ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart56a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genom... 232 9e-58
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 232 9e-58
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 232 9e-58
4ref|NM_188092.1| Oryza sativa (japonica cultivar-group), Ozsa852... 54 5e-04
5ref|NM_031087.1| Rattus norvegicus presenilin 2 (Psen2), mRNA 54 5e-04
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
7dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
8dbj|AK106403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
9gb|BC078805.1| Rattus norvegicus presenilin 2, mRNA (cDNA clone ... 54 5e-04
10emb|X99267.1|RNX99267 R.norvegicus mRNA for presenilin-2 54 5e-04
11dbj|D83700.1| Rattus norvegicus cDNA for presenilin-2, complete cds 54 5e-04
12dbj|AB004454.1| Rattus norvegicus mRNA for presenilin-2, complet... 54 5e-04
13gb|BC072862.1| Xenopus laevis presenilin-beta, mRNA (cDNA clone ... 52 0.002
14dbj|D84428.1| Xenopus laevis mRNA for presenilin-beta, complete cds 52 0.002
15ref|NM_131514.2| Danio rerio presenilin2 (psen2), mRNA 48 0.028
16gb|BC070887.1| Rattus norvegicus presenilin 1, mRNA (cDNA clone ... 48 0.028
17gb|BC065382.1| Danio rerio presenilin2, mRNA (cDNA clone MGC:775... 48 0.028
18ref|NM_019163.2| Rattus norvegicus presenilin 1 (Psen1), mRNA 48 0.028
19gb|AF178539.1|AF178539 Danio rerio presenilin-2 (ps2) mRNA, comp... 48 0.028
20emb|AJ271795.1|DRE271795 Danio rerio mRNA for putative presenili... 48 0.028
21dbj|D82578.1|RATS182 Rattus norvegicus mRNA for S182 protein, co... 48 0.028
22gb|BC064246.1| Xenopus tropicalis hypothetical protein LOC394924... 46 0.11
23ref|NM_011183.1| Mus musculus presenilin 2 (Psen2), mRNA 46 0.11
24gb|BC010403.1| Mus musculus presenilin 2, mRNA (cDNA clone MGC:1... 46 0.11
25ref|XM_446399.1| Candida glabrata CBS138, CAGL0G00858g partial mRNA 46 0.11
26emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 46 0.11
27ref|NM_001031856.1| Xenopus tropicalis presenilin 1 (Alzheimer d... 46 0.11
28dbj|AK148111.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 46 0.11
29dbj|AK154119.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 46 0.11
30dbj|AK077576.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 46 0.11
31dbj|AB118572.1| Ephydatia fluviatilis mRNA for presenilin, compl... 46 0.11
32gb|AY864737.1| Mus musculus strain Swiss Albino presenilin 2 mRN... 46 0.11
33gb|U57325.1|MMU57325 Mus musculus PS-2short mRNA, complete cds 46 0.11
34gb|U57324.1|MMU57324 Mus musculus PS-2 mRNA, complete cds 46 0.11
35gb|U49111.1|MMU49111 Mus musculus ALG-3 mRNA, partial cds 46 0.11
36gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, comple... 46 0.11
37gb|AF038935.1|AF038935 Mus musculus presenilin 2 mRNA, complete cds 46 0.11
38dbj|D82363.1| Rattus norvegicus mRNA for presenilin-1, complete cds 44 0.44
39gb|AY525067.1| Rosa hybrid cultivar 1-aminocyclopropane-1-carbox... 42 1.7
40emb|AL033518.14|HS322I12 Human DNA sequence from clone RP3-322I1... 42 1.7
41ref|NM_001017181.2| Xenopus tropicalis presenilin 2 (Alzheimer d... 42 1.7
42emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in... 42 1.7
43gb|AC007645.4|AC007645 Drosophila melanogaster, chromosome 3R, r... 42 1.7
44emb|BX294181.5| Zebrafish DNA sequence from clone CH211-284E13 i... 42 1.7
45emb|BX537337.9| Zebrafish DNA sequence from clone CH211-222E23 i... 42 1.7
46gb|AE003690.3| Drosophila melanogaster chromosome 3R, section 28... 42 1.7
47emb|CR760673.2| Xenopus tropicalis finished cDNA, clone TEgg010f11 42 1.7
48emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.7
49ref|XM_632498.1| Dictyostelium discoideum hypothetical protein (... 40 6.9
50gb|AF369890.1|AF369890S1 Branchiostoma floridae extracellular ma... 40 6.9
51gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 40 6.9
52gb|AC159441.1| Trypanosoma brucei chromosome 5 clone RPCI93-30F7... 40 6.9
53gb|AC159432.1| Trypanosoma brucei chromosome 5 clone RPCI93-28F8... 40 6.9
54gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 6.9
55gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, com... 40 6.9
56gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.9
57gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Can... 40 6.9
58gb|AF315819.1|AF315819 Botryocladia uvarioides DNA-dependent RNA... 40 6.9
59gb|U18839.1|SCE9747 Saccharomyces cerevisiae chromosome V cosmid... 40 6.9
60gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.9
61dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9 
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score =  232 bits (117), Expect = 9e-58
 Identities = 237/277 (85%)
 Strand = Plus / Minus

