ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart56a10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 194 bits (98), Expect = 2e-46 Identities = 266/322 (82%) Strand = Plus / Plus Query: 154 ggtgaggttctggccgttgagaaacgtcccccacagcatgttgaatccctgtttgtgtat 213 ||||||||||||||| ||||| |||||| ||| || |||||| |||| |||||| Sbjct: 11683437 ggtgaggttctggccattgaggaacgtcgaccagaggtggttgaagcccttgcggtgtat 11683496 Query: 214 ggagacgggatcggtgaagacggtgtggttcctcgggtacacgtccttgagcgtggtctc 273 ||| ||||| |||| ||| |||| ||||| | | |||||| ||| ||||||| ||||| Sbjct: 11683497 ggacacggggtcggcgaacacggggtggtccatggggtacctctccctgagcgtcgtctc 11683556 Query: 274 ctcggcggtgacctcgtactcggcgtaccgaagacccatgggagccacgggctcgccgta 333 | ||| | |||||||||||| ||||||| || ||||| | | ||| ||||||||||| Sbjct: 11683557 gttggccgccacctcgtactcgacgtaccggagccccatcgccggcaccggctcgccgta 11683616 Query: 334 ggaggtccaggccggccacttcatctcgccccaagggacgatctgcagcaccgtgccgtt 393 | | |||| ||||||||||||| ||||||| |||| |||||||| ||| |||||||| Sbjct: 11683617 gtcgtaccagcacggccacttcatcccgccccacgggatgatctgcaccacggtgccgtt 11683676 Query: 394 gcgcgggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgca 453 ||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||| Sbjct: 11683677 ccgcgggaggaacaccatgttggtgagcccggccccgtgcacgcccaccatcacgtcgca 11683736 Query: 454 cgagttcaccgtctccgcgaac 475 ||||||||||||| |||||||| Sbjct: 11683737 cgagttcaccgtcgccgcgaac 11683758 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 ||||||||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct: 29369122 gggaggaacaccatgttggtgaggccggcgccatggacgcccatcatcacgtcg 29369175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||||| |||||| ||||||| || ||||| |||||| | ||||| ||||| Sbjct: 29356966 gggaggaacaccaggttggtcagccccgacccgtgcaccgccaccatcgcgtcgtacgag 29357025 Query: 458 ttcaccg 464 ||||||| Sbjct: 29357026 ttcaccg 29357032
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 194 bits (98), Expect = 2e-46 Identities = 266/322 (82%) Strand = Plus / Plus Query: 154 ggtgaggttctggccgttgagaaacgtcccccacagcatgttgaatccctgtttgtgtat 213 ||||||||||||||| ||||| |||||| ||| || |||||| |||| |||||| Sbjct: 31979 ggtgaggttctggccattgaggaacgtcgaccagaggtggttgaagcccttgcggtgtat 32038 Query: 214 ggagacgggatcggtgaagacggtgtggttcctcgggtacacgtccttgagcgtggtctc 273 ||| ||||| |||| ||| |||| ||||| | | |||||| ||| ||||||| ||||| Sbjct: 32039 ggacacggggtcggcgaacacggggtggtccatggggtacctctccctgagcgtcgtctc 32098 Query: 274 ctcggcggtgacctcgtactcggcgtaccgaagacccatgggagccacgggctcgccgta 333 | ||| | |||||||||||| ||||||| || ||||| | | ||| ||||||||||| Sbjct: 32099 gttggccgccacctcgtactcgacgtaccggagccccatcgccggcaccggctcgccgta 32158 Query: 334 ggaggtccaggccggccacttcatctcgccccaagggacgatctgcagcaccgtgccgtt 393 | | |||| ||||||||||||| ||||||| |||| |||||||| ||| |||||||| Sbjct: 32159 gtcgtaccagcacggccacttcatcccgccccacgggatgatctgcaccacggtgccgtt 32218 Query: 394 gcgcgggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgca 453 ||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||| Sbjct: 32219 ccgcgggaggaacaccatgttggtgagcccggccccgtgcacgcccaccatcacgtcgca 32278 Query: 454 cgagttcaccgtctccgcgaac 475 ||||||||||||| |||||||| Sbjct: 32279 cgagttcaccgtcgccgcgaac 32300
>emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene) Length = 1514 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttc 460 ||||||||||||||||||||||| || || || |||||||||| |||||||||||||||| Sbjct: 1178 aggaacaccatgttggtgagcccggcgccgtggacgcccaccatcacgtcgcacgagttc 1119 Query: 461 acc 463 ||| Sbjct: 1118 acc 1116
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence Length = 1525 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttc 460 ||||||||||||||||| ||||| || || || |||||||||| |||||||||||||||| Sbjct: 1282 aggaacaccatgttggtcagcccggcgccgtggacgcccaccatcacgtcgcacgagttc 1223 Query: 461 acc 463 ||| Sbjct: 1222 acc 1220
>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene) Length = 1580 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttc 460 ||||||||||||||||| ||||| || || || |||||||||| |||||||||||||||| Sbjct: 1261 aggaacaccatgttggtcagcccggcgccgtggacgcccaccatcacgtcgcacgagttc 1202 Query: 461 acc 463 ||| Sbjct: 1201 acc 1199
