>ref|XM_872886.1| PREDICTED: Bos taurus similar to expressed sequence AV312086,
            transcript variant 4 (LOC537453), mRNA
          Length = 3552

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 270  ccggtcaccaccttctcctgct 291
            ||||||||||||||||||||||
Sbjct: 3047 ccggtcaccaccttctcctgct 3068

>ref|XM_872692.1| PREDICTED: Bos taurus similar to expressed sequence AV312086,
            transcript variant 3 (LOC537453), mRNA
          Length = 4328

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 270  ccggtcaccaccttctcctgct 291
            ||||||||||||||||||||||
Sbjct: 3823 ccggtcaccaccttctcctgct 3844

>ref|XM_872576.1| PREDICTED: Bos taurus similar to expressed sequence AV312086,
            transcript variant 2 (LOC537453), mRNA
          Length = 2045

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 270  ccggtcaccaccttctcctgct 291
            ||||||||||||||||||||||
Sbjct: 1540 ccggtcaccaccttctcctgct 1561

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 274     tcaccaccttctcctgctgaaagcccttggggta 307
               |||||| | ||||||||||||||||||| |||||
Sbjct: 7011794 tcaccatcctctcctgctgaaagccctttgggta 7011827

>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 274   tcaccaccttctcctgctgaaagcccttggggta 307
             |||||| | ||||||||||||||||||| |||||
Sbjct: 15213 tcaccatcctctcctgctgaaagccctttgggta 15246

>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 274    tcaccaccttctcctgctgaaagcccttggggta 307
              |||||| | ||||||||||||||||||| |||||
Sbjct: 105416 tcaccatcctctcctgctgaaagccctttgggta 105449

>dbj|AK101829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G21, full
           insert sequence
          Length = 1095

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 274 tcaccaccttctcctgctgaaagcccttggggta 307
           |||||| | ||||||||||||||||||| |||||
Sbjct: 913 tcaccatcctctcctgctgaaagccctttgggta 880

>ref|NM_197413.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBb0028C01.26), mRNA
          Length = 1307

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 163  gagcccaacttgataataggattgggctgcaagctgcattt 203
            |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 1227 gagcccaaattaaaaatagaattaggctgcaagctgcattt 1187



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 283  tctcctgctgaaagcccttggggta 307
            ||||||||||||||||||| |||||
Sbjct: 1128 tctcctgctgaaagccctttgggta 1104

>ref|XM_322513.1| Neurospora crassa OR74A hypothetical protein (NCU00428.1) partial
           mRNA
          Length = 2682

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 266 cttgccggtcaccaccttctcctgc 290
           ||||||||||||||||| |||||||
Sbjct: 16  cttgccggtcaccacctgctcctgc 40

>ref|XM_951599.1| Neurospora crassa OR74A hypothetical protein (NCU00428.1) partial
           mRNA
          Length = 2682

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 266 cttgccggtcaccaccttctcctgc 290
           ||||||||||||||||| |||||||
Sbjct: 16  cttgccggtcaccacctgctcctgc 40

>emb|BX908807.1| Neurospora crassa DNA linkage group III BAC contig B13B7
          Length = 93134

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 266   cttgccggtcaccaccttctcctgc 290
             ||||||||||||||||| |||||||
Sbjct: 55739 cttgccggtcaccacctgctcctgc 55763

>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete
             sequence
          Length = 137366

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 283   tctcctgctgaaagcccttggggta 307
             ||||||||||||||||||| |||||
Sbjct: 42393 tctcctgctgaaagccctttgggta 42417



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 163   gagcccaacttgataataggattgggctgcaagctgcattt 203
             |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 42294 gagcccaaattaaaaatagaattaggctgcaagctgcattt 42334

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 163      gagcccaacttgataataggattgggctgcaagctgcattt 203
                |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 20190791 gagcccaaattaaaaatagaattaggctgcaagctgcattt 20190831

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 163      gagcccaacttgataataggattgggctgcaagctgcattt 203
                |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 19735218 gagcccaaattaaaaatagaattaggctgcaagctgcattt 19735178



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 283      tctcctgctgaaagcccttggggta 307
                ||||||||||||||||||| |||||
Sbjct: 19735119 tctcctgctgaaagccctttgggta 19735095

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 163      gagcccaacttgataataggattgggctgcaagctgcattt 203
                |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 19746494 gagcccaaattaaaaatagaattaggctgcaagctgcattt 19746454



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 283      tctcctgctgaaagcccttggggta 307
                ||||||||||||||||||| |||||
Sbjct: 19746395 tctcctgctgaaagccctttgggta 19746371

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 163      gagcccaacttgataataggattgggctgcaagctgcattt 203
                |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 20117005 gagcccaaattaaaaatagaattaggctgcaagctgcattt 20117045

>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152862

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 163   gagcccaacttgataataggattgggctgcaagctgcattt 203
             |||||||| || | ||||| ||| |||||||||||||||||
Sbjct: 55025 gagcccaaattaaaaatagaattaggctgcaagctgcattt 55065

>ref|NM_112308.1| Arabidopsis thaliana unknown protein AT3G14480 mRNA, complete cds
          Length = 528

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 gccaccaccactacaactac 248
           ||||||||||||||||||||
Sbjct: 438 gccaccaccactacaactac 419

>gb|AC168274.5| Mus musculus  BAC RP23-229B1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177020

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   agcccaacttgataatagga 183
             ||||||||||||||||||||
Sbjct: 14314 agcccaacttgataatagga 14295

>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    tcaccaccttctcctgctga 293
              ||||||||||||||||||||
Sbjct: 167883 tcaccaccttctcctgctga 167864

>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tcaccaccttctcctgctga 293
             ||||||||||||||||||||
Sbjct: 68459 tcaccaccttctcctgctga 68440

>emb|AL109897.30|HSJ134M13 Human DNA sequence from clone RP1-134M13 on chromosome 6q13-14.3 Contains
              the 3' end of the SUMO-1-specific protease (SUSP1) gene,
              the 5' end of the MYO6 gene for Myosin VI (DFNA22 KIAA0389)
              and one CpG island, complete sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    ccaccaccactacaactacgatct 253
              ||||||||||||||||||| ||||
Sbjct: 115332 ccaccaccactacaactactatct 115309

>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   ctcaccacacagaccctgag 120
             ||||||||||||||||||||
Sbjct: 12008 ctcaccacacagaccctgag 12027

>dbj|AB028617.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOA2
          Length = 52232

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   gccaccaccactacaactac 248
             ||||||||||||||||||||
Sbjct: 42782 gccaccaccactacaactac 42763

>gb|AC113936.16| Mus musculus chromosome 10, clone RP23-9F21, complete sequence
          Length = 205086

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   agcccaacttgataatagga 183
             ||||||||||||||||||||
Sbjct: 66848 agcccaacttgataatagga 66867

>emb|Z71572.1|OAJHREGS O.aries DNA for immunoglobulin joining regions
          Length = 2630

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 cctcaccacacagaccctga 119
           ||||||||||||||||||||
Sbjct: 577 cctcaccacacagaccctga 558


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,209,762
Number of Sequences: 3902068
Number of extensions: 2209762
Number of successful extensions: 42662
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42565
Number of HSP's gapped (non-prelim): 97
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)