                                                                         
Query: 190   aatgctaaaacatcagaaagtttgtggagcactgcataacaaatgcctcgagcaatgttc 249
             ||||||||||||||| ||  || || ||||||||||| ||||| | ||||||||||||||
Sbjct: 33334 aatgctaaaacatcacaagattagtagagcactgcatgacaaaagtctcgagcaatgttc 33275

                                                                         
Query: 250   ttgtgagcacgtaaaacagaacgccgagggagatggacaccggtagtgcgggcaatgcct 309
             |||||||||| ||||||| ||| || |||| ||| || ||||| || || ||||||||||
Sbjct: 33274 ttgtgagcacataaaacacaacaccaagggcgatcgagaccgggagggccggcaatgcct 33215

                                                                         
Query: 310   tgcggtagaatgccagcagtagcagagtgatgccgagccccgcaatgatggcaaggtagc 369
             | ||||||||||| || || ||||| ||||| |||||||| ||||| |||||||| || |
Sbjct: 33214 tacggtagaatgctagtagcagcagggtgataccgagcccagcaattatggcaagataac 33155

                                                                         
Query: 370   aagcgtagactgtcatgtagtcgtacatagccgccctcccgacgagcacgctgtagaata 429
             | || || |||||||||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct: 33154 atgcatacactgtcatgtagtcatacattgctgccctcccgacgagaacgctgtagaata 33095

                                                  
Query: 430   tgaagtctcccagcccaagcttgattgcccctgatga 466
             ||||||| ||||  ||||||||||| ||||| |||||
Sbjct: 33094 tgaagtcccccaatccaagcttgatagccccagatga 33058
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  232 bits (117), Expect = 9e-58
 Identities = 237/277 (85%)
 Strand = Plus / Minus

                                                                            
Query: 190      aatgctaaaacatcagaaagtttgtggagcactgcataacaaatgcctcgagcaatgttc 249
                ||||||||||||||| ||  || || ||||||||||| ||||| | ||||||||||||||
Sbjct: 22438087 aatgctaaaacatcacaagattagtagagcactgcatgacaaaagtctcgagcaatgttc 22438028

                                                                            
Query: 250      ttgtgagcacgtaaaacagaacgccgagggagatggacaccggtagtgcgggcaatgcct 309
                |||||||||| ||||||| ||| || |||| ||| || ||||| || || ||||||||||
Sbjct: 22438027 ttgtgagcacataaaacacaacaccaagggcgatcgagaccgggagggccggcaatgcct 22437968

                                                                            
Query: 310      tgcggtagaatgccagcagtagcagagtgatgccgagccccgcaatgatggcaaggtagc 369
                | ||||||||||| || || ||||| ||||| |||||||| ||||| |||||||| || |
Sbjct: 22437967 tacggtagaatgctagtagcagcagggtgataccgagcccagcaattatggcaagataac 22437908