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||| |||||| || |||||||| ||||| |||||| ||||||||||||| Sbjct: 12055 gggaggaacacctggttggtcaggcccgcaccgtgcaccgccaccagcacgtcgcacgag 12114 Query: 458 ttcaccgtc 466 ||||||||| Sbjct: 12115 ttcaccgtc 12123 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 397 cgggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacga 456 |||||||||||| ||||||||| ||||| || ||||| |||||| |||||||||||| Sbjct: 8259 cgggaggaacacttggttggtgaggcccgcgccgtgcaccgccaccagcacgtcgcacga 8318 Query: 457 gttcaccgtc 466 |||||||||| Sbjct: 8319 gttcaccgtc 8328
>ref|XM_465334.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1240 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1181 Query: 458 ttcacc 463 |||||| Sbjct: 1180 ttcacc 1175
>ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E03.25-2 mRNA Length = 2752 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1484 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1425 Query: 458 ttcacc 463 |||||| Sbjct: 1424 ttcacc 1419
>ref|XM_465333.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1490 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1431 Query: 458 ttcacc 463 |||||| Sbjct: 1430 ttcacc 1425
>emb|AJ867404.1| Triticum aestivum partial mRNA for glycosyltransferase (a4 gene) Length = 1425 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||| ||||||||||| |||||||| || ||||||||||||| |||||| |||| Sbjct: 994 gggaggaagaccatgttggtcagccccgcgccgtgcacgcccaccatcacgtccgccgag 935 Query: 458 ttcacc 463 |||||| Sbjct: 934 ttcacc 929
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 13496551 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 13496492 Query: 458 ttcacc 463 |||||| Sbjct: 13496491 ttcacc 13496486 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 1874197 gggaggaacaccatgttggtgagcccagcaccatg 1874163 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 13222726 aggaacaccatgttagtcaagcccgcaccatgcacgccca 13222765
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 11856 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 11797 Query: 458 ttcacc 463 |||||| Sbjct: 11796 ttcacc 11791
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 82480 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 82421 Query: 458 ttcacc 463 |||||| Sbjct: 82420 ttcacc 82415
>dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123E06, full insert sequence Length = 2101 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1488 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1429 Query: 458 ttcacc 463 |||||| Sbjct: 1428 ttcacc 1423
>dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H06, full insert sequence Length = 2751 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1483 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1424 Query: 458 ttcacc 463 |||||| Sbjct: 1423 ttcacc 1418
>dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D12, full insert sequence Length = 2105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| Sbjct: 1240 gggaggaacaccatgttggtcagccctgcgccgtgcacgcccaccatcacgtccgccgag 1181 Query: 458 ttcacc 463 |||||| Sbjct: 1180 ttcacc 1175
>ref|XM_464042.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1955 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 1332 gggaggaacaccatgttggtgagcccagcaccatg 1298
>ref|XM_464043.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 1407 gggaggaacaccatgttggtgagcccagcaccatg 1373
>emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4 gene) Length = 1476 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttc 460 ||||||||||||||||||||||| || || || |||||||||| |||||| ||||||| Sbjct: 1157 aggaacaccatgttggtgagcccggcgccgtggacgcccaccatcacgtccgccgagttc 1098 Query: 461 acc 463 ||| Sbjct: 1097 acc 1095
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 13758 gggaggaacaccatgttggtgagcccagcaccatg 13724
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585B01 Length = 133231 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 110841 gggaggaacaccatgttggtgagcccagcaccatg 110807
>dbj|AK119583.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C05, full insert sequence Length = 1965 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 1407 gggaggaacaccatgttggtgagcccagcaccatg 1373
>dbj|AK065605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033I23, full insert sequence Length = 1955 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatg 432 |||||||||||||||||||||||||| |||||||| Sbjct: 1332 gggaggaacaccatgttggtgagcccagcaccatg 1298
