ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERG24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C... 32 0.40
2SYFB_CHLCV (Q824J8) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 4.5
3TRHDE_HUMAN (Q9UKU6) Thyrotropin-releasing hormone degrading ect... 28 7.6
4WDR12_RAT (P61480) WD-repeat protein 12 27 10.0
5WDR12_MOUSE (Q9JJA4) WD-repeat protein 12 (YTM1 homolog) 27 10.0

>ERG24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol|
           reductase) (Sterol C14-reductase)
          Length = 485

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 112 LCGEVRQSEWFVCRP-VFPWVIFFSPWC*SRL*SYG 8
           L GEV   EW   RP +  W+IF   WC  +  +YG
Sbjct: 217 LIGEVDLKEWLELRPGMMGWIIFNCSWCAQQYRNYG 252



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>SYFB_CHLCV (Q824J8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +1

Query: 49  KLPMGRLDDTQTTLTDVPHHTD--PESTVLYTDSFIRCILEPNL-----IIGLGCKLHFL 207
           +L    L  T+  L + P +T     +  L  D+FI C L PNL     ++GL  ++ ++
Sbjct: 127 ELGFAHLQTTERGLFEFPENTPLGESACALLADTFIECSLTPNLGHCASLLGLAREITYV 186

Query: 208 YN 213
            N
Sbjct: 187 TN 188



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>TRHDE_HUMAN (Q9UKU6) Thyrotropin-releasing hormone degrading ectoenzyme (EC|
           3.4.19.6) (TRH-degrading ectoenzyme) (TRH-DE)
           (TRH-specific aminopeptidase) (Thyroliberinase)
           (Pyroglutamyl-peptidase II) (PAP-II)
          Length = 1024

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 2   VASVASKSTLAPGREKNYPWEDWT 73
           VAS  + S   P  E+  PWE WT
Sbjct: 114 VASPGTTSAQPPSEEEREPWEPWT 137



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>WDR12_RAT (P61480) WD-repeat protein 12|
          Length = 423

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 31  STRERKKLPMGRLDDTQTTLTDVPHHTDPESTVLYTDS 144
           + R RKK    +L  T+T L  +  HT+  S+VL++D+
Sbjct: 231 TNRPRKKQKTEQLGLTRTPLVTLSGHTEAISSVLWSDA 268



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>WDR12_MOUSE (Q9JJA4) WD-repeat protein 12 (YTM1 homolog)|
          Length = 423

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 31  STRERKKLPMGRLDDTQTTLTDVPHHTDPESTVLYTDS 144
           + R RKK    +L  T+T L  +  HT+  S+VL++D+
Sbjct: 231 TNRPRKKQKTEQLGLTRTPLVTLSGHTEAISSVLWSDA 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,840,587
Number of Sequences: 219361
Number of extensions: 711231
Number of successful extensions: 1546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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