                                                                            
Query: 370      aagcgtagactgtcatgtagtcgtacatagccgccctcccgacgagcacgctgtagaata 429
                | || || |||||||||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct: 22437907 atgcatacactgtcatgtagtcatacattgctgccctcccgacgagaacgctgtagaata 22437848

                                                     
Query: 430      tgaagtctcccagcccaagcttgattgcccctgatga 466
                ||||||| ||||  ||||||||||| ||||| |||||
Sbjct: 22437847 tgaagtcccccaatccaagcttgatagccccagatga 22437811
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  232 bits (117), Expect = 9e-58
 Identities = 237/277 (85%)
 Strand = Plus / Minus

                                                                            
Query: 190      aatgctaaaacatcagaaagtttgtggagcactgcataacaaatgcctcgagcaatgttc 249
                ||||||||||||||| ||  || || ||||||||||| ||||| | ||||||||||||||
Sbjct: 22431116 aatgctaaaacatcacaagattagtagagcactgcatgacaaaagtctcgagcaatgttc 22431057

                                                                            
Query: 250      ttgtgagcacgtaaaacagaacgccgagggagatggacaccggtagtgcgggcaatgcct 309
                |||||||||| ||||||| ||| || |||| ||| || ||||| || || ||||||||||
Sbjct: 22431056 ttgtgagcacataaaacacaacaccaagggcgatcgagaccgggagggccggcaatgcct 22430997

                                                                            
Query: 310      tgcggtagaatgccagcagtagcagagtgatgccgagccccgcaatgatggcaaggtagc 369
                | ||||||||||| || || ||||| ||||| |||||||| ||||| |||||||| || |
Sbjct: 22430996 tacggtagaatgctagtagcagcagggtgataccgagcccagcaattatggcaagataac 22430937

                                                                            
Query: 370      aagcgtagactgtcatgtagtcgtacatagccgccctcccgacgagcacgctgtagaata 429
                | || || |||||||||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct: 22430936 atgcatacactgtcatgtagtcatacattgctgccctcccgacgagaacgctgtagaata 22430877

                                                     
Query: 430      tgaagtctcccagcccaagcttgattgcccctgatga 466
                ||||||| ||||  ||||||||||| ||||| |||||
Sbjct: 22430876 tgaagtcccccaatccaagcttgatagccccagatga 22430840
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>ref|NM_188092.1| Oryza sativa (japonica cultivar-group), Ozsa8524 predicted mRNA
          Length = 1437

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 345  agccccgcaatgatggcaaggtagcaagcgtagactgtcatgtagtcgtacatagccgcc 404
            ||||| |||||||||||||||||||| || || || |||||    || ||||| || |||
Sbjct: 1286 agcccagcaatgatggcaaggtagcacgcatacaccgtcatcagatcatacatcgcagcc 1227

                                   
Query: 405  ctcccgacgagcacgctgtagaa 427
            ||||| || ||||||||||||||
Sbjct: 1226 ctccccacaagcacgctgtagaa 1204
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>ref|NM_031087.1| Rattus norvegicus presenilin 2 (Psen2), mRNA
          Length = 2088

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| ||||||||
Sbjct: 1235 acgctgtagaagatgaagtctcccagaccaagctt 1201
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                           
Query: 345     agccccgcaatgatggcaaggtagcaagcgtagactgtcatgtagtcgtacatagccgcc 404
               ||||| |||||||||||||||||||| || || || |||||    || ||||| || |||
Sbjct: 9681987 agcccagcaatgatggcaaggtagcacgcatacaccgtcatcagatcatacatcgcagcc 9682046

                                      
Query: 405     ctcccgacgagcacgctgtagaa 427
               ||||| || ||||||||||||||
Sbjct: 9682047 ctccccacaagcacgctgtagaa 9682069
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>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0038F12
          Length = 190014

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                          
Query: 345    agccccgcaatgatggcaaggtagcaagcgtagactgtcatgtagtcgtacatagccgcc 404
              ||||| |||||||||||||||||||| || || || |||||    || ||||| || |||
Sbjct: 119990 agcccagcaatgatggcaaggtagcacgcatacaccgtcatcagatcatacatcgcagcc 120049