>ref|XM_549937.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||| || |||||||| || ||||||||||||| Sbjct: 1772 gggaggaacaccatgttcgtcagccccgcgccgtgcacgcccacca 1727
>ref|XM_474788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||| |||||| ||||| || || ||||||||||||| ||||||| ||||| Sbjct: 1352 gggaggaacacgcagttggtcagcccggcgccgtgcacgcccaccatcacgtcgtacgag 1293 Query: 458 ttcacc 463 |||||| Sbjct: 1292 ttcacc 1287
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||| |||||| ||||| || || ||||||||||||| ||||||| ||||| Sbjct: 112669 gggaggaacacgcagttggtcagcccggcgccgtgcacgcccaccatcacgtcgtacgag 112728 Query: 458 ttcacc 463 |||||| Sbjct: 112729 ttcacc 112734
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||| |||||| ||||| || || ||||||||||||| ||||||| ||||| Sbjct: 6558421 gggaggaacacgcagttggtcagcccggcgccgtgcacgcccaccatcacgtcgtacgag 6558480 Query: 458 ttcacc 463 |||||| Sbjct: 6558481 ttcacc 6558486 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 tatgtgatggtaaaagggatt 110 ||||||||||||||||||||| Sbjct: 292350 tatgtgatggtaaaagggatt 292330
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||| || |||||||| || ||||||||||||| Sbjct: 1089525 gggaggaacaccatgttcgtcagccccgcgccgtgcacgcccacca 1089570 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 434 acgcccaccaacacgtcgcacgagttcaccg 464 |||||||||| |||||||||||||||||||| Sbjct: 1066015 acgcccaccagcacgtcgcacgagttcaccg 1066045
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 ||||||||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct: 80003 gggaggaacaccatgttggtgaggccggcgccatggacgcccatcatcacgtcg 80056 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||||| |||||| ||||||| || ||||| |||||| | ||||| ||||| Sbjct: 67847 gggaggaacaccaggttggtcagccccgacccgtgcaccgccaccatcgcgtcgtacgag 67906 Query: 458 ttcaccg 464 ||||||| Sbjct: 67907 ttcaccg 67913
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 ||||||||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct: 131920 gggaggaacaccatgttggtgaggccggcgccatggacgcccatcatcacgtcg 131973 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||||| |||||| ||||||| || ||||| |||||| | ||||| ||||| Sbjct: 119764 gggaggaacaccaggttggtcagccccgacccgtgcaccgccaccatcgcgtcgtacgag 119823 Query: 458 ttcaccg 464 ||||||| Sbjct: 119824 ttcaccg 119830
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||| || |||||||| || ||||||||||||| Sbjct: 127193 gggaggaacaccatgttcgtcagccccgcgccgtgcacgcccacca 127238 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 434 acgcccaccaacacgtcgcacgagttcaccg 464 |||||||||| |||||||||||||||||||| Sbjct: 103683 acgcccaccagcacgtcgcacgagttcaccg 103713
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||| || |||||||| || ||||||||||||| Sbjct: 58839 gggaggaacaccatgttcgtcagccccgcgccgtgcacgcccacca 58884 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 434 acgcccaccaacacgtcgcacgagttcaccg 464 |||||||||| |||||||||||||||||||| Sbjct: 35329 acgcccaccagcacgtcgcacgagttcaccg 35359
>dbj|AK121999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110G11, full insert sequence Length = 1768 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 ||||||||||| |||||| ||||| || || ||||||||||||| ||||||| ||||| Sbjct: 1386 gggaggaacacgcagttggtcagcccggcgccgtgcacgcccaccatcacgtcgtacgag 1327 Query: 458 ttcacc 463 |||||| Sbjct: 1326 ttcacc 1321
>dbj|AK071568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103D13, full insert sequence Length = 1696 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 ||||||||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct: 1151 gggaggaacaccatgttggtgaggccggcgccatggacgcccatcatcacgtcg 1098
>dbj|AK059411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C09, full insert sequence Length = 1619 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 ||||||||||||||||||||||| || || ||||| ||||||| || ||||||| Sbjct: 1160 gggaggaacaccatgttggtgaggccggcgccatggacgcccatcatcacgtcg 1107
>ref|XM_549936.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1812 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 434 acgcccaccaacacgtcgcacgagttcaccg 464 |||||||||| |||||||||||||||||||| Sbjct: 1475 acgcccaccagcacgtcgcacgagttcaccg 1445
>ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0051D19.6), mRNA Length = 1762 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 1437 aggaacaccatgttggtgagcccggcgccgtgcactcccacca 1395
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 44656 aggaacaccatgttggtgagcccggcgccgtgcactcccacca 44614
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagtt 459 |||||||||||||| || ||||| || || ||||||||||||| | ||||| ||||||| Sbjct: 7668061 aggaacaccatgttcgtcagcccggcgccgtgcacgcccaccaccgcgtcgaacgagtt 7668003 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 247 cgggtacacgtccttgagcgtggtctcctcggcggtgacctcgtact 293 ||||||| ||||||||||||| |||| |||||| ||||||||||| Sbjct: 7668215 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtact 7668169
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 18168472 aggaacaccatgttggtgagcccggcgccgtgcactcccacca 18168514
>dbj|AK109804.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F10, full insert sequence Length = 1831 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagtt 459 |||||||||||||| || ||||| || || ||||||||||||| | ||||| ||||||| Sbjct: 1334 aggaacaccatgttcgtcagcccggcgccgtgcacgcccaccaccgcgtcgaacgagtt 1276 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 247 cgggtacacgtccttgagcgtggtctcctcggcggtgacctcgtact 293 ||||||| ||||||||||||| |||| |||||| ||||||||||| Sbjct: 1488 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtact 1442
>dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C03, full insert sequence Length = 2019 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 1347 aggaacaccatgttggtgagcccggcgccgtgcactcccacca 1305
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccacca 443 ||||||||||||||||||||||| || || ||||| ||||||| Sbjct: 18177725 aggaacaccatgttggtgagcccggcgccgtgcactcccacca 18177767
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagtt 459 |||||||||||||| || ||||| || || ||||||||||||| | ||||| ||||||| Sbjct: 7667942 aggaacaccatgttcgtcagcccggcgccgtgcacgcccaccaccgcgtcgaacgagtt 7667884 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 247 cgggtacacgtccttgagcgtggtctcctcggcggtgacctcgtact 293 ||||||| ||||||||||||| |||| |||||| ||||||||||| Sbjct: 7668096 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtact 7668050
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagtt 459 |||||||||||||| || ||||| || || ||||||||||||| | ||||| ||||||| Sbjct: 55454 aggaacaccatgttcgtcagcccggcgccgtgcacgcccaccaccgcgtcgaacgagtt 55396 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 247 cgggtacacgtccttgagcgtggtctcctcggcggtgacctcgtact 293 ||||||| ||||||||||||| |||| |||||| ||||||||||| Sbjct: 55608 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtact 55562
>gb|AY108080.1| Zea mays PCO130385 mRNA sequence Length = 855 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtc 450 |||||||||| | |||||||||||| || || ||||||||||||| |||||| Sbjct: 263 gggaggaacagcgagttggtgagcccggcgccgtgcacgcccaccagcacgtc 211
>ref|NM_112700.2| Arabidopsis thaliana unknown protein AT3G18170 mRNA, complete cds Length = 1321 Score = 48.1 bits (24), Expect = 0.027 Identities = 60/72 (83%) Strand = Plus / Minus Query: 403 gaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttcac 462 |||||||||||| || |||||||| || || ||||| | || ||||||||| || ||||| Sbjct: 903 gaacaccatgttcgtcagccccgcgccgtgaacgccgagcatcacgtcgcaggaattcac 844 Query: 463 cgtctccgcgaa 474 ||| | |||||| Sbjct: 843 cgtttgcgcgaa 832
>ref|XM_465300.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 1534 aggaacaccatgttagtcaagcccgcaccatgcacgccca 1495
>ref|XM_506796.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0042G06.21 mRNA Length = 2041 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 1531 aggaacaccatgttagtcaagcccgcaccatgcacgccca 1492
>gb|AF525024.1| Hordeum vulgare subsp. vulgare HGA6 (HGA6) gene, complete cds Length = 2692 Score = 48.1 bits (24), Expect = 0.027 Identities = 45/52 (86%) Strand = Plus / Minus Query: 400 gaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcg 451 |||| ||| ||||||||| ||||| || || ||||||||||||| ||||||| Sbjct: 2404 gagggacatcatgttggtcagcccggcgccgtgcacgcccaccagcacgtcg 2353
>gb|BT003143.1| Arabidopsis thaliana At3g18170 mRNA, complete cds Length = 1155 Score = 48.1 bits (24), Expect = 0.027 Identities = 60/72 (83%) Strand = Plus / Minus Query: 403 gaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttcac 462 |||||||||||| || |||||||| || || ||||| | || ||||||||| || ||||| Sbjct: 852 gaacaccatgttcgtcagccccgcgccgtgaacgccgagcatcacgtcgcaggaattcac 793 Query: 463 cgtctccgcgaa 474 ||| | |||||| Sbjct: 792 cgtttgcgcgaa 781
