ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56b11 |
|---|---|
| Clone Library Name | barley_pub |
>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)| (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460) Length = 4128 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = -1 Query: 148 FTYFPDFCVCTPHVKCWAACVVALNPNIKLIRCGQHTDVKDGIKLID 8 F++FP F C + C A +++L+P C GI+L++ Sbjct: 2848 FSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894
>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa) (R-PTP-kappa) Length = 1439 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +2 Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226 + H K+W +N + Q K ++HR ++AS E Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259
>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa) (R-PTP-kappa) Length = 1457 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = +2 Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226 + H K+W +N + Q K ++HR ++AS E Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258
>HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) (Homologous to| SIR2 protein 1) Length = 503 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -3 Query: 272 CHWDTSHRRREDLNMIPMYASSLSK 198 CHWD H++ +DL I + + K Sbjct: 465 CHWDIPHKKWQDLKKIDYNCTEIDK 489
>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)| (Oncogene GLI) Length = 1106 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 17/121 (14%) Frame = -3 Query: 323 IHEDQAQRLHGKIP*HLCHWDTSHRRREDLNMIPMYASSLSKIYGE-------------V 183 +H ++ +HG+ +CHW R M + + GE Sbjct: 253 VHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY 312 Query: 182 SSVDQFVTSLRFYLFPR-FLCVYSSC-KMLGSLCGRIKP*YKTYPMWATYGCK--GWNKT 15 S ++ T LR + + ++C + C K + R K +T+ Y CK G K Sbjct: 313 SRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR 372 Query: 14 Y 12 Y Sbjct: 373 Y 373
>HUL5_YEAST (P53119) Probable ubiquitin-protein ligase HUL5 (EC 6.3.2.-)| Length = 910 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = -3 Query: 275 LCHWDTSHRRREDLNMIPMY------ASSLSKIYGEVSSVDQFVTSLRFYLFPRFLCVYS 114 L + S R+ L+++ +Y A +LS + + +VD+F+ SL YL YS Sbjct: 104 LSSYPNSLGNRQLLSLLKLYQDDALVAETLSDLNMDCPTVDEFLDSLSVYLCRASFLSYS 163 Query: 113 SCKMLGSL 90 S L + Sbjct: 164 SASKLADV 171
>TAH18_YEAST (Q12181) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 623 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/55 (27%), Positives = 22/55 (40%) Frame = +2 Query: 80 CDHTSCPTFYMRSTHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSESYSDLH 244 CD S P S KIW +V ++ GQ ++ R T + DL+ Sbjct: 325 CDFMSIPR---TSFFLKIWTFATDVTKMERGQEQLNDQREKLRQFATDQDMQDLY 376
>PURA_BRUSU (P65879) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -3 Query: 83 RIKP*YKTYPMWA--TYGCKGWN 21 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUME (P65878) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -3 Query: 83 RIKP*YKTYPMWA--TYGCKGWN 21 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUAB (P0C115) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -3 Query: 83 RIKP*YKTYPMWA--TYGCKGWN 21 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>PURA_BRUA2 (Q2YQI5) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 429 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -3 Query: 83 RIKP*YKTYPMWA--TYGCKGWN 21 R+KP Y+T P W+ T G + WN Sbjct: 365 RVKPIYETLPGWSETTAGARSWN 387
>KRE6_CANAL (P87023) Beta-glucan synthesis-associated protein KRE6| Length = 740 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +2 Query: 20 YSILYIRMLPTSDKFYIRV*CDHTSCPTFYMRSTHTKIWEIGKNVNSLQTGQRK 181 + I Y+R+ D+ I V CD T PT+ H ++E N+ S + G K Sbjct: 681 FRIDYVRVYQPPDQ--INVGCDPTDFPTYDYIQQHLNLYE-NANITSFEDGGYK 731
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 6 QSISFIPSFTSVCCPHRISFILGFNAT 86 Q + F P + +C P S ++G NAT Sbjct: 648 QPLEFAPHVSPICLPETDSLLIGMNAT 674
>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation| protein 2C (EC 1.14.11.-) (Jumonji domain-containing protein 1C) Length = 2350 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 320 HEDQAQRLHGKIP*HLCHWDTSH 252 H+ +++ L GKIP HL H SH Sbjct: 963 HQPESESLVGKIPDHLPHQSASH 985
>NOL6_MOUSE (Q8R5K4) Nucleolar protein 6 (Nucleolar RNA-associated protein)| (Nrap) Length = 1141 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 136 PDFCVCTPHVKCWAACVVALNPNIKLIR--CGQHTDVKDGIKLI 11 PD+ TPH W VAL ++ L+ G +KDG+ L+ Sbjct: 283 PDYEPPTPHYNTWILQDVALETHMHLLASVLGSAQGLKDGVALL 326
>GLI1_CHICK (P55878) Zinc finger protein GLI1 (GLI) (Fragment)| Length = 556 Score = 27.3 bits (59), Expect = 9.4 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 17/121 (14%) Frame = -3 Query: 323 IHEDQAQRLHGKIP*HLCHWDTSHRRREDLNMIPMYASSLSKIYGE-------------V 183 +H + +HG+ +CHW R + M + + GE Sbjct: 265 VHHINNEHIHGEKKEFVCHWAACSREQRPFKAQYMLVVHMRRHTGEKPHKCTFEGCNKAY 324 Query: 182 SSVDQFVTSLRFYLFPR-FLCVYSSC-KMLGSLCGRIKP*YKTYPMWATYGCK--GWNKT 15 S ++ T LR + + ++C + C K + R K +T+ Y CK G K Sbjct: 325 SRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYICKIPGCTKR 384 Query: 14 Y 12 Y Sbjct: 385 Y 385 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,185,491 Number of Sequences: 219361 Number of extensions: 1099543 Number of successful extensions: 2396 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2396 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