                                     
Query: 405    ctcccgacgagcacgctgtagaa 427
              ||||| || ||||||||||||||
Sbjct: 120050 ctccccacaagcacgctgtagaa 120072
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>dbj|AK106403.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G09, full
            insert sequence
          Length = 1387

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 345  agccccgcaatgatggcaaggtagcaagcgtagactgtcatgtagtcgtacatagccgcc 404
            ||||| |||||||||||||||||||| || || || |||||    || ||||| || |||
Sbjct: 1171 agcccagcaatgatggcaaggtagcacgcatacaccgtcatcagatcatacatcgcagcc 1112

                                   
Query: 405  ctcccgacgagcacgctgtagaa 427
            ||||| || ||||||||||||||
Sbjct: 1111 ctccccacaagcacgctgtagaa 1089
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>gb|BC078805.1| Rattus norvegicus presenilin 2, mRNA (cDNA clone MGC:93382
            IMAGE:7109917), complete cds
          Length = 1628

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| ||||||||
Sbjct: 1212 acgctgtagaagatgaagtctcccagaccaagctt 1178
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>emb|X99267.1|RNX99267 R.norvegicus mRNA for presenilin-2
          Length = 2088

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| ||||||||
Sbjct: 1235 acgctgtagaagatgaagtctcccagaccaagctt 1201
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>dbj|D83700.1| Rattus norvegicus cDNA for presenilin-2, complete cds
          Length = 1347

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| ||||||||
Sbjct: 1115 acgctgtagaagatgaagtctcccagaccaagctt 1081
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>dbj|AB004454.1| Rattus norvegicus mRNA for presenilin-2, complete cds
          Length = 1414

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| ||||||||
Sbjct: 1122 acgctgtagaagatgaagtctcccagaccaagctt 1088
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>gb|BC072862.1| Xenopus laevis presenilin-beta, mRNA (cDNA clone MGC:80267
            IMAGE:5073280), complete cds
          Length = 2562

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 414  agcacgctgtagaatatgaagtctcccagcccaagctt 451
            ||||| |||||||||||||||||||| || ||||||||
Sbjct: 1236 agcacactgtagaatatgaagtctccaagaccaagctt 1199
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>dbj|D84428.1| Xenopus laevis mRNA for presenilin-beta, complete cds
          Length = 2490

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 414  agcacgctgtagaatatgaagtctcccagcccaagctt 451
            ||||| |||||||||||||||||||| || ||||||||
Sbjct: 1171 agcacactgtagaatatgaagtctccaagaccaagctt 1134
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>ref|NM_131514.2| Danio rerio presenilin2 (psen2), mRNA
          Length = 1825

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||||||||||||||| |||||
Sbjct: 1208 ctgtagaagatgaagtctcccagccccagctt 1177
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>gb|BC070887.1| Rattus norvegicus presenilin 1, mRNA (cDNA clone MGC:91716
            IMAGE:7098018), complete cds
          Length = 2843

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||| |||||||||||||||||
Sbjct: 1368 ctgtagaaaatgaaatctcccagcccaagctt 1337
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>gb|BC065382.1| Danio rerio presenilin2, mRNA (cDNA clone MGC:77583 IMAGE:7000489),
            complete cds
          Length = 1743

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||||||||||||||| |||||
Sbjct: 1198 ctgtagaagatgaagtctcccagccccagctt 1167
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>ref|NM_019163.2| Rattus norvegicus presenilin 1 (Psen1), mRNA
          Length = 2843

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||| |||||||||||||||||
Sbjct: 1368 ctgtagaaaatgaaatctcccagcccaagctt 1337
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>gb|AF178539.1|AF178539 Danio rerio presenilin-2 (ps2) mRNA, complete cds
          Length = 1825

