246
           RRHG  P PR    QGG GG+
Sbjct: 67  RRHGEAPAPRPAPPQGGGGGS 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,134,100
Number of Sequences: 219361
Number of extensions: 785580
Number of successful extensions: 2892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2881
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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