ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart56a12 |
|---|---|
| Clone Library Name | barley_pub |
>ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast precursor| (EC 4.1.2.13) (Fragment) Length = 356 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/32 (71%), Positives = 27/32 (84%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 AK+NSLAQLG Y G+GES+EAKK +F KGY Y Sbjct: 325 AKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356
>ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast precursor (EC| 4.1.2.13) (ALDP) Length = 388 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/32 (71%), Positives = 26/32 (81%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 AKANSLAQLG YT +GE+ EAK+GMF K Y Y Sbjct: 357 AKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388
>ALFC_SPIOL (P16096) Fructose-bisphosphate aldolase, chloroplast precursor (EC| 4.1.2.13) Length = 394 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/28 (78%), Positives = 24/28 (85%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQK 247 AK+NSLAQLG YTGEGES+E KK MF K Sbjct: 362 AKSNSLAQLGKYTGEGESEERKKDMFVK 389
>ALFD_PEA (Q01517) Fructose-bisphosphate aldolase 2, chloroplast (EC| 4.1.2.13) Length = 349 Score = 43.5 bits (101), Expect = 1e-04 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 AK+NSLAQLG Y G+GES+EAKK Q GY Y Sbjct: 319 AKSNSLAQLGKYIGDGESEEAKKDCCQ-GYSY 349
>ALFC_CHLRE (Q42690) Fructose-bisphosphate aldolase 1, chloroplast precursor| (EC 4.1.2.13) Length = 374 Score = 33.1 bits (74), Expect = 0.18 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = -2 Query: 327 KANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 KANS AQ G Y E EA +GM++KG Y Sbjct: 342 KANSDAQQGKYDATTEGKEAAQGMYEKGKGY 372
>RPOB_LOTJA (Q9BBS9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1070 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 102 GSAETLELPEVIFMRTN-NFCMH 37 GS ETL +P VI+ R+N N CMH Sbjct: 599 GSGETLSVPLVIYRRSNKNTCMH 621
>ALF_PLAFA (P14223) Fructose-bisphosphate aldolase (EC 4.1.2.13) (41 kDa| antigen) Length = 369 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 A+ANSLA G Y G + A +++K Y Y Sbjct: 338 AEANSLATYGKYKGGAGGENAGASLYEKKYVY 369
>ALF_PLAF7 (Q7KQL9) Fructose-bisphosphate aldolase (EC 4.1.2.13)| Length = 369 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 A+ANSLA G Y G + A +++K Y Y Sbjct: 338 AEANSLATYGKYKGGAGGENAGASLYEKKYVY 369
>ALF1_CAEEL (P54216) Fructose-bisphosphate aldolase 1 (EC 4.1.2.13) (Aldolase| CE-1) (CE1) Length = 366 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESD-EAKKGMFQKGYPY 235 A+ NSLA +G YTG+ +D A + +F + Y Sbjct: 334 AQVNSLASVGKYTGDASADAAASQSLFVANHSY 366
>ALF2_PLABA (P49577) Fructose-bisphosphate aldolase 2 (EC 4.1.2.13) (ALDO-2)| Length = 358 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDEAKKGMFQKGYPY 235 A+ANSLA G Y G A +++K Y Y Sbjct: 327 AEANSLATYGKYKGGAGGSTAGASLYEKKYVY 358
>AHR_RABIT (O02747) Aryl hydrocarbon receptor (Ah receptor) (AhR)| Length = 847 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 256 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 295
>AHR_MUSSP (Q8R4S2) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 256 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 295
>AHR_MUSSI (Q8R4S4) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 256 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 295
>AHR_MUSMM (Q8R4S5) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 883 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 252 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 291
>AHR_MUSCR (Q8R4S7) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 256 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 295
>AHR_MUSMC (Q8R4S6) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 252 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 291
>AHR_MOUSE (P30561) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 252 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 291
>AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 853 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 129 LVPRTVSCIGSAETLELPEVIFMRTNNFCMHTLRKLMMRP 10 L+P ++ A L+ P ++ +RT NF T KL P Sbjct: 256 LLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFTP 295
>ALF_CICAR (O65735) Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC| 4.1.2.13) Length = 359 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 330 AKANSLAQLGSYTGEGESDE-AKKGMFQKGYPY 235 AKANS A LG+Y G + E A + + K Y Y Sbjct: 327 AKANSEATLGTYKGNSQLGEGASESLHVKDYKY 359 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,135,598 Number of Sequences: 219361 Number of extensions: 772394 Number of successful extensions: 1443 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1442 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