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||||||||||||||| |||||
Sbjct: 1208 ctgtagaagatgaagtctcccagccccagctt 1177
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>emb|AJ271795.1|DRE271795 Danio rerio mRNA for putative presenilin2 homolog (pre2 gene)
          Length = 1326

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||||||||||||||| |||||
Sbjct: 1094 ctgtagaagatgaagtctcccagccccagctt 1063
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>dbj|D82578.1|RATS182 Rattus norvegicus mRNA for S182 protein, complete cds
          Length = 1407

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 420  ctgtagaatatgaagtctcccagcccaagctt 451
            |||||||| ||||| |||||||||||||||||
Sbjct: 1172 ctgtagaaaatgaaatctcccagcccaagctt 1141
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>gb|BC064246.1| Xenopus tropicalis hypothetical protein LOC394924, mRNA (cDNA clone
            IMAGE:5336700), partial cds
          Length = 2062

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 414  agcacgctgtagaatatgaagtctcccagcccaag 448
            ||||| |||||||| |||||||||||||| |||||
Sbjct: 1158 agcacactgtagaaaatgaagtctcccagtccaag 1124
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>ref|NM_011183.1| Mus musculus presenilin 2 (Psen2), mRNA
          Length = 1954

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1156 acgctgtagaagatgaagtctcccaggccgagctt 1122
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>gb|BC010403.1| Mus musculus presenilin 2, mRNA (cDNA clone MGC:13863 IMAGE:4038761),
            complete cds
          Length = 1520

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1151 acgctgtagaagatgaagtctcccaggccgagctt 1117
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>ref|XM_446399.1| Candida glabrata CBS138, CAGL0G00858g partial mRNA
          Length = 1062

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 479 tgcatcttcatcggtgtcatcgtcgtc 505
           ||||||||||||| |||||||||||||
Sbjct: 324 tgcatcttcatcgttgtcatcgtcgtc 350
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 479   tgcatcttcatcggtgtcatcgtcgtc 505
             ||||||||||||| |||||||||||||
Sbjct: 75541 tgcatcttcatcgttgtcatcgtcgtc 75567
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>ref|NM_001031856.1| Xenopus tropicalis presenilin 1 (Alzheimer disease 3) (psen1), mRNA
          Length = 2062

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 414  agcacgctgtagaatatgaagtctcccagcccaag 448
            ||||| |||||||| |||||||||||||| |||||
Sbjct: 1158 agcacactgtagaaaatgaagtctcccagtccaag 1124
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>dbj|AK148111.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370019N06 product:presenilin 2, full insert
            sequence
          Length = 1535

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1197 acgctgtagaagatgaagtctcccaggccgagctt 1163
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>dbj|AK154119.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630003C09
            product:presenilin 2, full insert sequence
          Length = 1938

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1141 acgctgtagaagatgaagtctcccaggccgagctt 1107
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>dbj|AK077576.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730454K04 product:presenilin 2,
           full insert sequence
          Length = 1450

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 417 acgctgtagaatatgaagtctcccagcccaagctt 451
           ||||||||||| |||||||||||||| || |||||
Sbjct: 650 acgctgtagaagatgaagtctcccaggccgagctt 616
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>dbj|AB118572.1| Ephydatia fluviatilis mRNA for presenilin, complete cds
          Length = 1560

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 419  gctgtagaatatgaagtctcccagcccaagcttga 453
            ||||||||| ||||||||||||| ||| |||||||
Sbjct: 1254 gctgtagaaaatgaagtctcccaaccccagcttga 1220
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>gb|AY864737.1| Mus musculus strain Swiss Albino presenilin 2 mRNA, partial cds
          Length = 783

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 417 acgctgtagaatatgaagtctcccagcccaagctt 451
           ||||||||||| |||||||||||||| || |||||
Sbjct: 551 acgctgtagaagatgaagtctcccaggccgagctt 517
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>gb|U57325.1|MMU57325 Mus musculus PS-2short mRNA, complete cds
          Length = 1146

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 417 acgctgtagaatatgaagtctcccagcccaagctt 451
           ||||||||||| |||||||||||||| || |||||
Sbjct: 348 acgctgtagaagatgaagtctcccaggccgagctt 314
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>gb|U57324.1|MMU57324 Mus musculus PS-2 mRNA, complete cds
          Length = 1954

