ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56b04 |
|---|---|
| Clone Library Name | barley_pub |
>EXPL1_ARATH (Q9LZT4) Expansin-like 1 precursor (AtEXPL1) (At-EXPL1)| (Ath-ExpBeta-2.1) Length = 265 Score = 103 bits (257), Expect = 3e-22 Identities = 44/69 (63%), Positives = 51/69 (73%) Frame = -3 Query: 529 HGPAWSTRQAPAGPLQFRVVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEG 350 HG W T + P G +QFR VVTGGYDGK +W+ + VLP W AG++YD GVQITDIAQEG Sbjct: 197 HGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWS-QSVLPSNWEAGKIYDAGVQITDIAQEG 255 Query: 349 CFPCDTHEW 323 C PCD H W Sbjct: 256 CDPCDAHIW 264
>EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXPL2)| (Ath-ExpBeta-2.2) Length = 265 Score = 100 bits (250), Expect = 2e-21 Identities = 46/69 (66%), Positives = 49/69 (71%) Frame = -3 Query: 529 HGPAWSTRQAPAGPLQFRVVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEG 350 HG W T + P G LQFR VVT GYDGK VW+ R VLP W AG+ YD GVQITDIAQEG Sbjct: 197 HGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQR-VLPANWEAGKSYDAGVQITDIAQEG 255 Query: 349 CFPCDTHEW 323 C PCD H W Sbjct: 256 CDPCDDHIW 264
>EXPL3_ARATH (Q9LZT5) Expansin-like 3 precursor (AtEXPL3) (At-EXPL3)| (Ath-ExpBeta-2.3) Length = 263 Score = 92.0 bits (227), Expect = 9e-19 Identities = 42/69 (60%), Positives = 48/69 (69%) Frame = -3 Query: 529 HGPAWSTRQAPAGPLQFRVVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEG 350 HG W+T + P G LQF+ VTGGYDGK VW+ R VLP W +G +YD GVQITDIAQEG Sbjct: 196 HGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKR-VLPANWNSGRIYDAGVQITDIAQEG 254 Query: 349 CFPCDTHEW 323 C C H W Sbjct: 255 CDTCG-HIW 262
>EXPR1_ARATH (O23547) Expansin-related protein 1 precursor (AtEXPR1) (At-EXPR1)| (Ath-ExpBeta-3.1) Length = 250 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/53 (28%), Positives = 23/53 (43%) Frame = -3 Query: 526 GPAWSTRQAPAGPLQFRVVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQIT 368 G + P G L R +V G W+ + + P W AG YD+ + +T Sbjct: 199 GAVHDLQNPPRGTLTLRFLVYGSAGINWIQSPNAI-PADWTAGATYDSNILLT 250
>PRTP_HHV1F (P06490) Processing and transport protein (Infected cell protein| 18.5) (ICP18.5 protein) Length = 780 Score = 30.4 bits (67), Expect = 3.2 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Frame = +3 Query: 249 PEAASSSAPCWRSFVCLLSPICFHLHSWVSHGKQPSCAISVIWTPVS*T-SPARHRRGST 425 PE + S PC +CF ++ I+ W VS T SP+R R G T Sbjct: 187 PELSDPSHPC---------AVCFEELCVTAN---QGATIAAAWRTVSVTTSPSRRRCGWT 234 Query: 426 SRSAHTHLPSYPPVTTTLNCSGPAGACRVLHAGPCS 533 S +LP L+ + AGA RV GPC+ Sbjct: 235 PTSVRRYLPH----AAGLSDADRAGALRV---GPCA 263
>Y1966_DEIRA (Q9RT03) UPF0124 protein DR1966| Length = 253 Score = 30.0 bits (66), Expect = 4.2 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 269 GSMLAIVCLFTIPDLLSPPLVGV--AREAALLRDIGDLDPRVVDLA---GAPPSRQHLAV 433 G +LAI P LL+ P GV A A +G + R V+ GA P R H AV Sbjct: 96 GVLLAIGTADCYPLLLADPEAGVIGAAHAGWKGTVGRIGQRTVEQMVNLGARPERIHAAV 155 Query: 434 GP 439 GP Sbjct: 156 GP 157
>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) Length = 801 Score = 29.6 bits (65), Expect = 5.5 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = -3 Query: 451 GKWVWADREVLPRRWRAGEVYDTGV 377 GK+ WAD V RW++G++ +GV Sbjct: 146 GKYTWADGNVYIGRWKSGKMNGSGV 170
