ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56b06 |
|---|---|
| Clone Library Name | barley_pub |
>FSHR_CHICK (P79763) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 693 Score = 32.3 bits (72), Expect = 0.45 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = -1 Query: 303 HARIMNCLCRQALAPGSQVPGVFVGLRRVMFYVVDCICAVCVSCIFMNPS 154 + ++ CL P SQ +F+ + V+ +V+ CIC +C+ NP+ Sbjct: 511 YMKVSICLPMHIETPFSQAYVIFLLVLNVLAFVIICICYICIYFTVRNPN 560
>FURIN_BOVIN (Q28193) Furin precursor (EC 3.4.21.75) (Paired basic amino acid| residue-cleaving enzyme) (PACE) (Dibasic-processing enzyme) (Trans Golgi network protease furin) Length = 797 Score = 31.6 bits (70), Expect = 0.78 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +3 Query: 186 QRICSRQHKTSHDANQQRPPAPESP 260 ++ CSRQ ++S +++QQ+PP P P Sbjct: 672 EQTCSRQSQSSRESHQQQPPPPPRP 696
>EFTU_CHICK (P84172) Elongation factor Tu, mitochondrial precursor (EF-Tu)| (Fragment) Length = 352 Score = 31.2 bits (69), Expect = 1.0 Identities = 21/70 (30%), Positives = 29/70 (41%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 + H N IGH TA IT+V + R Q+ KA + RG+ N AH Sbjct: 45 RPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYEDIDKAPEERARGITINAAHVE 104 Query: 187 SAYAVDNIKH 216 + A + H Sbjct: 105 YSTARRHYAH 114
>EFTU_THEAQ (Q01698) Elongation factor Tu (EF-Tu)| Length = 405 Score = 30.8 bits (68), Expect = 1.3 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHA 183 K H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 Query: 184 HSAYAVDNIKH 216 A + H Sbjct: 69 EYETAKRHYSH 79
>EFTU1_THETH (P60338) Elongation factor Tu-A (EF-Tu-A)| Length = 405 Score = 30.8 bits (68), Expect = 1.3 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHA 183 K H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 Query: 184 HSAYAVDNIKH 216 A + H Sbjct: 69 EYETAKRHYSH 79
>EFTU1_THET8 (Q5SHN6) Elongation factor Tu-A (EF-Tu-A)| Length = 405 Score = 30.8 bits (68), Expect = 1.3 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHA 183 K H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 Query: 184 HSAYAVDNIKH 216 A + H Sbjct: 69 EYETAKRHYSH 79
>FSHR_CAIMO (Q7ZTV5) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 693 Score = 30.4 bits (67), Expect = 1.7 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -1 Query: 303 HARIMNCLCRQALAPGSQVPGVFVGLRRVMFYVVDCICAVCVSCIFMNPS 154 + ++ CL P SQ +F+ + V+ +V+ C C +C+ NP+ Sbjct: 511 YMKVSICLPMDIETPFSQAYVIFLLVLNVLAFVIICACYICIYFTVRNPN 560
>EFTU2_THET8 (P60339) Elongation factor Tu-B (EF-Tu-B)| Length = 405 Score = 30.0 bits (66), Expect = 2.3 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHA 183 K H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 9 KPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHV 68 Query: 184 HSAYAVDNIKH 216 A + H Sbjct: 69 EYETAKRHYSH 79
>FSHR_BOVIN (P35376) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +2 Query: 50 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 193 I +TR RSLP Y ++ ++ + TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIRSLPSYGLENLKKLRAKSTYRLKKLPSLEKFVTLVEASLTYPSH 274
>FSHR_SHEEP (P35379) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +2 Query: 50 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 193 I +TR RSLP Y ++ ++ + TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIRSLPSYGLENLKKLRAKSTYHLKKLPSLEKFVTLVEASLTYPSH 274
>FSHR_MACFA (P32212) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 50 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 193 I +TR SLP Y ++ ++ R TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPSLEKLVALMEASLTYPSH 274
>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog| Length = 1278 Score = 29.3 bits (64), Expect = 3.8 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +3 Query: 99 LGKNTTGTHTWESLALQNKRGS*KYSSRTQRICS---RQHKTSHDANQQRPPAPESPALK 269 L + + + +WE + + S K RT+ +C +HK ++ +R + E+P Sbjct: 311 LSRKRSSSDSWELSGSKQNKFSDK---RTEELCGLRPEKHKRTYHTKSKRVLSREAPRHI 367 Query: 270 PADKDSS*YERACAVDGCWIELL 338 P+++ Y+ C D W L Sbjct: 368 PSERKV--YQTHCTEDSWWCSAL 388
>EFTU_PROWI (Q9TJQ8) Elongation factor Tu (EF-Tu)| Length = 409 Score = 28.9 bits (63), Expect = 5.0 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = +1 Query: 4 RKKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAH 180 +K H N IGH TA IT A G+ ++ A K RG+ NTAH Sbjct: 9 KKPHVNIGTIGHVDHGKTTLTAAITMALAARGGGKGKKYAEIDSAPEEKARGITINTAH 67
>EFTU_THICU (P42481) Elongation factor Tu (EF-Tu)| Length = 396 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/70 (31%), Positives = 28/70 (40%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA IT V +++ G + A K RG+ NTAH Sbjct: 10 KPHVNVGTIGHVDHGKTTLTAAITTVLSSKFGGEAKAYDQIDAAPEEKARGITINTAHVE 69 Query: 187 SAYAVDNIKH 216 A + H Sbjct: 70 YETANRHYAH 79