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1156 acgctgtagaagatgaagtctcccaggccgagctt 1122
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>gb|U49111.1|MMU49111 Mus musculus ALG-3 mRNA, partial cds
          Length = 897

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 417 acgctgtagaatatgaagtctcccagcccaagctt 451
           ||||||||||| |||||||||||||| || |||||
Sbjct: 99  acgctgtagaagatgaagtctcccaggccgagctt 65
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>gb|AC132436.3| Mus musculus BAC clone RP23-226J18 from 1, complete sequence
          Length = 248067

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 417    acgctgtagaatatgaagtctcccagcccaagctt 451
              ||||||||||| |||||||||||||| || |||||
Sbjct: 184640 acgctgtagaagatgaagtctcccaggccgagctt 184674
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>gb|AF038935.1|AF038935 Mus musculus presenilin 2 mRNA, complete cds
          Length = 1490

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 417  acgctgtagaatatgaagtctcccagcccaagctt 451
            ||||||||||| |||||||||||||| || |||||
Sbjct: 1130 acgctgtagaagatgaagtctcccaggccgagctt 1096
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>dbj|D82363.1| Rattus norvegicus mRNA for presenilin-1, complete cds
          Length = 1407

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 420  ctgtagaatatgaagtctcccagcccaagc 449
            |||||||| ||||| |||||||||||||||
Sbjct: 1172 ctgtagaaaatgaaatctcccagcccaagc 1143
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>gb|AY525067.1| Rosa hybrid cultivar 1-aminocyclopropane-1-carboxylate synthase
           (ACS3) gene, partial cds
          Length = 931

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  gattaacagtttcacaaacat 98
           |||||||||||||||||||||
Sbjct: 579 gattaacagtttcacaaacat 599
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>emb|AL033518.14|HS322I12 Human DNA sequence from clone RP3-322I12 on chromosome 6p22.3-24.1
            Contains the 3' end of the gene for a novel protein
            (contains KIAA1880 and FLJ32945) and two novel genes,
            complete sequence
          Length = 112961

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 217  agcactgcataacaaatgcct 237
            |||||||||||||||||||||
Sbjct: 8006 agcactgcataacaaatgcct 7986
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>ref|NM_001017181.2| Xenopus tropicalis presenilin 2 (Alzheimer disease 4) (psen2), mRNA
          Length = 2483

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 420  ctgtagaatatgaagtctcccagcccaag 448
            |||||||||||||||||||| || |||||
Sbjct: 1219 ctgtagaatatgaagtctccaagaccaag 1191
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>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5,
            complete sequence
          Length = 191453

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  cactgcataacaaatgcctcg 239
            |||||||||||||||||||||
Sbjct: 5940 cactgcataacaaatgcctcg 5920
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>gb|AC007645.4|AC007645 Drosophila melanogaster, chromosome 3R, region 86C-86D, BAC clone
              BACR04L09, complete sequence
          Length = 165136

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     atggcctgaccaggacaaaca 117
              |||||||||||||||||||||
Sbjct: 132507 atggcctgaccaggacaaaca 132487
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>emb|BX294181.5| Zebrafish DNA sequence from clone CH211-284E13 in linkage group 5,
            complete sequence
          Length = 171388

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 219  cactgcataacaaatgcctcg 239
            |||||||||||||||||||||
Sbjct: 9216 cactgcataacaaatgcctcg 9236
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>emb|BX537337.9| Zebrafish DNA sequence from clone CH211-222E23 in linkage group 19,
              complete sequence
          Length = 217375

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    atgctaaaacatcagaaagtt 211
              |||||||||||||||||||||
Sbjct: 141349 atgctaaaacatcagaaagtt 141369
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>gb|AE003690.3| Drosophila melanogaster chromosome 3R, section 28 of 118 of the
            complete sequence
          Length = 170298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 97   atggcctgaccaggacaaaca 117
            |||||||||||||||||||||
Sbjct: 9162 atggcctgaccaggacaaaca 9142
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>emb|CR760673.2| Xenopus tropicalis finished cDNA, clone TEgg010f11
          Length = 2483