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 29.6 bits (65), Expect = 5.5 Identities = 30/119 (25%), Positives = 46/119 (38%) Frame = +3 Query: 174 SPPLSGVVLCCDPSCVRA*PGQNEEPEAASSSAPCWRSFVCLLSPICFHLHSWVSHGKQP 353 SP SG C PSC + Q+ A +S+PC ++ C+ P+C V +P Sbjct: 65 SPCQSGCTSSCTPSCCQ----QSSCQPACCTSSPCQQA-CCV--PVCCKPVCCVPVCCKP 117 Query: 354 SCAISVIWTPVS*TSPARHRRGSTSRSAHTHLPSYPPVTTTLNCSGPAGACRVLHAGPC 530 C + PV S + S+ S P T +C P+ + +L C Sbjct: 118 VCCKPICCVPVC----------SGASSSCCQQSSRQPACCTTSCCRPSSSVSLLCRPVC 166
>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1798 Score = 29.6 bits (65), Expect = 5.5 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 411 RRGSTSRSAHTHLPSYPPVTTTLNCSGPAGACR 509 +R S S S+HT S PP+T CSG A R Sbjct: 906 KRLSVSESSHTESDSSPPMTVRRRCSGLLDAPR 938
>GBRE_HUMAN (P78334) Gamma-aminobutyric-acid receptor epsilon subunit precursor| (GABA(A) receptor) Length = 506 Score = 28.9 bits (63), Expect = 9.3 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = -1 Query: 303 IVNKQTIANMEPKKMLLLAPRFGRATHARTKDRSTA---PHQTGEVISLVSHE 154 ++ QT A+ PK L PR HART+ RS A HQ V +V+ E Sbjct: 364 LIYNQTKAHASPK---LRHPRINSRAHARTRARSRACARQHQEAFVCQIVTTE 413
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2| (EC 2.7.11.1) Length = 1734 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 411 RRGSTSRSAHTHLPSYPPVTTTLNCSG 491 +R S S S+HT S PP+T CSG Sbjct: 847 KRLSVSESSHTESDSSPPMTVRHRCSG 873
>COQ6_DROME (Q9VMQ5) Putative ubiquinone biosynthesis monooxgenase COQ6 (EC| 1.14.13.-) Length = 477 Score = 28.9 bits (63), Expect = 9.3 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = +2 Query: 326 LVGVAREAALLRDIGDLDPRVVDLAGAPPSRQHLAVGPHPLAVVPAGHHHPEL 484 LVG AAL ++ D +V+ L GAP R GP+ V H+ EL Sbjct: 58 LVGTTLAAALAKNSTLADKKVLLLEGAPEFRGFNPTGPYQNRVSAINHNSIEL 110
>MKC1_CANAL (P43068) Mitogen-activated protein kinase MKC1 (EC 2.7.11.24) (MAP| kinase MKC1) Length = 501 Score = 28.9 bits (63), Expect = 9.3 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +2 Query: 263 FFGSMLAIVCLFTIPDLLSPPLVGVAREAALLRDIGDLDPRVVDLAGAPPSRQH 424 FF I CL+ + D++ P+ G E L ++ + D + +G P S QH Sbjct: 98 FFRGHKNITCLYDL-DIIPNPMTGEFNEIYLYEELMECDMHQIIRSGQPLSDQH 150
>KPRS_VIBVY (Q7MMZ1) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 305 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 394 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBVU (Q8DFF5) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 305 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 394 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBPA (Q87RN8) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 305 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 394 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193
>KPRS_VIBCH (Q9KQ22) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)| (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) Length = 314 Score = 28.9 bits (63), Expect = 9.3 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 305 PDLLSPPLVGVAREAALLRDIGDLDPRVVD 394 P ++SP L GV R A + +GD+D +VD Sbjct: 164 PVVVSPDLGGVVRARATAKALGDIDIAIVD 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,919,764 Number of Sequences: 219361 Number of extensions: 1596281 Number of successful extensions: 5347 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5092 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5339 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
