ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56b02 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 92.4 bits (228), Expect = 6e-19 Identities = 48/59 (81%), Positives = 52/59 (88%), Gaps = 1/59 (1%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 317 FPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 204 FPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 89.0 bits (219), Expect = 6e-18 Identities = 43/57 (75%), Positives = 48/57 (84%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 320 +PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 204 YPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 85.1 bits (209), Expect = 9e-17 Identities = 39/56 (69%), Positives = 45/56 (80%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 323 +PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 81.3 bits (199), Expect = 1e-15 Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 320 +PLQNV++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 79.7 bits (195), Expect = 4e-15 Identities = 41/58 (70%), Positives = 47/58 (81%), Gaps = 1/58 (1%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 320 +PLQNV++RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 205 YPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 66.6 bits (161), Expect = 3e-11 Identities = 29/39 (74%), Positives = 35/39 (89%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 374 +PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 202 YPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 58.5 bits (140), Expect = 9e-09 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 9/55 (16%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 58.5 bits (140), Expect = 9e-09 Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 9/55 (16%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 10/56 (17%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 57.8 bits (138), Expect = 2e-08 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 57.8 bits (138), Expect = 2e-08 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 57.8 bits (138), Expect = 2e-08 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 57.8 bits (138), Expect = 2e-08 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 201 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 56.2 bits (134), Expect = 5e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 56.2 bits (134), Expect = 5e-08 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 7/53 (13%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 353 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 54.7 bits (130), Expect = 1e-07 Identities = 27/39 (69%), Positives = 32/39 (82%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 374 FPLQNV VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 204 FPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/39 (66%), Positives = 33/39 (84%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 374 +PLQNV+VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 204 YPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 53.9 bits (128), Expect = 2e-07 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 8/54 (14%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 353 +PL +VY+RKVK+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 207 YPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 53.5 bits (127), Expect = 3e-07 Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 2/48 (4%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 353 +PLQ VY+RKVKI+K PK DLG+L ++HGD G K+DRPD E Sbjct: 202 YPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 52.4 bits (124), Expect = 7e-07 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 8/54 (14%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 353 +PL +V + KVK+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 204 YPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 51.2 bits (121), Expect = 1e-06 Identities = 21/30 (70%), Positives = 27/30 (90%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD 401 FPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 51.2 bits (121), Expect = 1e-06 Identities = 21/30 (70%), Positives = 27/30 (90%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD 401 FPLQN++VRKVK+LK PKFD+G LM +HG+ Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 50.4 bits (119), Expect = 2e-06 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD 401 +PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 207 YPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 50.1 bits (118), Expect = 3e-06 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Frame = -1 Query: 490 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 347 FPLQNV++RKVK+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 204 FPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 30.8 bits (68), Expect = 2.0 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Frame = +1 Query: 43 LEITTNNTVEHKVHANIKHIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSR 216 LEI + + ++HA W LV+ NLH +N ++ G K R Sbjct: 700 LEILETSKFDSRMHA-----WNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPR 754 Query: 217 NQPSKLTTKFTTPRWHIYHLLDKKQQNS 300 + KLT K TP W + L+ Q NS Sbjct: 755 CKVQKLTCKSVTPEWVLQDLIIALQGNS 782
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.9 bits (63), Expect = 7.7 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +2 Query: 344 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLADVHVLE 484 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,498,455 Number of Sequences: 219361 Number of extensions: 1091569 Number of successful extensions: 2411 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2408 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