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 420  ctgtagaatatgaagtctcccagcccaag 448
            |||||||||||||||||||| || |||||
Sbjct: 1219 ctgtagaatatgaagtctccaagaccaag 1191
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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   gcccctgatgaggccaaccca 476
             |||||||||||||||||||||
Sbjct: 28393 gcccctgatgaggccaaccca 28413
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>ref|XM_632498.1| Dictyostelium discoideum hypothetical protein (DDB0187065), partial
           mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 483 tcttcatcggtgtcatcgtcgtcg 506
           |||||||||||||| |||||||||
Sbjct: 578 tcttcatcggtgtcttcgtcgtcg 555
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>gb|AF369890.1|AF369890S1 Branchiostoma floridae extracellular matrix-related protein, kinesin
             light chain-like protein, and CR1 retrotransposon
             endonuclease/reverse transcriptase genes, complete cds;
             presenilin (PS) gene, exons 1 through 9
          Length = 16524

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 420   ctgtagaatatgaagtctcccagcccaagctt 451
             |||||||| |||||||||||||| || |||||
Sbjct: 15934 ctgtagaagatgaagtctcccagtcccagctt 15903
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     aacagtttcacaaacatggc 101
              ||||||||||||||||||||
Sbjct: 279369 aacagtttcacaaacatggc 279350
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>gb|AC159441.1| Trypanosoma brucei chromosome 5 clone RPCI93-30F7, complete sequence
          Length = 101712

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aacagtttcacaaacatggc 101
             ||||||||||||||||||||
Sbjct: 10775 aacagtttcacaaacatggc 10794
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>gb|AC159432.1| Trypanosoma brucei chromosome 5 clone RPCI93-28F8, complete sequence
          Length = 140539

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     aacagtttcacaaacatggc 101
              ||||||||||||||||||||
Sbjct: 114157 aacagtttcacaaacatggc 114176
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 450     ttgattgcccctgatgaggc 469
               ||||||||||||||||||||
Sbjct: 4919634 ttgattgcccctgatgaggc 4919615
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>gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, complete sequence
          Length = 219314

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    aaacagttccccaaatacta 132
              ||||||||||||||||||||
Sbjct: 108440 aaacagttccccaaatacta 108421
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     ccgagggagatggacaccgg 292
               ||||||||||||||||||||
Sbjct: 3812781 ccgagggagatggacaccgg 3812762
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>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   aggacaaacagttccccaaatact 131
             |||||||||||||||| |||||||
Sbjct: 32978 aggacaaacagttcccaaaatact 32955
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>gb|AF315819.1|AF315819 Botryocladia uvarioides DNA-dependent RNA polymerase II largest
            subunit RPB1 (RPB1) gene, partial cds
          Length = 5136

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 486  tcatcggtgtcatcgtcgtc 505
            ||||||||||||||||||||
Sbjct: 3650 tcatcggtgtcatcgtcgtc 3631
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>gb|U18839.1|SCE9747 Saccharomyces cerevisiae chromosome V cosmids 9747, 8198, 9781, and
             lambda clones 3612 and 6052
          Length = 64797

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   tcttcatcggtgtcatcgtc 502
             ||||||||||||||||||||
Sbjct: 23953 tcttcatcggtgtcatcgtc 23934
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 142    caactggagaaagccttgattgtg 165
              ||||||| ||||||||||||||||
Sbjct: 100071 caactggggaaagccttgattgtg 100094
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>dbj|AP000874.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-760N9, complete
             sequences
          Length = 150638

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tgtaagtcatcagattaaca 85
             ||||||||||||||||||||
Sbjct: 94671 tgtaagtcatcagattaaca 94690


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,797,466
Number of Sequences: 3902068
Number of extensions: 3797466
Number of successful extensions: 90496
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90286
Number of HSP's gapped (non-prelim): 206
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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