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 92756 aggaacaccatgttagtcaagcccgcaccatgcacgccca 92795
>dbj|AP005011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0622F08 Length = 140628 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 30653 aggaacaccatgttagtcaagcccgcaccatgcacgccca 30692
>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8 Length = 76816 Score = 48.1 bits (24), Expect = 0.027 Identities = 60/72 (83%) Strand = Plus / Minus Query: 403 gaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttcac 462 |||||||||||| || |||||||| || || ||||| | || ||||||||| || ||||| Sbjct: 58242 gaacaccatgttcgtcagccccgcgccgtgaacgccgagcatcacgtcgcaggaattcac 58183 Query: 463 cgtctccgcgaa 474 ||| | |||||| Sbjct: 58182 cgtttgcgcgaa 58171
>dbj|AK072325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033M07, full insert sequence Length = 1914 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 1534 aggaacaccatgttagtcaagcccgcaccatgcacgccca 1495
>dbj|AK068019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133B03, full insert sequence Length = 2041 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 1531 aggaacaccatgttagtcaagcccgcaccatgcacgccca 1492
>dbj|AK059878.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G06, full insert sequence Length = 965 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 401 aggaacaccatgttggtgagccccgcaccatgcacgccca 440 |||||||||||||| || | ||||||||||||||||||| Sbjct: 455 aggaacaccatgttagtcaagcccgcaccatgcacgccca 416
>emb|AJ867392.1| Triticum aestivum mRNA for glycosyltransferase (a1 gene) Length = 2384 Score = 44.1 bits (22), Expect = 0.43 Identities = 31/34 (91%) Strand = Plus / Minus Query: 431 tgcacgcccaccaacacgtcgcacgagttcaccg 464 ||||||||||||| ||||||||||| | |||||| Sbjct: 1187 tgcacgcccaccagcacgtcgcacgcgctcaccg 1154
>gb|AY104503.1| Zea mays PCO131712 mRNA sequence Length = 612 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Minus Query: 403 gaacaccatgttggtgagccccgcaccatgcacgccca 440 ||||||||||||||| ||||| || || |||||||||| Sbjct: 100 gaacaccatgttggtcagcccggcgccgtgcacgccca 63
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 tatgtgatggtaaaagggatt 110 ||||||||||||||||||||| Sbjct: 88170 tatgtgatggtaaaagggatt 88150
>emb|AJ867400.1| Sorghum bicolor mRNA for glycosyltransferase (a3 gene) Length = 2019 Score = 42.1 bits (21), Expect = 1.7 Identities = 57/69 (82%) Strand = Plus / Minus Query: 398 gggaggaacaccatgttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgag 457 |||||||| ||| ||| || ||||| || || |||||||||| || ||||||| |||| Sbjct: 1487 gggaggaagaccgcgttcgtcagcccggcgccgtgcacgcccagcagcacgtcgtgcgag 1428 Query: 458 ttcaccgtc 466 ||||||||| Sbjct: 1427 ttcaccgtc 1419
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aacttgcccaggtcacgcac 492 |||||||||||||||||||| Sbjct: 835534 aacttgcccaggtcacgcac 835515
>emb|AJ867393.1| Triticum aestivum mRNA for glycosyltransferase (a2a gene) Length = 2129 Score = 40.1 bits (20), Expect = 6.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 412 gttggtgagccccgcaccatgcacgcccaccaacacgtcgcacgagttcacc 463 |||||||||||| || || |||||||||| || |||||| |||||||||| Sbjct: 1588 gttggtgagcccggcgccgtgcacgcccatcatcacgtccaccgagttcacc 1537
>gb|AE005837.1| Caulobacter crescentus CB15 section 163 of 359 of the complete genome Length = 10846 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 ccgcgaacttgcccaggtca 487 |||||||||||||||||||| Sbjct: 8233 ccgcgaacttgcccaggtca 8252
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tcctcggcggtgacctcgta 291 |||||||||||||||||||| Sbjct: 1122346 tcctcggcggtgacctcgta 1122327
>emb|X64701.1|HMGVPG H.mediterranei genes gvpA, gvpC to gvpO Length = 12690 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 cggtgacctcgtactcggcg 298 |||||||||||||||||||| Sbjct: 12441 cggtgacctcgtactcggcg 12422 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,952,778 Number of Sequences: 3902068 Number of extensions: 2952778 Number of successful extensions: 55462 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55119 Number of HSP's gapped (non-prelim): 341 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
