>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 309      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
                |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 15542350 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 15542409

                   
Query: 369      ctc 371
                |||
Sbjct: 15542410 ctc 15542412



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 309      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
                |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 15685603 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 15685544

                   
Query: 369      ctc 371
                |||
Sbjct: 15685543 ctc 15685541

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                            
Query: 309      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
                |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 15497615 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 15497674

                   
Query: 369      ctc 371
                |||
Sbjct: 15497675 ctc 15497677



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 309      ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
                |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 15638836 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 15638777

                   
Query: 369      ctc 371
                |||
Sbjct: 15638776 ctc 15638774

>emb|BX276100.4|CNS09S4X Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0076H14
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 53315

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                         
Query: 309   ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
             |||||||| ||| ||||||| ||| |||||||||| |||||||||||| | |||||||||
Sbjct: 37170 ctcctccaagtgttgcaccctgcatctccgccccaacgggatcggccgctggtagaacag 37229

                
Query: 369   ctc 371
             |||
Sbjct: 37230 ctc 37232

>dbj|AK060141.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G07, full
           insert sequence
          Length = 975

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 309 ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
           |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 774 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 715

              
Query: 369 ctc 371
           |||
Sbjct: 714 ctc 712

>emb|AL954854.3|CNS08CD8 Oryza sativa chromosome 12, . BAC OSJNBa0080D17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159718

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 309    ctcctccaggtgctgcacccggcacctccgccccagcgggatcggccggtcgtagaacag 368
              |||||||| ||| ||||||| ||| || ||||||| |||||||||||| | |||||||||
Sbjct: 140052 ctcctccaagtgttgcaccctgcatctgcgccccaacgggatcggccgctggtagaacag 140111

                 
Query: 369    ctc 371
              |||
Sbjct: 140112 ctc 140114

>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 38    acgacttggttaaatctcagtcgattaagctcaagccacacccttt 83
             ||||||||||||||||| |||||| | || || |||||||||||||
Sbjct: 70681 acgacttggttaaatcttagtcgactgagatctagccacacccttt 70726

>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 314     ccaggtgctgcacccggcacct 335
               ||||||||||||||||||||||
Sbjct: 4479810 ccaggtgctgcacccggcacct 4479831

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 385    tcggcaccgccgacgcggcgaccagc 410
              |||||||||||||||||| |||||||
Sbjct: 154152 tcggcaccgccgacgcggtgaccagc 154127

>gb|AC102907.11| Mus musculus chromosome 1, clone RP24-291E1, complete sequence
          Length = 185121

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     taagctcaagccacacccttt 83
              |||||||||||||||||||||
Sbjct: 168031 taagctcaagccacacccttt 168051

>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
             sequence
          Length = 1438950

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 378   gccatcatcggcaccgccgac 398
             |||||||||||||||||||||
Sbjct: 24537 gccatcatcggcaccgccgac 24517

>ref|XM_571279.1| Cryptococcus neoformans var. neoformans JEC21 rRNA
           modification-related protein (CNF00090) partial mRNA
          Length = 1831

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 378 gccatcatcggcaccgccgac 398
           |||||||||||||||||||||
Sbjct: 283 gccatcatcggcaccgccgac 263

>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 379    ccatcatcggcaccgccgacgcggc 403
              |||||||| ||||||||||||||||
Sbjct: 159568 ccatcatccgcaccgccgacgcggc 159592

>emb|AL359845.30| Human DNA sequence from clone RP11-41L14 on chromosome X tight junction
             protein 4 (peripheral) (TJP4) pseudogene, complete
             sequence
          Length = 122272

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   acaggtaaggggactcctcca 316
             |||||||||||||||||||||
Sbjct: 72187 acaggtaaggggactcctcca 72207

>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   agcactgccagtgccaccctc 277
             |||||||||||||||||||||
Sbjct: 81185 agcactgccagtgccaccctc 81205

>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167238

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   agcactgccagtgccaccctc 277
             |||||||||||||||||||||
Sbjct: 81179 agcactgccagtgccaccctc 81199

>gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, complete sequence
          Length = 181650

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 257    agcactgccagtgccaccctc 277
              |||||||||||||||||||||
Sbjct: 141918 agcactgccagtgccaccctc 141898

>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 40     gacttggttaaatctcagtcgattaagctcaagccacacccttt 83
              ||||||||||||||| |||| | | || || |||||||||||||
Sbjct: 197738 gacttggttaaatcttagtcaactgagatctagccacacccttt 197695

>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence
          Length = 90044

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    tcaagattgatattataaaacaac 39
             |||||||||||||| |||||||||
Sbjct: 17833 tcaagattgatattttaaaacaac 17810

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     gcaccgccgacgcggcgacc 407
               ||||||||||||||||||||
Sbjct: 1245864 gcaccgccgacgcggcgacc 1245883

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 371     ccgccttgccatcatcggca 390
               ||||||||||||||||||||
Sbjct: 1760634 ccgccttgccatcatcggca 1760615

>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 2/10
          Length = 349887

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gccatcatcggcaccgccga 397
              ||||||||||||||||||||
Sbjct: 261834 gccatcatcggcaccgccga 261815

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 388     gcaccgccgacgcggcgacc 407
               ||||||||||||||||||||
Sbjct: 2561920 gcaccgccgacgcggcgacc 2561939

>emb|AJ630362.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 236k8, gene for protein similar to
             butyrophilin subfamily 1 member A1 (BTN1A1), FK506-binding
             protein 1A pseudogene, BTNL2 gene, ATP5L pseudogene,
             DLA-DRA1 gene, RPL7A pseudogene and DLA-DRB1 gene
          Length = 135953

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   cctgatagtgaacagcttctttcc 178
             ||||||||||||||||| ||||||
Sbjct: 38074 cctgatagtgaacagctgctttcc 38097

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    gcaccgccgacgcggcgacc 407
              ||||||||||||||||||||
Sbjct: 201015 gcaccgccgacgcggcgacc 200996

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gccatcatcggcaccgccga 397
              ||||||||||||||||||||
Sbjct: 609854 gccatcatcggcaccgccga 609835

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 386     cggcaccgccgacgcggcga 405
               ||||||||||||||||||||
Sbjct: 5572177 cggcaccgccgacgcggcga 5572158

>gb|AF180120.1| Symbiodinium microadriaticum isolate zCassx-cultB internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 540

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 aagcagtcacattcacaggt 301
           ||||||||||||||||||||
Sbjct: 50  aagcagtcacattcacaggt 31

>gb|AF180119.1| Symbiodinium microadriaticum isolate zCassx-cultA internal
           transcribed spacer 1, partial sequence; 5.8S ribosomal
           RNA gene, complete sequence; and internal transcribed
           spacer 2, partial sequence
          Length = 537

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 aagcagtcacattcacaggt 301
           ||||||||||||||||||||
Sbjct: 50  aagcagtcacattcacaggt 31

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    ttgccatcatcggcaccgccgacg 399
              |||||||||||||| |||||||||
Sbjct: 911595 ttgccatcatcggctccgccgacg 911618

>emb|AJ224997.1|RNO224997 Rattus norvegicus hd gene, exon 1 and partial CDS
          Length = 2368

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 ttctttcccctttccaaccc 190
           ||||||||||||||||||||
Sbjct: 837 ttctttcccctttccaaccc 856

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 380     catcatcggcaccgccgacgcggc 403
               |||||||||||||| |||||||||
Sbjct: 2543342 catcatcggcaccgacgacgcggc 2543365

>dbj|D10552.1|HAMMTII Cricetulus griseus gene for metallothionein II, complete cds
          Length = 2183

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 321 ctgcacccggcacctccgccccag 344
           ||||||||||| ||||||||||||
Sbjct: 640 ctgcacccggcccctccgccccag 663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,647,585
Number of Sequences: 3902068
Number of extensions: 3647585
Number of successful extensions: 69676
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69042
Number of HSP's gapped (non-prelim): 634
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)