>EFTU_CYAPA (P17245) Elongation factor Tu (EF-Tu)| Length = 409 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/58 (32%), Positives = 25/58 (43%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAH 180 K H N IGH TA IT ++ G+ ++ A K RG+ NTAH Sbjct: 10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDEIDAAPEEKARGITINTAH 67
>EFTU2_XANCP (Q8PC51) Elongation factor Tu-B (EF-Tu-B)| Length = 396 Score = 28.5 bits (62), Expect = 6.6 Identities = 20/70 (28%), Positives = 27/70 (38%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA +T++ G + A K RG+ +TAH Sbjct: 10 KLHVNVGTIGHVDHGKTTLTAALTKIGAERFGGEFKAYDAIDAAPEEKARGITISTAHVE 69 Query: 187 SAYAVDNIKH 216 AV + H Sbjct: 70 YESAVRHYAH 79
>EFTU1_XANCP (Q8PC59) Elongation factor Tu-A (EF-Tu-A)| Length = 396 Score = 28.5 bits (62), Expect = 6.6 Identities = 20/70 (28%), Positives = 27/70 (38%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA +T++ G + A K RG+ +TAH Sbjct: 10 KLHVNVGTIGHVDHGKTTLTAALTKIGAERFGGEFKAYDAIDAAPEEKARGITISTAHVE 69 Query: 187 SAYAVDNIKH 216 AV + H Sbjct: 70 YESAVRHYAH 79
>CYB_LEITA (P14548) Cytochrome b| Length = 371 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = -1 Query: 234 VGLRRVMFYVVDCICAVCVSCIFMNPSCFVRPGFPMYVYLLYSSLVFCI--GYLGNERCL 61 VG F + IC VC++ +F SCF+ + ++L L F I ++ L Sbjct: 32 VGFSLGFFICMQIICGVCLAWLFF--SCFICTNWYFVLFLWDFDLGFVIRSTHICFTSLL 89 Query: 60 VFCMYMFVSNKCSVGMFLSD 1 F +Y+ + KC V + L D Sbjct: 90 FFLLYVHIF-KCIVLIILFD 108
>EFTU_CLOAB (Q97EH5) Elongation factor Tu (EF-Tu)| Length = 397 Score = 28.5 bits (62), Expect = 6.6 Identities = 22/67 (32%), Positives = 26/67 (38%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA IT + E + KA K RG+ NTAH Sbjct: 10 KPHVNIGTIGHVDHGKTTLTAAITTILAKEGKAKAFNYEEIDKAPEEKERGITINTAHVE 69 Query: 187 SAYAVDN 207 Y +N Sbjct: 70 --YETEN 74
>FSHR_HUMAN (P23945) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 50 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 193 I +TR SLP Y ++ ++ R TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSH 274
>YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 intergenic| region Length = 131 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 128 CMCTCCILP*FSALDTWVMNAV*FSVCT 45 C C CC L S + TW N+V +V T Sbjct: 58 CCCCCCCLCRDSCVSTWTKNSVANAVAT 85
>VGLB_EHV1 (P18050) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 28.1 bits (61), Expect = 8.6 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Frame = +1 Query: 166 KNTAHAHSAYAVDNIKHHTTQTNKDPRHLRARR*SLPTK------TVHDTSVLVRWM 318 K + + Y DNI HH ++D L R SL + T +DT+ V WM Sbjct: 228 KGKCSSKAEYLRDNIMHHAYHDDEDEVELDLCRPSLQLRGARAWQTTNDTTSYVGWM 284
>EFTU_PSEAE (P09591) Elongation factor Tu (EF-Tu)| Length = 397 Score = 28.1 bits (61), Expect = 8.6 Identities = 21/70 (30%), Positives = 28/70 (40%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA +T+V + G + A K RG+ NT+H Sbjct: 10 KPHVNVGTIGHVDHGKTTLTAALTKVCSDTWGGSARAFDQIDNAPEEKARGITINTSHVE 69 Query: 187 SAYAVDNIKH 216 AV + H Sbjct: 70 YDSAVRHYAH 79
>FSHR_CAVPO (Q8R428) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 50 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 193 I +TR SLP + ++ ++ R TY K P L K ++ LT+ +H Sbjct: 225 ISRTRINSLPSHGLENLKKLRARSTYNLKKLPSLEKFAALVEASLTYPSH 274
>EFTU_SPIAU (P42478) Elongation factor Tu (EF-Tu) (Fragment)| Length = 375 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +1 Query: 7 KKHANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAH 186 K H N IGH TA +T ++ G++ A K RG+ NT H Sbjct: 10 KPHINVGAIGHVDHGKTTLTAALTMYGAKKHGGKVMNYDDIDNAPEEKERGITINTRHVE 69 Query: 187 SAYAVDNIKH 216 A + H Sbjct: 70 YESAARHYAH 79
>IPYR_NEUCR (Q6MVH7) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate| phospho-hydrolase) (PPase) Length = 290 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 204 QHKTSHDANQQRPPAPESPALKPADKDSS 290 QH +S A Q PP P + L PA DSS Sbjct: 250 QHSSSRVAPDQLPPLPPNENLPPAPIDSS 278
>FURIN_RAT (P23377) Furin precursor (EC 3.4.21.75) (Paired basic amino acid| residue cleaving enzyme) (PACE) (Dibasic-processing enzyme) (Prohormone convertase 3) Length = 793 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 186 QRICSRQHKTSHDANQQRPPAPESPALKP 272 ++ CSRQ ++S ++ Q+PP PAL+P Sbjct: 672 EQTCSRQSQSSRESRPQQPP----PALRP 696 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,840,896 Number of Sequences: 219361 Number of extensions: 1315287 Number of successful extensions: 4027 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3918 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4027 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
